LOC110507671 (LOC106606048)


Basic Information

Item Value
gene id LOC110507671
gene name LOC106606048
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13339565 ~ 13353635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035137.1
CCACAATAGCGTGCTcaaactcacactcacacacacactcacacacacacgcatccctattcacacacacttacacacacccctactcagacacactcacacacacccctactcagatacacacacacccctactcacacacacccctactCACACACCACATTGTCTGCGTTCGGCTCTCCCTTCCCACTCTGCCTACATCTCCCTTCCAGGATGCACAGACGACTGCTCTCTCTCTGGGTGACCGGGGCGCTGCTGCTACCCTTGTGCTGGGcaAACAAAGAGGACTATGAGGAAGAATATGATGACTATTCTACACAAACACCAGACTATGACTACACCGCCACCTTCGATTACACCTATTTCAGTAACACCACCGGCCATGAGGACTATAGTTTGTATGTAATTCTAGGAGAGAAGAAGAATGTGGAGGAGAAGGATCTTGAGAATAAGGCTTTAGCGATTGGCTCCCCATGCCCAGTGCTACTCCTCGGATTGGCTGCTCACCAACTCCATCGATTACTGTGAATGAAACCGAGCACTGCAGAACATACACAGATATACAGGACCCTGAATTGAGCAGAAAGTTACCAAATATTCTGGAATTGGACTGAGGAGAAAGCTACCCAATATTCTGGAATTGAACTGAGGAGAAAGTTACCCAATATTCTGGAATTGAACTGAGGAGAAAGTTACCCAATATTCTGGAATTGGACCTTTTTAAGGATCAAATGGACACAGCATGTGATTCTCCACCACTGACTTTCTATACTATAGTTGGAAAAACCCATAGTGACTCCTGAATCCTAACTTATGAAAGAAGCCCACAACTTTCATAAACTTTCATAAACTCATAAATTCATAAACATCTCCCATAATAATATTTGCATTGTATGCACGTCTCAAGTTGtaagatcaaatcaaaatcaaaatcaaatttatttataaagcccttcttacgccagctgatatcacaaagtgttgtacagaaacccagcctaaaacctcaaacagctagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccagaacctaggaagaaacctagagaggaaccagactatgaggggtggccactcctcttctggctgtgatgTGTCCCTTAGTCCCTTAGCACAAAGCCAATGTCCATCTTGTTTTGACTTCATACAAACTAATATGCATATTATACATGTTTATCTTTTAACACATCTTTTCCAAGTATGTTTTGTTTCTGTTTGATATTCTGTTATGAAATATAATGCTTTCTACAA
>TU131798
ATGACTATTCTACACAAACACCAGACTATGACTACACCGCCACCTTCGATTACACCTATTTCAGTAACACCACCGGCCATGAGGACTATAGTTTGTATGTAATTCTAGGAGAGAAGAAGAATGTGGAGGAGAAGGATCTTGAGAATAAGGCTTTAGCGATTGGCTCCCCATGCCCAGTGCTACTCCTCGGATTGGCTGCTCACCAACTCCATCGATTACTGTGAATGAAACCGAGCACTGCAGAACATACACAGATATACAGGACCCTGAATTGAGCAGAAAGTTACCAAATATTCTGGAATTGGACTGAGGAGAAAGCTACCCAATATTCTGGAATTGAACTGAGGAGAAAGTTACCCAATATTCTGGAATTGAACTGAGGAGAAAGTTACCCAATATTCTGGAATTGGACCTTTTTAAGGATCAAATGGACACAGCATGTGATTCTCCACCACTGACTTTCTATACTATAGTTGGAAAAACCCATAGTGACTCCTGAATCCTAACTTATGAAAGAAGCCCACAACTTTCATAAACTTTCATAAACTCATAAATTCATAAACATCTCCCATAATAATATTTGCATTGTATGCACGTCTCAAGTTGtaagatcaaatcaaaatcaaaatcaaatttatttataaagcccttcttacgccagctgatatcacaaagtgttgtacagaaacccagcctaaaacctcaaacagctagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccagaacctaggaagaaacctagagaggaaccagactatgaggggtggccactcctcttctggctgtgatgTGTCCCTT
>TU131799
ATGACTATTCTACACAAACACCAGACTATGACTACACCGCCACCTTCGATTACACCTATTTCAGTAACACCACCGGCCATGAGGACTATAGTTTGTATGTAATTCTAGGAGAGAAGAAGAATGTGGAGGAGAAGGATCTTGAGAATAAGGCTTTAGCGATTGGCTCCCCATGCCCAGTGCTACTCCTCGGATTGGCTGCTCACCAACTCCATCGATTACTGTGAATGAAACCGAGCACTGCAGAACATACACAGATATACAGGACCCTGAATTGAGCAGAAAGTTACCAAATATTCTGGAATTGGACTGAGGAGAAAGCTACCCAATATTCTGGAATTGAACTGAGGAGAAAGTTACCCAATATTCTGGAATTGAACTGAGGAGAAAGTTACCCAATATTCTGGAATTGGACCTTTTTAAGGATCAAATGGACACAGCATGTGATTCTCCACCACTGACTTTCTATACTATAGTTGGAAAAACCCATAGTGACTCCTGAATCCTAACTTATGAAAGAAGCCCACAACTTTAATTCATAAACATCTCCCATAATAATATTTGCATTGTATGCACGTCTCAAGTTGtaagatcaaatcaaaatcaaaatcaaatttatttataaagcccttcttacgccagctgatatcacaaagtgttgtacagaaacccagcctaaaacctcaaacagctagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccagaacctaggaagaaacctagagaggaaccagactatgaggggtggccactcctcttctggctgtgatgTGTCCCTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106606048

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035137.1 False 1294 mRNA 0.43 5 13339565 13353635
TU131798 False 841 lncRNA 0.41 4 13339714 13343791
TU131799 True 819 lncRNA 0.41 5 13339714 13343791

Neighbor

gene id symbol gene type direction distance location
LOC110513400 snrk coding downstream 14885 13250306 ~ 13324680 (-)
LOC118937736 NA coding downstream 20412 13316759 ~ 13319153 (-)
LOC118937744 NA coding downstream 89321 13246956 ~ 13250244 (-)
abhd5a LOC106573494 coding downstream 150553 13176165 ~ 13189012 (-)
LOC118937728 NA coding downstream 212438 13097545 ~ 13127127 (-)
LOC118937745 LOC106606096 coding upstream 52247 13304688 ~ 13453664 (-)
LOC110534058 LOC106593045 coding upstream 142964 13494448 ~ 13500298 (-)
LOC118937746 NA coding upstream 259990 13613625 ~ 13614107 (-)
LOC118937748 LOC106574107 coding upstream 297171 13650726 ~ 13661631 (-)
LOC110535394 LOC106574842 coding upstream 474644 13828279 ~ 13914376 (-)
G114814 NA non-coding downstream 9088 13329535 ~ 13330477 (-)
G114790 NA non-coding downstream 78179 13260705 ~ 13261386 (-)
G114780 NA non-coding downstream 97731 13238974 ~ 13241834 (-)
G114763 NA non-coding downstream 133858 13205490 ~ 13205707 (-)
G114865 NA non-coding upstream 126881 13480516 ~ 13480903 (-)
G114867 NA non-coding upstream 140175 13493810 ~ 13494259 (-)
G114911 NA non-coding upstream 150999 13504634 ~ 13512209 (-)
G114912 NA non-coding upstream 151375 13505010 ~ 13558642 (-)
G114913 NA non-coding upstream 153613 13507248 ~ 13511532 (-)
G114812 NA other downstream 7059 13330748 ~ 13332506 (-)
LOC110507534 LOC106606051 other downstream 245800 13086169 ~ 13094428 (-)
G114442 NA other downstream 600408 12735314 ~ 12739157 (-)
G114424 NA other downstream 630250 12707827 ~ 12709315 (-)
G114928 LOC106574568 other upstream 220900 13574535 ~ 13582606 (-)
G115431 LOC106574784 other upstream 608550 13962185 ~ 13976561 (-)
LOC110535427 LOC106585544 other upstream 703907 14046340 ~ 14080800 (-)

Expression


Co-expression Network