XLOC_020214 (zgc:171686)


Basic Information

Item Value
gene id XLOC_020214
gene name zgc:171686
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9939901 ~ 9945637 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040195
CTCGCGCATTGCGTCGTGTTCAGTGTACACTAGTGTACAGCCTTTACATCAAGTCGGACGTAATCATCAGGCTTTAACTTTGCTATCAAAGATCGAGCAAATGAATCTGCGCTTTGGAACCTCACCGTCACCGATGTAACTTTTCGCTCGCGCTCTTTTGtttaatgtggattttttttcagAGGATGTTTGTTGAGCGGTTTAGGAGACTCATTGACAACGGATTCttcttttgtttgtgtttgttgatcGCAAATGGTGTGTTTGGTGCTGATACAGATGAAGTAAAGTCAGTATCTGTGATGGAGGGCGACTCTGTCCTTCTGAATACAGATGTTACTGATGTAAAAAGAGATTATCAGATACTGTGGATGTTTGGACCTCATGAGAGTCGGATAGCTGAAATCTATAAGCAGAACATAGATTTTTATGACAGTAATGGGACATATGGAGACAGACTGAAGATGGACAAtaaaactggatctctgaccatcacaaaAATTAGAATTGTACACTCTGGACTGTATAAACTAAACATCATCAGCAGTGGAGGATCTTCATACCTGAGATTCAGTGTTGCTGTCTATGCTCGTCTGCCCACTCCTCTCATCACAGAGAAATCTACATCAGTTCAAaatccttcatcatcatcatcatcagtcccCAAATGTGTGCTAAACTGTTCTGTGTTGAACGTGAGCAATGcgagtctctcctggtacaaaggaaacagttTATTCTCCAGCATTGAAGTGTCTGATCTTAACAACAGCATTTATCTGCACCTGGAGTGTCTGGATGATTCGTACAGCTGCGTTGTGGCTTATTCATTCACCAACCAGACTACACACCTCAACAACACGCAACACTGTCAGACATGTTCAGGGGCTGTTCAGCGCTCACACATAATACTGCCGAGTGCTTTTGCTGTATTTCTGGCATTGGTGTGTGCTGTATTACTGTGCTGTCACCgcagaaaatgtaaacaaatgggAAAAGCCAATATTCAAGAGGAAGAGATGGATTATGCTGAACCAATATTCTGTACACAACGTCTTCAGAATACGGACGTCATTACGGAAGATCACACAGTGTACTCAAGTATCAGGACATGAGTTGAGGATCCAGGATCTGTTCATATTTACTGTTATTATCATAAATCAACACTGCCACGttttttactgtatgtttaatattttctaCTTATGTTAAAGTCAAGGTTTACTTCCAGAACAGTGAGTAATATTTAACTCCTGTTTCACAGAGCCAGTATTTTTATACAGAAGATATCAGTATTAAAGAATCGGAAGTTCTTGCTTAGTACTTGCACTGTTCATTTCTGTTTTTATAGATCGCATTATTTATAGGTTTTATTTTTGCTTgatttgtctgtttttaaatacattttgtactGCTGTAAAGCAAGGTTCCATTATTATAAATACTTCTTGGTGTTTTAATGAGTCAAACAGACCGAACATTGTTCTGTGTTCCTGTTTATCACTTCTCCTCCCTCATCCTGTTTATAAAAAGCACTGTGAGATAA

Function

symbol description
zgc:171686 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-56 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000076721

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040195 True 1546 mRNA 0.39 6 9939901 9945637

Neighbor

gene id symbol gene type direction distance location
XLOC_020213 blf coding upstream 16209 9917007 ~ 9923692 (+)
XLOC_020212 NA coding upstream 35278 9897971 ~ 9904623 (+)
XLOC_020211 NA coding upstream 35403 9886745 ~ 9904498 (+)
XLOC_020210 si:dkey-253d23.4 coding upstream 59493 9871238 ~ 9880408 (+)
XLOC_020209 si:dkey-253d23.3 coding upstream 71194 9862243 ~ 9868707 (+)
XLOC_020215 BX539307.2 coding downstream 35442 9981079 ~ 9984032 (+)
XLOC_020216 NA coding downstream 44268 9989905 ~ 9991494 (+)
XLOC_020217 BX324216.1 coding downstream 49196 9994833 ~ 10006999 (+)
XLOC_020218 BX324216.4 coding downstream 64655 10010292 ~ 10014369 (+)
XLOC_020219 NA coding downstream 73263 10018900 ~ 10049233 (+)
XLOC_020205 NA non-coding upstream 148534 9782954 ~ 9791367 (+)
XLOC_020197 NA non-coding upstream 556417 9359899 ~ 9383484 (+)
XLOC_020196 BX927329.2 non-coding upstream 580498 9351372 ~ 9359403 (+)
XLOC_020221 NA non-coding downstream 127783 10073420 ~ 10097227 (+)
XLOC_020223 NA non-coding downstream 212826 10158463 ~ 10164865 (+)
XLOC_020226 NA non-coding downstream 269357 10214994 ~ 10222660 (+)

Expression


Co-expression Network