LOC110535394 (LOC106574842)


Basic Information

Item Value
gene id LOC110535394
gene name LOC106574842
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13828279 ~ 13914376 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962010.1
AGCCAGTGAAATCATCTTTGGGACTGTTCTCCAACCGTCTTTCAtaaagaggaaagggggagacacAACTACATTGAACGTCAAGAGGGCAGGCTCCTCTATCGCTGCTGATATAAACAATGGATTGAGAATGGGGTTTGGTTTTCTGTGTGGTGAAGTCATCTTTCTTAGCCGAGTTTGCTCAAATCGGAGCCTTTGAATTTGAAAAGTTTTTCTTGTCAGCATCACTCACTGGTTTGGGATTATTTTTGTTCATGTTTTTATAAGAACactcgccacacacacacaccatgagcaACATCTATGAGTCTGCGGCCAACACCCTTGGTCTGTTCAACAGCCCGTGCCTGGCCAAAGTGGAGCTGCGGGTGACCTGCAAGGGCATCTCAGACCGGGACGCCCTGTCCAAGCCAGACCCCTGCGTACTCATCAAAATGCAGTCCCACGGACAGTGGCTGGAGgttgACAGGACAGAGGTGATCCGTAGCTCCATAAGCCCCACCTTTTCTAAAGTCTTCACCGTGGACTTCTACTTTGAGGAAGTACAGCGGCTACGTTACGAGCTCTATGACATCAGCAGCAATCACAACGGCATCAAGGAGGCTGACTTTCTGGGGGCCATGGAGTGCACACTGGGACAGATTGTGTCCCAGAGGAAGCTCACCAAACCACTGCTCAAACAGGGCAGCACAGTGAGCAAGTCCTTCATCATGGTCACCGCCGAGGAGCTGACAGGGAATGATGATTATGTGGAACTTTCTTTCAGTGCCAGGAAACTTGACGACAAGGACTTTTTTAGCAAATCAGACCCTTTCCTGGAGATCTTCAGGATGAACGATGACGACACGCTACAGCTTGTGCACAGAACAGAGACTGTTATGAACAACCTTAACCCGGTGTGGAAAACCTTCAAGACTTCCCTGAATTCCCTCTGCAGTGGAGACCATGACCGGCCTCTAAAGtgcacaGTGTGGGACTGGGACTCCAATGGGAAGCACGACTATATTGGTGAATATCAGGCCACATTCAAAGAGATGAGAGGGGCAATGGATGGGAGACAGGTCCAATGGGAGTGTATAAACCCCAAGTATCAGATCAAGAAGAAGAATTACAAGAACTCTGGTATCGTCATTCTCAATCAGTGCAAGATCATCAAGATGCACTCCTTCCTGGATTACATCATGGGAGGCTGTCAGATCCAGTTTACAGTAGCTATTGATTTCACCGCCTCGAACGGAGATCCTCACAACAGCTGCTCCCTACACTACATCCACCCATACCAGCCTAACGAGTACCTCAAAGCTCTGGTCGCTGTAGGGGAGATCTGCCAGGATTACGACAGTGACAAAATGTTCCCAGCGTTTGGCTTCGGCGCTCAGATTCCGCCCGACTTCAAGGTTTCTCACGATTTTGCAGTGAATTTTAATGAGGAAAACCCAGAATGTGCAGGTATCCAAGGGGTGGTGGAGGCCTATCAGACATGCCTTCCTAAGCTTCAGCTCTACGGCCCCACCAACATCGCCCCCATCATCCAGAAAGTAGCCAGCTCCGCTTCACAGGAAATGCACACCAAGGAGGCCATGCAGTACTTCATTCTGCTCATCCTAACGGACGGAGTGATCACAGACATGGCAGACACCCGCGAGGCCATCGTCCAAGCCTCCCACTTGCCCATGTCCATCATTATTGTAGGCGTGGGAAGTGCTGACTTCAGTGACATGCAGATGCTGGATGGAGATGATGGAATCCTTCGCTCGCCCAAGGGGGAGCCCTGCCTACGAGACATCGTCCAGTTCGTCCCCTTCCGCAACTTCAAACATGGCTCACCTGCAGAGCTGGCGAAGACTGTCCTAGCAGAAGTGCCCAACCAGGTGGttgactactacaacaacaagGGCATCAAGCCCAAAGTGCCCAGTGAGTTCGAGTCTTCCAGGACATTCGCCCCCTGAGAGGAGGGGCCCAACGCACTCGATACAACAGATAGCACCTTACGCTGACTAACTGAAAAGTTTACCGTTTTGCTCTTCGTTTGTTTGTTCTTTTCATTGTGCATGCGTGGCCTCCGAGGCTTGCATCTGTAAAGCAACTGTATCATTCAAAGCATTGGTATGGTGGGGGGACACACAAACGAACAACCAAACTGTCATCCCTACAGATGAACAACTATCGATGAAGGAATGTATAGAACACCCCCGTTCCTTTTTTTATAAGAGTTTGTTGAGATTTTGCTAAATTTCTTGATATTCATACATTGTAAAACATTTTGGACCACAGTGAATGAACTAGCTACCTGCGTTTAGAAACGTCTGCGTCCTCAGTAGTCCATATTGCAGATAAGGCAGATGCATGAAGTGTTGTTTTGCATGCTGGTAATAAAGCAGACACTGTTTTCTCATGGTTCATGTTGTTTTCTTAGTGAACAATAGAGTTGACAGTATTGTAGGGATAAAGGACATTCTACTATGAAGCATGTTGACAGCACAAATTGAGTATTCTGGAAGTTCACTGGAGAATATTATGGCCACATAATTTTCCGTTGTCATGTTGCAATGCAGTATTCTGTGAAATGATGAATTACTTATAATAATAAAAGCTTTATCAATA
>XM_036962016.1
GGGAGCCAGTGAAATCATCTTTGGGACTGTTCTCCAACCGTCTTTCAtaaagaggaaagggggagacacAACTACATTGAACGTCAAGAGGGCAGGCTCCTCTATCGCTGCTGATATAAACAATGGATTGAGAATGGGGTTTGGTTTTCTGTGTGGTGAAGTCATCTTTCTTAGCCGAGTTTGCTCAAATCGGAGCCTTTGAATTTGAAAAGTTTTTCTTGTCAGCATCACTCACTGGTTTGGGATTATTTTTGTTCATGTTTTTATAAGAACactcgccacacacacacaccatgagcaACATCTATGAGTCTGCGGCCAACACCCTTGGTCTGTTCAACAGCCCGTGCCTGGCCAAAGTGGAGCTGCGGGTGACCTGCAAGGGCATCTCAGACCGGGACGCCCTGTCCAAGCCAGACCCCTGCGTACTCATCAAAATGCAGTCCCACGGACAGTGGCTGGAGgttgACAGGACAGAGGTGATCCGTAGCTCCATAAGCCCCACCTTTTCTAAAGTCTTCACCGTGGACTTCTACTTTGAGGAAGTACAGCGGCTACGTTACGAGCTCTATGACATCAGCAGCAATCACAACGGCATCAAGGAGGCTGACTTTCTGGGGGCCATGGAGTGCACACTGGGACAGATTGTGTCCCAGAGGAAGCTCACCAAACCACTGCTCAAACAGGGCAGCACAGTGAGCAAGTCCTTCATCATGGTCACCGCCGAGGAGCTGACAGGGAATGATGATTATGTGGAACTTTCTTTCAGTGCCAGGAAACTTGACGACAAGGACTTTTTTAGCAAATCAGACCCTTTCCTGGAGATCTTCAGGATGAACGATGACGACACGCTACAGCTTGTGCACAGAACAGAGACTGTTATGAACAACCTTAACCCGGTGTGGAAAACCTTCAAGACTTCCCTGAATTCCCTCTGCAGTGGAGACCATGACCGGCCTCTAAAGtgcacaGTGTGGGACTGGGACTCCAATGGGAAGCACGACTATATTGGTGAATATCAGGCCACATTCAAAGAGATGAGAGGGGCAATGGATGGGAGACAGATCATCAAGATGCACTCCTTCCTGGATTACATCATGGGAGGCTGTCAGATCCAGTTTACAGTAGCTATTGATTTCACCGCCTCGAACGGAGATCCTCACAACAGCTGCTCCCTACACTACATCCACCCATACCAGCCTAACGAGTACCTCAAAGCTCTGGTCGCTGTAGGGGAGATCTGCCAGGATTACGACAGTGACAAAATGTTCCCAGCGTTTGGCTTCGGCGCTCAGATTCCGCCCGACTTCAAGGTTTCTCACGATTTTGCAGTGAATTTTAATGAGGAAAACCCAGAATGTGCAGGTATCCAAGGGGTGGTGGAGGCCTATCAGACATGCCTTCCTAAGCTTCAGCTCTACGGCCCCACCAACATCGCCCCCATCATCCAGAAAGTAGCCAGCTCCGCTTCACAGGAAATGCACACCAAGGAGGCCATGCAGTACTTCATTCTGCTCATCCTAACGGACGGAGTGATCACAGACATGGCAGACACCCGCGAGGCCATCGTCCAAGCCTCCCACTTGCCCATGTCCATCATTATTGTAGGCGTGGGAAGTGCTGACTTCAGTGACATGCAGATGCTGGATGGAGATGATGGAATCCTTCGCTCGCCCAAGGGGGAGCCCTGCCTACGAGACATCGTCCAGTTCGTCCCCTTCCGCAACTTCAAACATGGCTCACCTGCAGAGCTGGCGAAGACTGTCCTAGCAGAAGTGCCCAACCAGGTGGttgactactacaacaacaagGGCATCAAGCCCAAAGTGCCCAGTGAGTTCGAGTCTTCCAGGACATTCGCCCCCTGAGAGGAGGGGCCCAACGCACTCGATACAACAGATAGCACCTTACGCTGACTAACTGAAAAGTTTACCGTTTTGCTCTTCGTTTGTTTGTTCTTTTCATTGTGCATGCGTGGCCTCCGAGGCTTGCATCTGTAAAGCAACTGTATCATTCAAAGCATTGGTATGGTGGGGGGACACACAAACGAACAACCAAACTGTCATCCCTACAGATGAACAACTATCGATGAAGGAATGTATAGAACACCCCCGTTCCTTTTTTTATAAGAGTTTGTTGAGATTTTGCTAAATTTCTTGATATTCATACATTGTAAAACATTTTGGACCACAGTGAATGAACTAGCTACCTGCGTTTAGAAACGTCTGCGTCCTCAGTAGTCCATATTGCAGATAAGGCAGATGCATGAAGTGTTGTTTTGCATGCTGGTAATAAAGCAGACACTGTTTTCTCATGGTTCATGTTGTTTTCTTAGTGAACAATAGAGTTGACAGTATTGTAGGGATAAAGGACATTCTACTATGAAGCATGTTGACAGCACAAATTGAGTATTCTGGAAGTTCACTGGAGAATATTATGGCCACATAATTTTCCGTTGTCATGTTGCAATGCAGTATTCTGTGAAATGATGAATTACTTATAATAATAAAAGCTTTATCAATA

Function

NR:

description
PREDICTED: copine-4 isoform X2

GO: NA

KEGG:

id description
K24525 CPNE4_6_7; copine 4/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962010.1 False 2607 mRNA 0.48 16 13828279 13914373
XM_036962016.1 True 2523 mRNA 0.48 15 13828279 13914376

Neighbor

gene id symbol gene type direction distance location
LOC118937748 LOC106574107 coding downstream 166648 13650726 ~ 13661631 (-)
LOC118937746 NA coding downstream 214172 13613625 ~ 13614107 (-)
LOC110534058 LOC106593045 coding downstream 327981 13494448 ~ 13500298 (-)
LOC118937745 LOC106606096 coding downstream 374615 13304688 ~ 13453664 (-)
LOC110507671 LOC106606048 coding downstream 474644 13339565 ~ 13353635 (-)
LOC110534076 LOC106605869 coding upstream 11805 13926181 ~ 13935276 (-)
LOC110535382 ci023 coding upstream 21462 13935838 ~ 13937539 (-)
LOC110535305 LOC106574784 coding upstream 42654 13957030 ~ 13960254 (-)
LOC110534084 LOC106574737 coding upstream 66910 13981286 ~ 14027878 (-)
LOC110535427 LOC106585544 coding upstream 131964 14046340 ~ 14080800 (-)
G115041 NA non-coding downstream 22401 13805665 ~ 13805878 (-)
G115031 NA non-coding downstream 31758 13796216 ~ 13796521 (-)
G115030 NA non-coding downstream 32220 13795775 ~ 13796059 (-)
G115021 NA non-coding downstream 42700 13785353 ~ 13785579 (-)
G115015 NA non-coding downstream 53206 13774771 ~ 13775073 (-)
G115414 NA non-coding upstream 4743 13919119 ~ 13919725 (-)
G115443 NA non-coding upstream 102458 14016834 ~ 14017064 (-)
G115450 NA non-coding upstream 117590 14031966 ~ 14033473 (-)
G115460 NA non-coding upstream 122985 14037361 ~ 14119171 (-)
G114928 LOC106574568 other downstream 245673 13574535 ~ 13582606 (-)
G114812 NA other downstream 495773 13330748 ~ 13332506 (-)
LOC110513400 snrk other downstream 504956 13250306 ~ 13324680 (-)
G115431 LOC106574784 other upstream 47809 13962185 ~ 13976561 (-)
G115492 NA other upstream 309483 14126196 ~ 14224919 (-)
LOC110535605 LOC106574865 other upstream 495390 14408991 ~ 14418164 (-)
tmem245 LOC106595499 other upstream 611692 14508116 ~ 14526558 (-)

Expression


Co-expression Network