LOC118937745 (LOC106606096)


Basic Information

Item Value
gene id LOC118937745
gene name LOC106606096
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13304688 ~ 13453664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938437.1
ATGACTCCGTAGCCCTGCAGCTTGGGGTTTAGAGAGATTGAGCCATCGAGTTACAGAGCGGGGGAGAAGGCTATCCAGTCTCCCAGCTGCATGCTCTCTAATAACCAAAGCCtcggtgaagagaggagagggagagggagggggactcAATAGGGAGGCAATGAAACGGACTCATCCGCGTAACTAGACACTACCAGTCCAGTTCAGTGTTCAGAGCATGCGAGAGCGTAGCTAGACCAACCGCATTCAGTTATATCTAcaaaggaatagagagggagaaaatagaaGTGTTCCAGCCTAGGGAGGCGGCGAGGAAAGGAGCAAGACATAGGCTACTGGCGGCTTTCGAGCGTCACAGGCATATACACCCCGTGTCCAGAATTTACGGCCATTCTTGGCATCAGCCTGTTGTACAAAATTGCGGATTTATAACTGAGTGAATTCGGGGATAGTCATCGACAGTCCTATCCTTCACAATGAAGAAAAACAATTCAGCTAAACGGGGCCCGCAGGACACAAACCAGCACAACACGCAGCCAGACAAAATCGGTTGGATTCGCAAGTTCTGTGGCAAAGGGATATTTAGGGAGATCTGGAAAAATCGTTTTGTAATACTCAAAGGGGACCAACTTTACATCTCAGAGAAAGAGGTGAAGGATGAGAAGAAGATCCAGGAGGTGGTTGACCTGACGGATTACGAGCGTTCTGAGGAGCTCCGCAAGGCCAAGAGCCGCAGCAAGAAGAACCACAGCAAGTTCACCCTGCTGCGCTCCAGAACCCCAGGCAACACGGTCCCTAACCTGGTGTTCCTGGCTGTTAGTCCAGAGGAGAAGGAGTCCTGGATAAACGCCTTAAATGGAGCAATCACCAGATCCAAGAACAGCATCCTGGATGAGGTCATGGTTGAGGATGAAAACCTTCTGTCCCATCTCACACGGGACAGGGCTAAGATCCCTCACACACGGCGCCTGCCTACACGAGGACACATCATGGCTGTGGCCTCCACTTCTACCTCTGACGGCATGTTGACCCTTGACCTGATCCAGGAGGAGGACAGCCCCAGCACAGACGGCCAGGACACCTGTGACAAGAGCTTCCGGGCCAACCTGGACAAATCCACTCAGCTCGACTGCCTCAGGTCCAAAACAGAGGGTGCCATCAGTAGCATCTGTCTAACACCTCCCACAGAGGTCACTGGGAAGTCCCAGAGCCTGCCGCGCGATACCGGGGTCACCTGGGACGATAAACAGCAACTTCAGATGGGGAAGTCCTGCACTCCTCAGCCAGGCAAGAGGCTCACACCGGCCGAGAAAAGCCGCTGCGCCTCCATGGACGAGATCCTCTCACACTCCGGGACACAGGCCACCAAACCCAGGACATCCATCCCCCGCTCTGCCACCTCTGCCCCCCCGGGCAACCTGCCGCCCATCAGCCAGCTGCAGGACCTAATCGCTCAGAAGCTGGAGAGAACTCAGGAGCTGCTGATGCAGGTGCAGGGGGcgaagggggaggaggtggagcgggggaaggggaaagggaagGACTCGCCAGGTTCCAAGGGCTCCAAGGGTTCCTCGGACGGGGCCCGGGCGGAGGCAGAGAGGCTGCTGAAGGAGGCAGCGTCCACATGGGGTCAGGCCAAGGATGTTCTAGAGGAGGTGAAGGAGCTGAGGGCGCTCTACCGTCAGCTGGACTCACTGCCCAccacccctgcctccctctcacccctcacACCCTCCAACAGCGGCAAGCAGACTGACTACAGGAAGAGCATGATGTGACCGTCAGAGAACTCAACACAGACTGGACTATGAATCCCTGAGCAAAAAAACAACTCAACATGCAAAGCCACAATATTGTTAAATatgtctgtttctctccttctgCGTTCTTTCACTTTATTGATGCTGTGACAAAGTGAGGACATTCAGTTGCCCAACGACGTCCCCTGTGCTTGACCACTGTGCCCTTACATGTCTGCTTGGTGAAGGGTGTGGGGGGCAAAGGGAAGGGGCCGATCTAGGGACTCAGGTACATGTTGGCCAGGGAGTCTCTCTGTATTGACCTGCTGATGAAAGACCTTGTGATGCTGCAGTGTCGGGGGTTGTTTTCCTCCGCGTTGGTTGTCAAAGAGGGGATGTTGCAAGGTTTGGGCGGGGAATCAGAAGGGCTCTGCTCTCCAGGGACAGACACACAGTGGTTGAGGATGACTCAGATTACAGGAAGGGAAACATGGTGTCCAGACCAGCCCGTATGTTGGGAATGTCAATGTTTTCCTTTTTCTGTTACACAACACACTGGAAGGTTCCCAACGAACACCACTCTAAAAACCAACAGCAGCCCACTGTACAGTGCagcattctccctccctccctccgtctgctGCTCTGGGAATGGAGCTCAGTGGACTCCTCATCTCTGCTGGTCCATTATGATTCACAGGGACAAGGGGAACCAGTTCACATAGTCAGAACTCACTGGCGTTCCATAGGGTGTTTCTGTCTGTTCCATGAGCCATATGATACAGTCAAAATGGAGGACGTCTGTCTGGGTTGTCTTGTTACTAGATGGTACATACTAGGACAGGGCTGTTCCTTTCCTGTAGGCCTACAGCCAGTTGTCTTCAGCCAGTTGCCACTGCAGCCATTGATTCTCATGCTGCTGTAGAGCCATGGAGCCGGGAtggcgtctgtgtgtgtctggtgtgagtGGTGATGATCATGCTACTGTAGAGCCATGGAGCCGGGAtggcgtctgtgtgtgtctggtgtgagtGGTGATGATCATGCTACTGTAGAGCCATGGAGCCGGGATGGcgtatgtgtgtgtctggtgtgagtGGTGATTATCATGCTACTGTAGAGCCATGGAGCCGGGAtggcgtctgtgtgtgtctggtgtgagtGGTGATTATCATGCTACTGTAGAGCCATGGAGCCGGGAtggcgtctgtgtgtgtctagtgtgagGGGTGATTATCATGCTACTGTAGAGCCATGGAGCCGGGATgacgtctgtgtgtgtctggtgtgagtGGTGATTATCATGCTACTGTAGCGCCATGGAGCCGGGAtggcgtctgtgtgtgtctggtgtgagtGGTGATTATCATGCTACTGTAGAGCCATGGAGCCGGGAtggcgtctgtgtgtgtctggtatgAGTGGGAGGCATGACATAGAGGTCAGATGCAGTACTGAGGAGAGGAACCACTTGTAAGTGATTTGCTAAAATCGTAATAATAACAGAATTGCACTATGAAGGAAGGCTGTAAAACAAGAGGATGAAACTGGTGGGTGGAAACTGGAGAGAACAGATGTGTCTAATATGGCTTTTCATTCTGTTCTACATATTTGTTACGACAATCTAGTGTGTCTAGAAACATACAGGCTGCATAGTTCCAACGCCTTGATACCTAAGACAGTCGCTCAACTCGCTACTCTTTGAAAATCTGAGCTTCTCAAAGGTACAATGTGTGTAAACAATGCTGTTGATGAACGCATCCCTCCGGCTAGCTAACAGTGATGCTAAcgcttgacctctgacctccctGGCCTACTTAAGGACTTATAGGGTTTATGGCAGAGAAGAGAGCTATGCAACATAGCAcgaacacacacaaccacaatgagagagagagagagagagagagagagagagagagcggccaATGGACTGCGTCGCCCGATCAAAACATCCAGTGCGTCTCTCCAGAGCACCCCGCCTTGTTTTATAGTCAGTAGCTACATATGTTATGTGTTTGCACAGTGCTGTGGAAATGGTTCGCTCTGGACTGTCAGACAGACAACAAAAACAGTGTTATGATTATGTTGTTATCATTGtttgtgttttttatttgtttaaaatgCTTTTGTAGGATGATTTAAGGCACGCTTTAGAGAAGAAAATGGCTGTGGCATTCTAGAACGTTCAGGCTCTTAGAATGCTCAACTGGAAACTCTGCATATTGTAGTGTTACTCTGTTTGTTCAACCAACAACCACAACCCAATAACAGAAGTCAAAAATCATAAACGTTGAAGTTGGATATGGACATAAAAGAGGGTGAGGTGAGAAAGGTATGTTAGAAAGAACACAACAGGAAACATTTAACTGAGTAGGCCATAAACAATATTTTTACTAGTACGtctattattgttgttgttatttcgTTTTATCTGGGATGGAGTACTATCTTGTGTGAGGCTGAACACAAAACCTAACGTTTGTGCAATCCTGAAAAGATTGATATGACCGCCGATGCACTGTACATACTCTGAGCAGTTTGAATCATCCCAAAGGATGTTGCTGTATTTTCTTATTGCGTTGCATTATGATGGAGTCGGAAGTGGCTTTGCTCTGAAGTTCATCTCTTCTGGACTGTCAAAGTACTTGAGACATAACCACTTGTGCAATTATAACAATCAGCCTAATTCAGACAACCAGTGTTCTACATTGAATGTTTGCTTTTTTAAGTCAAAACCTAGCCGAGAATTGTAATAAAAAGATTTTTGTATGTCCATTCAGAAGAATACCCTACTGGAATATAGGGCTGGTTTTCATAGGAAATGCTGAGGTAGGAAGTGATTGATCCAAGCGTTGTTTTTATGGCAGCAATAATACCATCTTCAAGCTATGCCAAAGATAATATGGCTGTACAAGGAAATAAAACTATTCCCATTGAAATACTTTGATAATGTAAATAAGGATGTTTCATATTTTCTAGTTGACAATGTGAATGTCAGCCTACTTGTTCTGACAACCATACCACATGCTTGGTCACACCAACTCCAACCTTAATAATCCATCAAACACCAAGTCAATTTACCCTCTTCTACAGCTGGCAATGCATTCTgggatataataataatataatatatgccatttggcAGACCCCTTTATCAAAAGCAAtttacagtcatgcatgcatcCATTTTATGTATGGGTGGCCCCTGGATTCGAACCCTCAGGTATGGCagtacaagcaccatgctctaccacctgagccatacaggaccagGATACAGGATCTGTGGCCACAAGTTGTGAAATCCAGCCAATGTTGGCCACACATGGTCACACACAAACGCAAAACATTCAATCATGACTGTTTTCTTATTTCTGTAAGGTGAAATGTCTTCCTTCGTTTTATGTATGACATGTTATGTTGTCATATTTTCAGTTTCCTTTCCAATTCTGTTCACCAAATGTGGGTCTGTCACCAAAACAGTAGCTACCGCAGCCTTAAATACCAAGAGGAATGTAGGAAAGTTACTCAGCAACTACAATGATTGTCCCCCAGCTATTTACAAAATCCTAATTCTTGTGCATTATGGATGAGATAAAGATTGTACCATAGGAATACAATAGCAGAGTACGAGCTAGGTGGATTACTAGATGGGAATGGAGAAGGCATTGTACACAGACTCAGAGGTTGAAATCCTGCTCCCTCAGGGTTCCATTTTAATAAATTGTGCTAAACAAAAGAAA
>TU131783
gggtttttcttttttcattggGATATGACAGAAGTCCAGGGTACCAAGTTGGATTCAGGACAGAAGAGACCATTAACTGTGTTCCTGCTTATCACCAGGTCCTTCTGAGAGATTGGGTCCACCTGAGCTTTAGAATGTGACTAAACTGGTCCAAAATTACCTCCGTGTAGCCTGAATACGAATTAGCTCTTTAAACCCACCTCTAGGGCTTCTTTGATGACGATCAGAGCTAGATTAAGAGACCTGAAAACTACATTACCCAGAGATGTGAAAACTACATCACCCAGAGTCATCTGCAGCCCTAGcacaatacataaaaaaaaattttaaaaaaatta
>TU131781
gggtttttcttttttcattggGATATGACAGAAGTCCAGGGTACCAAGTTGGATTCAGGACAGAAGAGACCATTAACTGTGTTCCTGCTTATCACCAGGTCCTTCTGAGAGATTGGGTCCACCTGAGCTTTAGAATGTGACTAAACTGGTCCAAAATTACCTCCGTGTAGCCTGAATACGAATTAGCTCTTTAAACCCACCTCTAGGGCTTCTTTGATGACGATCAGAGCTAGATTAAGAGACCTGAAAACTACATTACCCAGAGATGTGAAAACTACATCACCCAGAGTCATCTGCAGCCCTAGcacaatacataaaaaaaaaacaatttaaaaaaaacttacaAATCGGCTGTTTGTGGAATTAGAAGTGAATTGATGACACCGTGATCAGACAAACTTTAAAGGTATCAAATCCCAGGTCCTAAACAAAGTACTTAGGAAACAGTCAGCAATCCCTACAATACAGCGGGTACATATAGTGTAGGTGAACAGATAGGAGGGGCTAACGACTCACTAAGGTTATTTTTTGCCCGGGTCACTGTTAAACAGTACTCGTTGGCCACCTgtaaaccagtggaggctggtgggaggagctacaggaggattgtaatggctgaaatggaaccGAGTCAAACGTGTGGTTTCCGTATGTTTGATGTGGTTGATACCCGAGTggcacagaggtctaaggcactgcatatcagtgctagAGTCGTAACTACAGACcgtggttcaattccaggctgtatcacaaccggctacgattgggagtcccgtagggtggcgcacaattggcccagcattgtccgggttaggggttggccgtcattgtaaataaatatttgttcttaactgacttgcctagttaaataaatgttacattTTAAGCCAgaacaatgagcctgtcctcctatagctcctcccataTAAACCTTACTATGAGCCAACCAGACAGCACATGGAGCTTTTCGCTTGACAACTAAAGTCTTGGGAGAACATGGCATAGGAGACAATCACAACCAGATGGACTTGAAATGGGCCGCTACAACTTCTCACCAGAGTTAAACATCACCTTGTCTGAATGCTATAGCCCCTCCCCACATGTCATGTTTCAAAACCACATTCCATTTTATAATTCTAACCCGCTTTTCTTTTTATATGGAACATTTACaaaacaaattaaaaacatttagattctacagtaatatctatggtatacaaaaaaaaaaattcacaaaCTATTTCCTGTTCCTGTTGTTCTAGCCTAGTTGTGATCCCATGCTCGGTTACAGGAGGGGCTAATCGTCATCTCCATCGCTGTCATCTCCCTCATCCTCTGCATCCctcttccttttctctccctgGACTCCTactccatcctcttcctcctcctcttcaacaTAGTCATCATCATCTTCCTCATCCTAGGGCCAGAGAACA
>TU131780
TCAGAACTCACTGGCGTTCCATAGGGTGTTTCTGTCTGTTCCATGAGCCATATGATACAGTCAAAATGGAGGACGTCTGTCTGGGTTGTCTTGTTACTAGATGGTACATACTAGGACAGGGCTGTTCCTTTCCTGTAGGCCTACAGCCAGTTGTCTTCAGCCAGTTGCCACTGCAGCCATTGATTCTCATGCTGCTGTAGAGCCATGGAGCCGGGAtggcgtctgtgtgtgtctggtgtgagtGGTGATGATCATGCTACTGTAGAGCCATGGAGCCGGGAtggcgtctgtgtgtgtctggtgtgagtGGTGATGATCATGCTACTGTAGAGCCATGGAGCCGGGAtggcgtctgtgtgtgtctggtatgAGTGGGAGGCATGACATAGAGGTCAGATGCAGTACTGAGGAGAGGAACCACTTGTAAGTGATTTGCTAAAATCGTAATAATAACAGAATTGCACTATGAAGGAAGGCTGTAAAACAAGAGGATGAAACTGGTGGGTGGAAACTGGAGAGAACAGATGTGTCTAATATGGCTTTTCATTCTGTTCTACATATTTGTTACGACAATCTAGTGTGTCTAGAAACATACAGGCTGCATAGTTCCAACGCCTTGATACCTAAGACAGTCGCTCAACTCGCTACTCTTTGAAAATCTGAGCTTCTCAAAGGTACAATGTGTGTAAACAATGCTGTTGATGAACGCATCCCTCCGGCTAGCTAACAGTGATGCTAAcgcttgacctctgacctccctGGCCTACTTAAGGACTTATAGGGTTTATGGCAGAGAAGAGAGCTATGCAACATAGCAcgaacacacacaaccacaatgagagagagagagagcggccaATGGACTGCGTCGCCCGATCAAAACATCCAGTGCGTCTCTCCAGAGCACCCCGCCTTGTTTTATAGTCAGTAGCTACATATGTTATGTGTTTGCACAGTGCTGTGGAAATGGTTCGCTCTGGACTGTCAGACAGACAACAAAAACAGTGTTATGATTATGTTGTTATCATTGtttgtgttttttatttgtttaaaatgCTTTTGTAGGATGATTTAAGGCACGCTTTAGAGAAGAAAATGGCTGTGGCATTCTAGAACGTTCAGGCTCTTAGAATGCTCAACTGGAAACTCTGCATATTGTAGTGTTACTCTGTTTGTTCAACCAACAACCACAACCCAATAACAGAAGTCAAAAATCATAAACGTTGAAGTTGGATATGGACATAAAAGAGGGTGAGGTGAGAAAGGTATGTTAGAAAGAACACAACAGGAAACATTTAACTGAGTAGGCCATAAACAATATTTTTACTAGTACGtctattattgttgttgttatttcgTTTTATCTGGGATGGAGTACTATCTTGTGTGAGGCTGAACACAAAACCTAACGTTTGTGCAATCCTGAAAAGATTGATATGACCGCCGATGCACTGTACATACTCTGAGCAGTTTGAATCATCCCAAAGGATGTTGCTGTATTTTCTTATTGCGTTGCATTATGATGGAGTCGGAAGTGGCTTTGCTCTGAAGTTCATCTCTTCTGGACTGTCAAAGTACTTGAGACATAACCACTTGTGCAATTATAACAATCAGCCTAATTCAGACAACCAGTGTTCTACATTGAATGTTTGCTTTTTTAAGTCAAAACCTAGCCGAGAATTGTAATAAAAAGATTTTTGTATGTCCATTCAGAAGAATACCCTACTGGAATATAGGGCTGGTTTTCATAGGAAATGCTGAGGTAGGAAGTGATTGATCCAAGCGTTGTTTTTATGGCAGCAATAATACCATCTTCAAGCTATGCCAAAGATAATATGGCTGTACAAGGAAATAAAACTATTCCCATTGAAATACTTTGATAATGTAAATAAGGATGTTTCATATTTTCTAGTTGACAATGTGAATGTCAGCCTACTTGTTCTGACAACCATACCACATGCTTGGTCACACCAACTCCAACCTTAATAATCCATCAAACACCAAGTCAATTTACCCTCTTCTACAGCTGGCAATGCATTCTgggatataataataatataatatatgccatttggcAGACCCCTTTATCAAAAGCAAtttacagtcatgcatgcatcCATTTTATGTATGGGTGGCCCCTGGATTCGAACCCTCAGGTATGGCagtacaagcaccatgctctaccacctgagccatacaggaccagGATACAGGATCTGTGGCCACAAGTTGTGAAATCCAGCCAATGTTGGCCACACATGGTCACACACAAACGCAAAACATTCAATCATGACTGTTTTCTTATTTCTGTAAGGTGAAATGTCTTCCTTCGTTTTATGTATGACATGTTATGTTGTCATATTTTCAGTTTCCTTTCCAATTCTGTTCACCAAATGTGGGTCTGTCACCAAAACAGTAGCTACCGCAGCCTTAAATACCAAGAGGAATGTAGGAAAGTTACTCAGCAACTACAATGATTGTCCCCCAGCTATTTACAAAATCCTAATTCTTGTGCATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938437.1 False 5488 mRNA 0.48 6 13405882 13453664
TU131783 False 338 lncRNA 0.41 3 13304688 13390936
TU131781 False 1442 lncRNA 0.43 2 13386169 13390936
TU131780 True 2519 lncRNA 0.42 3 13406039 13408902

Neighbor

gene id symbol gene type direction distance location
LOC110507671 LOC106606048 coding downstream 52247 13339565 ~ 13353635 (-)
LOC110513400 snrk coding downstream 81202 13250306 ~ 13324680 (-)
LOC118937736 NA coding downstream 86729 13316759 ~ 13319153 (-)
LOC118937744 NA coding downstream 155638 13246956 ~ 13250244 (-)
abhd5a LOC106573494 coding downstream 216870 13176165 ~ 13189012 (-)
LOC110534058 LOC106593045 coding upstream 42935 13494448 ~ 13500298 (-)
LOC118937746 NA coding upstream 159961 13613625 ~ 13614107 (-)
LOC118937748 LOC106574107 coding upstream 197142 13650726 ~ 13661631 (-)
LOC110535394 LOC106574842 coding upstream 374615 13828279 ~ 13914376 (-)
LOC110534076 LOC106605869 coding upstream 472517 13926181 ~ 13935276 (-)
G114814 NA non-coding downstream 75405 13329535 ~ 13330477 (-)
G114790 NA non-coding downstream 144496 13260705 ~ 13261386 (-)
G114780 NA non-coding downstream 164048 13238974 ~ 13241834 (-)
G114865 NA non-coding upstream 26852 13480516 ~ 13480903 (-)
G114867 NA non-coding upstream 40146 13493810 ~ 13494259 (-)
G114911 NA non-coding upstream 50970 13504634 ~ 13512209 (-)
G114912 NA non-coding upstream 51346 13505010 ~ 13558642 (-)
G114913 NA non-coding upstream 53584 13507248 ~ 13511532 (-)
G114812 NA other downstream 73376 13330748 ~ 13332506 (-)
LOC110507534 LOC106606051 other downstream 312117 13086169 ~ 13094428 (-)
G114442 NA other downstream 666725 12735314 ~ 12739157 (-)
G114424 NA other downstream 696567 12707827 ~ 12709315 (-)
G114928 LOC106574568 other upstream 120871 13574535 ~ 13582606 (-)
G115431 LOC106574784 other upstream 508521 13962185 ~ 13976561 (-)
LOC110535427 LOC106585544 other upstream 603878 14046340 ~ 14080800 (-)
LOC118937728 NA coding downstream 177561 13097545 ~ 13127127 (-)
LOC110507522 LOC106606066 coding downstream 220945 13063090 ~ 13083743 (-)
G114763 NA non-coding downstream 98981 13205490 ~ 13205707 (-)
G114762 NA non-coding downstream 100131 13204145 ~ 13204557 (-)
G114402 NA other downstream 691008 12610669 ~ 12613680 (-)
G114390 NA other downstream 719548 12584027 ~ 12585140 (-)

Expression


Co-expression Network