XLOC_020221


Basic Information

Item Value
gene id XLOC_020221
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10073420 ~ 10097227 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042071
AAACTGCTCAATATCTCCTCAGGGTTTCTCATTTTATTGGTTCTTATGTTTAACAACTAAATTCCAGCACAACCTATCTCTTCAGTTCCTGTCTCTGTGTAGCACTGCAAGTCATTACATGTGCCATCATACCATATAACTTCAGACAAACCGGCTTGCTTAAATTTAGCACACCTCTTTTTACTGAACCACTGATTCATGTTTTTGCCCTAGTTTAAACAGTAATTTATTTGTGTGCAGCATTTTTATGCAATCAGAAATCAATGTTATTTGTTGTGGTTAATAATATTTGCTTGAAAACAATTCCCATGACTGCTGTCTTTCCAGGATAAAGGGTGTGGCATCTGTAGTTGTCAGTTAAGTCTAGTGCTTCTTGTGTGTGATTGTGATAGAGGCAGAATCTCATATTTCAGTATTATGGCACTCAAGCTAGCATGACGTTGACAAGTGTTGTTTATTTGAATCAGAAAATCTGAAAATCTGTACTCTTTCAGATgtgaaatgtttaataaatcgTTATTTATAAATCGtttttgtacatatattttgctGGCAATGTTTCATTCATTCGTGTCCATGAAACGAAAGAGGCAACTATTGAATAATTATGTTACTGCCAGCTAGTGGCCACATCAGAGGATGACACCTTAtccttgtgtgtgtgagggaAGATTAGGTTATTGCAGGTCAACAACCATCGTTGCAATTTGATATCAGAGCTACaactaaaatatgaaaaataatacttGGGGGACCATTTCATTTGTCATCTAGATGGGTGTTCATAAGATGGATTAGAAAGACTCACCATTTAACAGGCGATGTCAATGTCATGTTTGTCAAAGATGCAACAAGAATCAAAATGTACACTGATTTGGGGATGTATAATTAAATTGAAGGCTGTAGTTCAAAAAGTTGAACtaaggtaaaaaacaaacaatggatCAACGCTCTATATCTATCAGCCACCAGAGGTCAGCAAAACGTCAgaaaagtgtttgactccaaaggACAGACCCACAGACTCTAATGAGATCCAAAAATGGAATTCACCAACAATTTTCTCAGcctgaaatatttcaaaacatcaaGTGTTTCTTTACtatgttggacacaaaagaagatactttcaAGAATGTTGATAATGAGCACTGTGAAAAATGCATTCCTTCAGGGCAGCTTTCTAAAGCAGGAATGCATCAAGGCACGCCTGAATCCAATTGTCTGAAGTCAGAAATTTCCTTCTCCTGACTGAATTTAAAAGCCAGCACAGATGTATAATTGGCTGTCTTTGCTATTTTACAATCTTGTGTGTTCAGATTCTGACAGTTATGTAATGAATTTGGCATCTGGAAGCTCAACTTGGGTGTCATTTTGTGTGCACTGTAAATGTACGTTTTATGAACAACGTATTGTAATTTTGATTTCCACTTTCTGGCGAGAAGTAATTGTAGTAAGTAAATATTCACTTAATTATCACCAAAGCTTTCGGTCGTTTGTTGTAGATGAATAAACCCTTGTATTGTCCAAGAAGACAGTCTGAGATGCCTTTGTGCACAAA
>TCONS_00042072
ACCcataatttactctcccttaaaTGGTTTCAAAACatcaaGTGTTTCTTTACtatgttggacacaaaagaagatactttcaAGAATGTTGATAATGAGCACTGTGAAAAATGCATTCCTTCAGGGCAGCTTTCTAAAGCAGGAATGCATCAAGGCACGCCTGAATCCAATTGTCTGAAGTCAGAAATTTCCTTCTCCTGACTGAATTTAAAAGCCAGCACAGATGTATAATTGGCTGTCTTTGCTATTTTACAATCTTGTGTGTTCAGATTCTGACAGTTATGTAATGAATTTGGCATCTGGAAGCTCAACTTGGGTGTCATTTTGTGTGCACTGTAAATGTACGTTTTATGAACAACGTATTGTAATTTTGATTTCCACTTTCTGGCGAGAAGTAATTGTAGTAAGTAAATATTCACTTAATTATCACCAAAGCTTTCGGTCGTTTGTTGTAGATGAATAAACCCTTGTATTGTCCAAGAAGACAGTCTGAGATGCCTTTGTGCACAAA
>TCONS_00040203
TTCCTTCCTACTGTATGTAACATTTGAATCAGTGTAACGGTGCTGACGTGCTCCGTACTGACACtgttcccagatcagcttctgtacacgcgatttgaagaggAGCGAAGGGGGTAGAGACCAcatattttcacatcccaatttTTGACAGTGATAGGTAAGGAAAGGAAATCCTGTTCAGAAAACCGTGTTTCGTCACTTGTAGTTTTACCACCGCAGGCTGTTCACCTTCTCGGATTACGGCATCATCATTTGACGTTTAATCATCAAAATGTTGAAGATTATTATTAGCAAATCCACGTTATGCCTGTTCCTGACGCTCATTTACGGTGTTTTTGGTGCTACAGATGAATTCAAGTCAGTATCAGTGACTGGGGGAGATTCTGTCACTTTAAACACCGATGTTACTGAAGTACAGAAAACTGATCAGATTCTGTGGATGTTTGGACCTGATGAGATTCGTATTGCTGAAATATATAAGCAGAGCATTGACATGTTTGACAGTAATGAGATATTTGGAGACAGACTGAAGATGGACAGTcgaactggatctctgaccatcacagaCATCAGAAATGAACATTCTGGACTTTATAAACTGAACTTCATCGGCAACCGAAATTCAATCAAGAGATTCAATGTTACTGTTTATGCTCCTCTTCCTGTTCCTGTCATCAGCAACATTCATTCAAACTCATCATCATCAGACTCCAGATGTTCAGTGTTGTGTTCAGTGTTGAATGTGAGtgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagtatcagtgtgtctgatctcagcatcagtctctctctacctctggagTTGGAATATCAGGATACAAACACCTACAGCTGTTTGGTCAACAACTCCATCACAAACCGCACCACACAACTGGACATCAGTCAACTCTGTCAGAGAAATAAAGAAACATCACATGCTGCTATTTTCCACCCTGGATTCATTTCTGCTTTAGTTCTGCCTGGACTTGCTGCTGCAGTGTACTTCCTATAAGCACAAAGGGAAAAATGCATGACTCATGTTCATgcactgtaacaaaaaaaaaaaaaaaaaaaaaatcaattagtaCTATTGCATTGGATTTTAACAAGTGAGGGTAATGACTGACCCTCTTAACTTTTTAGTTGATGTGGCGAACCAACAATGTCTGAGGTGATTCTCTTGAGCAAGGCACCGAACCCCCAACTGCTCCCTGGGTGTGTGTTTACGGGTGTAAATCACTTTGGGTAAAAGTGTCTGATAAATGTAAATACTCTCTCTATTTTCTCCTATAGATATATCTAGTCAATATTTTCTCATTATTTGCTTAGTTTTGCTTTGCTTTACACAGAAACTACTCAAGATCTCCTcagggtttttctttttattggttCTTACGGTTAACAACTAAATTCCAGCACATGCCATCTCTCCAGCTCCTGTCTATTCTGTTTGCAAACTGCAAGCCATTACATGTCCCGTCATTCCATATAATTTCAGACACACTGGGCTTGCTTAAATTTAACAGCTCTTTTACTGAACCACTGGTTCTTGTTTTTGCCCTAGTTTGAACAGTAATGTATTTGCAAATGTGCACAGCCTCAGCACAAaggtttttaaagtaattttcatGCAGTCAGAAATCATTGTTCGCAGTATTTCTCATTACTGTTGTTTTTCCAAGATTAAGTGTGCAGTTGTCAGGTAATGTGCTTCTTGTGATAAGTGTCAGAATCTCATATTTCAGTATTAATGGCACTCAAGTGAGCATATACAAGTTGCTGTTgcaacccagcaagcattttttgtttttaatagatgtTTAACAGacgttgtcttggctaaaacaaggataatttgggctgtcagtgaaaatctaatagacgaataggccaaaactagactagtcattgaataaacaaatgaatgaccacacatttaaagtctgtctattctatctatttgatgactagtctagttttgggctagacgtctattagattttcactgacagcccaagtcaGAGGTCAGaaaccttttttcagcaaagagcttttcagattttttttagcaaatacattttttaaaaaagccaTAAATCTGCATTTGCTACTGTTTTGTTACTATAAATAATACAGGTTTAAACAAAACCGTAATTTATGTTCAAGCACGACAAATATGAAGCATTACATTGTGCATGTCCATAAATGAAAAAAGAACGTCCTTTTATTGTTaagagtttttattcatttagctgTAAAAATTACAACTAAGAgggaattgtaattgtattttagaTAAGAAACTAATTTCTAGTGAtggttatatttttatataatattaatgtaataaaataataaactattattgaAGGAAGACAACTGGAGAGCCAcgtatttttggtcaaagagccacatgtggaTCGAGAGCCATAGGTTTCCTTCCACTGGCCCAAGttaagccttgttttagccaagacgactatgttttgATGTCTATTGAACAAAAACTTGTTCGCTGGGAATTGCCGTTTATCTTAATCAAAAAAAATCGGACACACTGTACTCTTTCAGATATGcaatgtttaataaattgttCTTTATGAATAGtttttgtacatatattttgctGGCAATGTTTCATTCATTCGTGTCCATGAAACGAAAGAGGCAACTATTGAATAATTATGTTACTGCCAGCTAGTGGCCACATCAGAGGATGACACCTTAtccttgtgtgtgtgagggaAGATTAGGTTATTGCAGGTCAACAACCATCGTTGCAATTTGATATCAGAGCTACaactaaaatatgaaaaataatacttGGGGGACCATTTCATTTGTCATCTAGATGGGTGTTCATAAGATGGATTAGAAAGACTCACCATTTAACAGGCGATGTCAATGTCATGTTTGTCAAAGATGCAACAAGAATCAAAATGTACACTGATTTGGGGATGTATAATTAAATTGAAGGCTGTAGTTCAAAAAGTTGAACtaaggtaaaaaacaaacaatggatCAACGCTCTATATCTATCAGCCACCAGAGGTCAGCAAAACGTCAgaaaagtgtttgactccaaaggACAGACCCACAGACTCTAATGAGATCCAAAAATGGAATTCACCAACAATTTTCTCAGcctgaaatatttcaaaacatcaaGTGTTTCTTTACtatgttggacacaaaagaagatactttcaAGAATGTTGATAATGAGCACTGTGAAAAATGCATTCCTTCAGGGCAGCTTTCTAAAGCAGGAATGCATCAAGGCACGCCTGAATCCAATTGTCTGAAGTCAGAAATTTCCTTCTCCTGACTGAATTTAAAAGCCAGCACAGATGTATAATTGGCTGTCTTTGCTATTTTACAATCTTGTGTGTTCAGATTCTGACAGTTATGTAATGAATTTGGCATCTGGAAGCTCAACTTGGGTGTCATTTTGTGTGCACTGTAAATGTACGTTTTATGAACAACGTATTGTAATTTTGATTTCCACTTTCTGGCGAGAAGTAATTGTAGTAAGTAAATATTCACTTAATTATCACCAAAGCTTTCGGTCGTTTGTTGTAGATGAATAAACCCTTGTATTGTCCAAGAAGACAGTCTGAGATGCCTTTGTGCACAAACACTGCCTCCAGAGTTACTACATGTTGGGGCAAATTCAGAAAATAACAACCAGTCAGCTGTCTAAGCTTTCGGATGCAgccaatggaagtcaatgtatCCGACAGTCTCCaaatcattttctttcttttttttgttgttgttgttgttgttcaacaagagaaagaaactgaaacaggTTTGAAAAATGCCACTGGTGAGTAaattgtgtcaaaaaaaaaaccttttgagGTGAACTAGACACCAGACATTAGCTTGACGTTAAGATCCAACATTGAAAGACATAAAGTATTGGTCCAGTATTGGTCAAATTAATGTCAAATTCTCCAGCACGATACTCTAGTTGACAGTATTATAATTTTGTCATTCTGAAATCAAATTTGacataataaatactgtaattagaGCGACAACCTTCATGCCCAACACAGCGTAAATCAATGAAGGAATCACATCATCAAATGGACTGTATAATTCTGgggaaagaagaaaaacacacCAGTTAAATCTCCTGATAAAGAAACTAAAGACTATTCATCTAAATTACCTCCCAATATATTACTAAACAGTATAGTTGTGATAAAGATGATGCAAGGGATTGAATACCTTTATCTGTTCGACAGAGTTGACTGATGTCCAGATGTGTAGTGTGGGTTTTGATGGTGTCATTGACcacacagctgtaggtgtttttatcctgatattccacctccagaggtagagacaggctgatgctgagatcagacacactgatgctggacaatacactgtttcctttgtaccaggagagactcacagcactcacattcaccactgaacacaaCAGCGAACATCTGGAGTCTGATAATGATGAGTTGGAGGAAGAGTTGGATGAAGAGTTTGAATATGTGCTGATAATGACAGGAACAGGAAGAACTAAAAAACATAAAGTACAATACTTAATTAGTTATAAAGTAATTGAGCAAATGTAGAGTTGAGCATAGTTTATCTGTGCTACTTCTGACAGATTCTTGATATAATTGCAAATTTAGGAAATGTATTTCTGCATCTCTATTCTTTAATGGTTACACCTGCAGGATTTCTTTATGTACcagaaaatattcaaaaataataaatcagtgtgtcagtgtgaCGTTGAACTCACCATAAACAGCAACATTGAATTTCTTGTATGAATTTGCTCTTCTACTGCTGATTATGTTTAGCTTATAAGGGCCAGAATGTTCATTTCTGATGtctgtgatggtcagagatccagtttgACTGTCTATCTTGAGTCTGTCTCCAAATGTTACATTACTGTCAAACATGTCAATGCTCTGTCTGTACATTTCAGCAATACGAGTCTCTCGAGGTCCAAACATCCACAGTATCTGATCAGTTCTCTGTACTTCAGTAACACCAGTGTTTAAAGTGACAGAATCTCCCTCAGTCACTGATACTAACTTGACTTCATCTGTagcaccaaacacacctgaaacacatATATGAAAAATTTATTTGACTGAGCTATTTCACTTTTATGGTTCATTTATTAACCTATTGTCTTTTCAACAGTAACTGTACAGTATGTTAACTATATGCAAAATGTGTTTTGACACAAATCAGTCAAAGTGGCAAATTAGAATAAATTAGACATATAAGATTACTTGCGCTGTAAACGATAAGTGACAAACATCTTACCTTCCATAGGAATAAAGAAGATTAAACCCAACATGTAGCATAACATCTTTGAAGAGTGACTGGCATGACTGTGGTTTCAGTTCTCAGAGCATACGGTGAAGATTCAGCCAATGACTGCTCATACTTTTGCAAGGAAGTCAAAATTAAGCTTAAAATGACGTTTCAAAGACCACTTTGAagccaaaaatatgtttgttttcatACTGACAATGAATTGGTTCAATGTACcaaatttattacaaatcttGTATTTTAC
>TCONS_00040204
gctttgtttttcttttcacttCTCAACAGTCGATTTCAGAGTTTGTAAGGACGTTTTTAACATCttgaaaatagttttaataattgtcatcatttaatctTCAAAATGTGCTTACAGTGATAGGTAAGGAAAGGAAATCCTGTTCAGAAAACCGTGTTTCGTCACTTGTAGTTTTACCACCGCAGGCTGTTCACCTTCTCGGATTACGGCATCATCATTTGACGTTTAATCATCAAAATGTTGAAGATTATTATTAGCAAATCCACGTTATGCCTGTTCCTGACGCTCATTTACGGTGTTTTTGGTGCTACAGATGAATTCAAGTCAGTATCAGTGACTGGGGGAGATTCTGTCACTTTAAACACCGATGTTACTGAAGTACAGAAAACTGATCAGATTCTGTGGATGTTTGGACCTGATGAGATTCGTATTGCTGAAATATATAAGCAGAGCATTGACATGTTTGACAGTAATGAGATATTTGGAGACAGACTGAAGATGGACAGTcgaactggatctctgaccatcacagaCATCAGAAATGAACATTCTGGACTTTATAAACTGAACTTCATCGGCAACCGAAATTCAATCAAGAGATTCAATGTTACTGTTTATGCTCCTCTTCCTGTTCCTGTCATCAGCAACATTCATTCAAACTCATCATCATCAGACTCCAGATGTTCAGTGTTGTGTTCAGTGTTGAATGTGAGtgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagtatcagtgtgtctgatctcagcatcagtctctctctacctctggagTTGGAATATCAGGATACAAACACCTACAGCTGTTTGGTCAACAACTCCATCACAAACCGCACCACACAACTGGACATCAGTCAACTCTGTCAGAGAAATAAAGAAACATCACATGCTGCTATTTTCCACCCTGGATTCATTTCTGCTTTAGTTCTGCCTGGACTTGCTGCTGCAGTGTACTTCCTATAAGCACAAAGGGAAAAATGCATGACTCATGTTCATgcact

Function

GO:

id name namespace
GO:0010872 regulation of cholesterol esterification biological_process
GO:0010873 positive regulation of cholesterol esterification biological_process
GO:0050878 regulation of body fluid levels biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0022610 biological adhesion biological_process
GO:0070527 platelet aggregation biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0072378 blood coagulation, fibrin clot formation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0070831 basement membrane assembly biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0031589 cell-substrate adhesion biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0016203 muscle attachment biological_process
GO:0051258 protein polymerization biological_process
GO:0043691 reverse cholesterol transport biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0030832 regulation of actin filament length biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0071711 basement membrane organization biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034109 homotypic cell-cell adhesion biological_process
GO:0034370 triglyceride-rich lipoprotein particle remodeling biological_process
GO:0034372 very-low-density lipoprotein particle remodeling biological_process
GO:0110053 regulation of actin filament organization biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0008064 regulation of actin polymerization or depolymerization biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0050817 coagulation biological_process
GO:0007155 cell adhesion biological_process
GO:0060047 heart contraction biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0042060 wound healing biological_process
GO:0043256 laminin complex cellular_component
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005577 fibrinogen complex cellular_component
GO:0005604 basement membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0070161 anchoring junction cellular_component
GO:0005178 integrin binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0060228 phosphatidylcholine-sterol O-acyltransferase activator activity molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko04080 Neuroactive ligand-receptor interaction
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050208-328 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000113572

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042071 False 1561 lncRNA 0.36 2 10073420 10095290
TCONS_00042072 False 511 lncRNA 0.36 2 10074865 10095290
TCONS_00040203 False 5590 mRNA 0.37 5 10090673 10097227
TCONS_00040204 True 1031 mRNA 0.40 4 10090841 10092702

Neighbor

gene id symbol gene type direction distance location
XLOC_020220 si:ch211-222k6.3 coding upstream 2124 10066846 ~ 10071296 (+)
XLOC_020219 NA coding upstream 24187 10018900 ~ 10049233 (+)
XLOC_020218 BX324216.4 coding upstream 59051 10010292 ~ 10014369 (+)
XLOC_020217 BX324216.1 coding upstream 66421 9994833 ~ 10006999 (+)
XLOC_020216 NA coding upstream 81926 9989905 ~ 9991494 (+)
XLOC_020222 tbc1d20 coding downstream 32561 10129788 ~ 10141469 (+)
XLOC_020223 NA coding downstream 61236 10158463 ~ 10164865 (+)
XLOC_020224 pxk coding downstream 69180 10166407 ~ 10199014 (+)
XLOC_020225 pdhb coding downstream 104599 10201826 ~ 10212502 (+)
XLOC_020226 NA coding downstream 117767 10214994 ~ 10222660 (+)
XLOC_020212 NA non-coding upstream 168797 9897971 ~ 9904623 (+)
XLOC_020211 NA non-coding upstream 168922 9886745 ~ 9904498 (+)
XLOC_020205 NA non-coding upstream 282053 9782954 ~ 9791367 (+)
XLOC_020228 NA non-coding downstream 203176 10300403 ~ 10354336 (+)
XLOC_020240 BX666064.1 non-coding downstream 985549 11082776 ~ 11085979 (+)
XLOC_020241 NA non-coding downstream 993401 11090628 ~ 11098487 (+)

Expression


Co-expression Network