XLOC_020213 (blf)


Basic Information

Item Value
gene id XLOC_020213
gene name blf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9917007 ~ 9923692 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040192
GCCCTTTACTAATCAAGACGGACAAatatatAGAAGCTCCTCCCACTGCAGTTTGCCTATAAATACCGGAAGATTCTTGTCAGTCTGCAAGTGGAGGGAGAACACAGAGAAAATGAGTGATCCAGAAACCAGCATAATGGACCAAGAAGACCTAAGTGATCTGATGGAAGAGAGCGAGGAGAGTGAAGAAATGAGTGAAGTGGAAAAGAAGCGGCGTCATGTCAAAACACCAAAAACATCACAAACTAAAAGTGCCCAAAAGACTTTCAAGTgtcctcagtgtgggaagaaatTTGCACGAAAAAGTGGCCTTACTGCTCACgtgaaaatccacactggagagaaaccgttctcGTGCAaagagtgtgggaagagtttttcgAGTAGCGGATACATTAAGAGACACATGATCATTCACTCCGGAGAGAAGCCGCACACGTGTGATCAGTGCGGTAAAAGTTTTGGACTTGCAAGTAGCCTTAAATCCCACGCTGCAGTTCATTCTGAAGAAAAACCATTCAAGTGTGATCATTGCGGTGACAGTTTTCGTTGGTTATCTAGTCTGAGGGACCACCTGAAAACTCATGGCAAGAAAGAGACTCACGTGTGTTCTGTGTGCGGAAAGAGCTTTGCTCAattgattcttttaaaaaaacacaagaaaagaCACGAAGTGAAGAACTTCATGTGTTTTGAGTGCGGGAAGACCTTTGTAAGAAATTGTGAACTGAAACAGCACCAGAGAGTTCACACCGGAgaaaaaccgtacaagtgttcacactgtgacaagagatTCAGTAACGGATCGTCTAAAGTAGTACAtgagaggatccacactggagaaaggcCGTACTCGTGTGATCAATGTGGGCACGCGTTTAGACACACACACGCCCTCGAGTCTCACAAGCGAATCCACACGGGAGAGAAATCATACACTTGTGATCAATGCGGGAAGAGTTTTACACAAAAAGCAAGCCTTAGAATTCACAAGAAATTTCACAATGCAGAGAAACCGCACACATGCGATcaatgcgggaagagtttcacacTTAAAACAagccttaatgaacacatgaagatccacactggagagaagccgcaCACGTGTGATCAGTGCGGGAAGAGATTCAGTAGGTTAAGCTTGCTTAAATTACATCTGGCCACCCATTCTGTAATCAGACCATATCGCTGTGAGAAGTGCGGCAAAGGCTTTACTTGGGAATCATGCCTGAAGAACCACCTGAAAACTCATTCAGAGGAGAAGCCTCATAAGTGCTCCGTCTGCGGTAAAGGTTTCCGTCTGGCAAATAGTTTACGATCACACCAGAAAAGACACACCGGTGTAAAGAATCACATGTGCTTTGATTGTGGGAAGACCTATTTTACGAAGAATGAACTGAAGCTGCACCAGAAAGTTCATTCAGGAGGAGAGTTCTACAAGTGTTTACACTGCGACATGACATTCAAGCGGTTAGATTATGTGAAAAACCACGAGAAGACCCACACTGTGAGGAGCGATCCATCTGAAAGCTCAGAAGAGGATTAACAATGAAGTAAGCGGTCTGCCCTtcatgtgggaagagtttttctTCTGTTCaagtcaaacataaaaaaaacatggtttaaaAATCACATTGAACTTCAAAATGTgtcaaattatgtttataaaagCTGCATTTTTTGTATGATTCATAACAGAAATATcattgatagttgttgtttcaaGTGTAAGATTCAGAACAACTCAACTCCTCCCTCAATATAACGATTTCTCTTAACCCTATGCTTTTATAATATTAGTAGCCTATTAGATAACCTAGATTATTTTACATTATGAAGTTggaaatgattgtattttcatctCAGGAACCTGGAAAAGGTTTTCACGTTTTTATTTTTGTGGTTGAAATATCCACATCTTGTCTTCTTTTCTTGAAGTGTTTTGTTTATCTTTTATGCCAATAAAGAACAGTCTGTTTTT
>TCONS_00040193
GGAAGATTCTTGTCAGTCTGCAAGTGGAGGGAGAACACAGAGAAAATGAGTGATCCAGAAACCAGCATAATGGACCAAGAAGACCTAAGTGATCTGATGGAAGAGAGCGAGGAGAGTGAAGAAATGAGTGAAGTGGAAAAGAAGCGGCGTCATGTCAAAACACCAAAAACATCACAAACTAAAAGTGCCCAAAAGACTTTCAAGTgtcctcagtgtgggaagaaatTTGCACGAAAAAGTGGCCTTACTGCTCACgtgaaaatccacactggagagaaaccgttctcGTGCAaagagtgtgggaagagtttttcgAGTAGCGGATACATTAAGAGACACATGATCATTCACTCCGGAGAGAAGCCGCACACGTGTGATCAGTGCGGTAAAAGTTTTGGACTTGCAAGTAGCCTTAAATCCCACGCTGCAGTTCATTCTGAAGAAAAACCATTCAAGTGTGATCATTGCGGTGACAGTTTTCGTTGGTTATCTAGTCTGAGGGACCACCTGAAAACTCATGGCAAGAAAGAGACTCACGTGTGTTCTGTGTGCGGAAAGAGCTTTGCTCAattgattcttttaaaaaaacacaagaaaagaCACGAAGTGAAGAACTTCATGTGTTTTGAGTGCGGGAAGACCTTTGTAAGAAATTGTGAACTGAAACAGCACCAGAGAGTTCACACCGGAgaaaaaccgtacaagtgttcacactgtgacaagagatTCAGTAACGGATCGTCTAAAGTAGTACAtgagaggatccacactggagaaaggcCGTACTCGTGTGATCAATGTGGGCACGCGTTTAGACACACACACGCCCTCGAGTCTCACAAGCGAATCCACACGGGAGAGAAATCATACACTTGTGATCAATGCGGGAAGAGTTTTACACAAAAAGCAAGCCTTAGAATTCACAAGAAATTTCACAATGCAGAGAAACCGCACACATGCGATcaatgcgggaagagtttcacacTTAAAACAagccttaatgaacacatgaagatccacactggagagaagccgcaCACGTGTGATCAGTGCGGGAAGAGATTCAGTAGGTTAAGCTTGCTTAAATTACATCTGGCCACCCATTCTGTAATCAGACCATATCGCTGTGAGAAGTGCGGCAAAGGCTTTACTTGGGAATCATGCCTGAAGAACCACCTGAAAACTCATTCAGAGGAGAAGCCTCATAAGTGCTCCGTCTGCGGTAAAGGTTTCCGTCTGGCAAATAGTTTACGATCACACCAGAAAAGACACACCGGTGTAAAGAATCACATGTGCTTTGATTGTGGGAAGACCTATTTTACGAAGAATGAACTGAAGCTGCACCAGAAAGTTCATTCAGGAGGAGAGTTCTACAAGTGTTTACACTGCGACATGACATTCAAGCGGTTAGATTATGTGAAAAACCACGAGAAGACCCACACTGTGAGGAGCGATCCATCTGAAAGCTCAGAAGAGGATTAACAATGAAGTAAGCGGTCTGCCCTtcatgtgggaagagtttttctTCTGTTCaagtcaaacataaaaaaaacatggtttaaaAATCACATTGAACTTCAAAATGTgtcaaattatgtttataaaagCTGCATTTTTTGTATGATTCATAACAGAAATATcattgatagttgttgtttcaaGTGTAAGATTCAGAACAACTCAACTCCTCCCTCAATATAACGATTTCTCTTAACCCTATGCTTTTATAATATTAGTAGCCTATTAGATAACCTAGATTATTTTACATTATGAAGTTggaaatgattgtattttcatctCAGGAACCTGGAAAAGGTTTTCACGTTTTTATTTTTGTGGTTGAAATATCCACATCTTGTCTTCTTTTCTTGAAGTGTTTTGTTTATCTTTTATGCCAATAAAGAACAGTCTGTTTT
>TCONS_00040194
AAAGAGACTCACGTGTGTTCTGTGTGCGGAAAGAGCTTTGCTCAattgattcttttaaaaaaacacaagaaaagaCACGAAGTGAAGAACTTCATGTGTTTTGAGTGCGGGAAGACCTTTGTAAGAAATTGTGAACTGAAACAGCACCAGAGAGTTCACACCGGAgaaaaaccgtacaagtgttcacactgtgacaagagatTCAGTAACGGATCGTCTAAAGTAGTACAtgagaggatccacactggagaaaggcCGTACTCGTGTGATCAATGTGGGCACGCGTTTAGACACACACACGCCCTCGAAATTCACAAGAAATTTCACAATGCAGAGAAACCGCACACATGCGATcaatgcgggaagagtttcacacTTAAAACAagccttaatgaacacatgaagatccacactggagagaagccgcaCACGTGTGATCAGTGCGGGAAGAGATTCAGTAGGTTAAGCTTGCTTAAATTACATCTGGCCACCCATTCTGTAATCAGACCATATCGCTGTGAGAAGTGCGGCAAAGGCTTTACTTGGGAATCATGCCTGAAGAACCACCTGAAAACTCATTCAGAGGAGAAGCCTCATAAGTGCTCCGTCTGCGGTAAAGGTTTCCGTCTGGCAAATAGTTTACGATCACACCAGAAAAGACACACCGGTGTAAAGAATCACATGTGCTTTGATTGTGGGAAGACCTATTTTACGAAGAATGAACTGAAGCTGCACCAGAAAGTTCATTCAGGAGGAGAGTTCTACAAGTGTTTACACTGCGACATGACATTCAAGCGGTTAGATTATGTGAAAAACCACGAGAAGACCCACACT

Function

symbol description
blf Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within convergent extension. Predicted to be active in nucleus. Is expressed in blastoderm; hematopoietic system; hypoblast; and mesoderm.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060026 convergent extension biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050721-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within convergent extension. Predicted to be active in nucleus. Is expressed in blastoderm; hematopoietic system; hypoblast; and mesoderm.

Ensembl:

ensembl_id ENSDARG00000043126

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040192 False 1984 mRNA 0.41 3 9917007 9923692
TCONS_00040193 False 1916 mRNA 0.41 2 9918872 9923691
TCONS_00040194 True 834 mRNA 0.44 2 9922301 9923218

Neighbor

gene id symbol gene type direction distance location
XLOC_020212 NA coding upstream 12384 9897971 ~ 9904623 (+)
XLOC_020211 NA coding upstream 12509 9886745 ~ 9904498 (+)
XLOC_020210 si:dkey-253d23.4 coding upstream 36599 9871238 ~ 9880408 (+)
XLOC_020209 si:dkey-253d23.3 coding upstream 48300 9862243 ~ 9868707 (+)
XLOC_020208 BX539307.1 coding upstream 61737 9854088 ~ 9855270 (+)
XLOC_020214 zgc:171686 coding downstream 16209 9939901 ~ 9945637 (+)
XLOC_020215 BX539307.2 coding downstream 57387 9981079 ~ 9984032 (+)
XLOC_020216 NA coding downstream 66213 9989905 ~ 9991494 (+)
XLOC_020217 BX324216.1 coding downstream 71141 9994833 ~ 10006999 (+)
XLOC_020218 BX324216.4 coding downstream 86600 10010292 ~ 10014369 (+)
XLOC_020205 NA non-coding upstream 125640 9782954 ~ 9791367 (+)
XLOC_020197 NA non-coding upstream 533523 9359899 ~ 9383484 (+)
XLOC_020196 BX927329.2 non-coding upstream 557604 9351372 ~ 9359403 (+)
XLOC_020219 NA non-coding downstream 95208 10018900 ~ 10049233 (+)
XLOC_020221 NA non-coding downstream 149728 10073420 ~ 10097227 (+)
XLOC_020223 NA non-coding downstream 234771 10158463 ~ 10164865 (+)
XLOC_020226 NA non-coding downstream 291302 10214994 ~ 10222660 (+)

Expression


Co-expression Network