XLOC_020211


Basic Information

Item Value
gene id XLOC_020211
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9886745 ~ 9904498 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042067
CTCAAAAGCAGAAATTATTTCCTTGTTTTATTTACTACTTCAAATTGGTGCATATTGCACTAACAATACAGCATCAGAACTCGAAACTACTTTGCTCTCAGACATGAACTTTTTTTATGACTGTACAGAGTAGTAGAATAAGTAAACCTTTTCCCACACGAATGACACGGAtacggcttttctccagtgtggaccctCTTGTGTATTTTCAGATATTGTAACCGtttgaatctcttgtcgcagtacGAACATTTATAAGGCGTTTCTGTAGTGTGAACTGACTGGTGACCTTTTAGTGCACTAGCAGAATAGAAAGACTTCCCACACTCAGAGCAAGCATGATCCTTCACACCGCTGTGCCTTTTCTGGTGTGATTTTAATCCACTCGTATAacgaaaactcttcccacacaaaTAACACACGTATGGCCTCTCATCTGTGTGAACTTTTCGGTGTTCCCTCAGAAAACTTGGCCTGAAAAAGCTTTTAtcacactgtttacatttatagATTCTCTCTCTAGTATGAGTCAGCAGATGATCCTTTAAAACACTCAATCTtctgaaacttttcccacactgatcACATTTGTGCAgattctctccggtgtggatcttctTGTGATTAGCAAGGCTTTCCCTTCTGGCAAAACTGGCCTCGCAGCGATCACATGtgaacggcttctctccggtaTGGATCGTGCTGTGTGTGTCTAGACCTTCTTTAtttctgaaactcttcccgcactgatCACACGTGTACGGATGTTCTCCTTTGTGAAtcttctcatgtgttttcagataTTGTGACAATTTAAATGCCTTTTCACAGTATGAACACTTATAGGGCGCTTCTGTAGTGTGAACTGACTGGTGCACCTTTAAAgcattatttgtaaaaaatgtcTTGCCACACTTGGAGCAAACACGATCCCTCAAACCTCGGTGTATTTTCTTATGCATATTTAAGGAGGCCATTTtattaaaactcttcccacactgatcaCACGCGTGCGGCTTTTCCCCACTGTGGATCTTTTCATGCAGTTTTACGTATTCTTGCCGTTTGAAACTTTTCTCACAGTGTGAACATTTATAAGGCGTTTCAGAAGTGTGAATAGTTTGGTGcacctttaatgcattttttgtgaAAAAACTCCTGCCACATTTAGTGCAAACGTGATCCCTCACACCGCTGTGTCTTTTCTGATGTCTTTTAAATGCACTTGCATTGcgaaaactctttccacattcaTCACATGTGTACGCCTGGTCTCCGCTGTGAGCTTTCATGTGTGCGCTATAACTTCCAAAATTTGTGAAGGTCCTGTCACACGGAGCACAGGTGTACAGCCTATCcccagtgtggattttcatgtgaaCTTTAAGGCAATCCTTTCTAGAAAAACTCCTTTGACAAAGATCACACgtgtacggcttctctccagtgtggattctcatgtgtaaATCTACATTTTTCTTCAGTCTGAAAGTCTTCTCGCACTGATCACACTTGTATGGCTTTTCTCCACGGTGGATCATCTCATGTATTCGTTGACACTGTAATGATTTGAACGCCTTGCCACAGTCAGGGCATTTGAAAGGTTTTTCTGTAGCGTGAGCTGTGTGGTGGATTTTTAATTGACTGAATGTGAAAAAGCTCTTGCCACACTTGGAGCAGACTTGATTCTTCACAGCGCTGTGTAATTTCcggtgtttttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042067 True 1721 lncRNA 0.41 2 9886745 9904498

Neighbor

gene id symbol gene type direction distance location
XLOC_020210 si:dkey-253d23.4 coding upstream 6337 9871238 ~ 9880408 (+)
XLOC_020209 si:dkey-253d23.3 coding upstream 18038 9862243 ~ 9868707 (+)
XLOC_020208 BX539307.1 coding upstream 31475 9854088 ~ 9855270 (+)
XLOC_020207 si:ch211-236g6.1 coding upstream 77951 9806867 ~ 9808794 (+)
XLOC_020206 si:dkey-102c8.2 coding upstream 91088 9793923 ~ 9795657 (+)
XLOC_020213 blf coding downstream 12509 9917007 ~ 9923692 (+)
XLOC_020214 zgc:171686 coding downstream 35403 9939901 ~ 9945637 (+)
XLOC_020215 BX539307.2 coding downstream 76581 9981079 ~ 9984032 (+)
XLOC_020216 NA coding downstream 85407 9989905 ~ 9991494 (+)
XLOC_020217 BX324216.1 coding downstream 90335 9994833 ~ 10006999 (+)
XLOC_020205 NA non-coding upstream 95378 9782954 ~ 9791367 (+)
XLOC_020197 NA non-coding upstream 503261 9359899 ~ 9383484 (+)
XLOC_020196 BX927329.2 non-coding upstream 527342 9351372 ~ 9359403 (+)
XLOC_020195 NA non-coding upstream 543745 9341455 ~ 9343000 (+)
XLOC_020194 NA non-coding upstream 562928 9322757 ~ 9323817 (+)
XLOC_020219 NA non-coding downstream 114402 10018900 ~ 10049233 (+)
XLOC_020221 NA non-coding downstream 168922 10073420 ~ 10097227 (+)
XLOC_020223 NA non-coding downstream 253965 10158463 ~ 10164865 (+)
XLOC_020226 NA non-coding downstream 310496 10214994 ~ 10222660 (+)

Expression


Co-expression Network