c2h15orf39 (LOC106561847)


Basic Information

Item Value
gene id c2h15orf39
gene name LOC106561847
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 102575299 ~ 102614406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934567.1
TGAATCCTTTCCCTCCGACCCCAGCGGACTTCGAGCAGTTAACAGCACAGATGATGAAAACATATCGGCATACTACAATGTATATACGGCATACAAGGCAATGTAGATCGCGTTCAGGATTCCAATCATTTAACCTGACATTTGAGTGAATGACATCATTTGGTCTGGTAAATCCTCGCCGTGCAATCGGAAGCAGCATGTTTCGAATAGTTTATCTGACTTCTGAGTGTTTCATGGATTCTTTGCGGGAATTTTGTTCAGTAGTCTACTCAGAATAAAGAGATCCTGGTCTATTATCGGACCACCACAGAGTCAACACATGATGAGCAACAGCAGTAAACGAGTCCAGCCAAGCTTCACTGTCGCCCCGGTGGTCCAGAGCAAGATGCCCCGGCTGGAAGGGTCCATCATTGGTAGTGTGGCGTCTACAGAGGCAGGAGGGCTCTCTAAACCAGCCAGCCTGGCTCACTACCCCTCTGCCCCCCACCACACACCCCAGACCCAGGCTCTGCAGAACAGGGCCTACTTCACCTATGACCTCGGGGGTCACGACCTCTCTGACCCTGACCTCCGACCTTCCTGGAGCCCCTCTGAGGGGTTGCTGCTGAACAGGAGGAATGTGGGGGTTTCCCCTCAGAGCGTGGAGGAGGGGTCGTTACGAAACCACATAGTTTACAGCAGGGCAGAGACTTTTTCTACTGAGAGTAGTAGTGTTAGTGGTAGTAACTCTGTCTCTGCTACTGCTCAGGACACTCCAGCTAAGCAGGGTTTTACCTACTACACCAGGAGCCCAGGTGGGCTGAGGAGTCCCACCAGCGGGCCTGGGACCATCGCTATGCCCATTGCTGTGAGGAAACAGCCCCCTGTTGGAGGAGTTAGCCTCTCCCCTCAGTCTGAgaactctgtctgtctgagtctggCTGTTCCCAAACCGCTCTACGGACACCCCTCCCCCTGCTGTTCTGAGCTGGGCTGTACTGTAGGACAGAGGCACAGTCTGGAGCAGAGGGGGGGAGTACACAGGATCCATCCCCATCTTAATTTGTATGAGGGGTGGATGTATAGTCCTAGCTCCCACCACCACCCCAGGGCTCTGCAGCCGGAGCACGGTGTTGAGACAGAGAGACTATCAGACAGACTGCCTCTAAAAGATGGCAAGGACCACCAACACCACCCCAATGGAATCCCCAACAGAGCAGTATCGGCACAAAGATTTCCTGTCTTCATGGAACCAACCTACAGCATTGGTTACCCATGTGCCCCGGCCCGTGCCGTACGAAGCCCCTCCTCATTTACATGTGACCCCCTCTCTTCACAGTTAGGCGCCTCCCCCTATGGGGCTGATCAATGCCAACGTTTACAAATCCCTTCTAAACGTCCAACCTATCACAGCTTGGTCTCTTCCCACCCCTCCTGCtcttcctctcacccctcctgctcttcctctcacccctcctgctcttcctctcacccctcctgctcttcctctcacccctcctgctcttcctctcacccctcctcccatccctctcacccctcctaccatccctcccatccctctcatccctcctgccatccctcccatccctctcctccctctcaccccttccaCCCTACAACATACAAACCCATGACCCCTTTGCACCATGGCGTTCCGGTAACATCACAAGTTTATCAGGGCCGCTCTTCTCCCAATGTGGCCAAATACAGCCAGCTCCCAGTCACACAGCCCATTTTTTACTACCATCCTCAGGCAaatgtggagggagagagtgagagttgtGGAGCAGGTTTTAAAGATGCAGGAGGAGGAatgcacagagacagagactgggaggATGTTATGGTCTCTAAAGGTTCTAAAAGACCCCTACCTCCCAGTCCCACCCAGACAGGACCCCACCTAGCTTCTCATCTTCCCAGCACAGCAACCCCCACCCACTACCATGTCACCCAGTCTATGTACAGTACTGATGTCCCCATGTCTAGCCACATGGCTCCTAGTAGCCACCCATACCTCAGGAGTTTTGACCAGCCCTCCTATCATCAATTGTACAGGATGCCCCTGAATGCAGCAGGTCAGATGAGAGCCCCTGCTATAGCCCCAGAGAGACCCTgtgcctctccatctccccccagCAGCCTACAGCGGACTGAGAGACCCCTGGACTACTCCCTGCCTCAGTACAGATCTCCAGTCACCTCTCCTCAGGTCTCCTCCCCCAGGAGACACCACCTATCTCGGGGACACTCTGACTCCACACTCCCTGGAGCCCCACTGACTGTCTCCACCACACTGTCACGGGCTGACTATGGCCATCACAACCACCCagccaaccaccaccaccaccacagcaacaACCATGCTACTACAGCCATGTGTACAACTGCTGTAAACTATGGCAACCACCACACAACTACAGCCAACCAGAACAACCACCAACACACAACTACACGTAACCATCACAACGCCACGTGTCAGGGAATGACTGGTTCTACTGTAGTGAGGCTTCGAGACAGTCCTGTCCCTCAGTCTAATGTGCATGGAGACATGATCACTACTGGTACAGAAATGCTGAAGAGATGGGTCTCGGACTCAGACCGACCCATCAACATAGACTCTCCctcaccaaaacacacacaggacaatggggatgacgtcattgatGTGGAACTATATCAGAAACGACAGAAGATGAAGACGAACGGAGAGGGAGATATAGCAGAGGGAGATATAGCAGAGGGAGATATAGCAGAGGGAGATATAGCAGAGGGAGATATAGCAGAGGGAGAtatagcagagggagggagagcagaggtgaaCGGAGAGGGAGGCGGACTCGAtagctgtctgtctccctctcctcccatgcCAGTCATCAACAATGTTTTCAGCCTGGCTCCATACAAGGCTTACCTAGAGGCTGCTGGCATGCTGTCTCTACCTGTTAGAGGATCTCAGAGAACTGACCGCCATCCTTCTGGACACTGTGTGCTCAAACCTGAGACCCAATCAGACCCTCACAGACGTCATcaacacagacaggaaacaggcCCTACATCTGACCCACACAGGCCTGAGAGAGACCCTGAAcgagaggaagggaagcctgtatcAATCAATCACAGGATTGGTAACCATGTAGTCCGACCAGCCTCAGAACAGCAGAGGCCTGTAGTCCAGCAGAGGATTCTGGGTATTGTAGTCAGATCAGACACTACACAGAAGACACCCGTAGTGCCTGTTTTCAGTGAATCACCGCAGgaaccagagagggaggtggaagTGAAGACCGCCGATTTGCAGATTAAAGTGGttaaggaagaggaggaggaaccaCAGcaagaaccagagagggaggtggaagTGAAGACTGATGACGACATGCAGACTAAAGTGGTTATtaaggaagaggaagagatggaggtggcagcagcaacaacagagCCGGGTGTGTTTGTACATGATCTCACCGTGGGTGTTATTAAGAAATGTGAATCTGATCAACTGGACAGTAAATTGTCAATAGCGTCAGATAAATATATTTCTATTATGTCGGCTACAGATAGACGTGTGATGGAGGGATCTTTTACTTACAACGAGCACCACCATCAGTCCCAAACTCAGCACCACCATCAGTCCCAAACTCAGCACCACCATCAGTCCCAAACTCAGCACCACCAGCCCCGGTCCAACCACCATCCATCCCAGCCCCTGTCCAACCACCATCCATCCCAGCCCCTGTCCAACCACCATCCATCCCAGTCCAACCACCATCCATCCCATCCCCTGTCCAACCACCATCCATCCCAGCCCCAGTCCAACCACCATCCATCCCAGCCCCTGTCCAACCACCATCCATCCCAGTCCAACCACCATCCATCCCAGCCCCTGTCCAACCACTATCCACCCAATCCGCCGCAACCCCACCTACGTCCCAAATCAACAACTCCACCCCAACCCCTCTCAATAAGGCATAGGATAGTTGGCGCGTTCACCCATAACGTGCACCACCCTCCCCAGGCCCATCAGAAGCCCTATGACCAGACTGCTACACCACACCCTAAATCATCCAGCTCTCCCCAATCCACCAACCCAGCCACCACCAAACTGAACCTTCAAAACATCCCTCCTCAATGTCTCAAACTATCCACTTATAAGATCGTCCTGCCAGATAACATGCTCCGGGCTGTTGCTCCCCCTCCCTGCTCTACAGAGGTCCCACAGTCACCCACTGACCCTACAGCTGTAGCCAAATCCAGCCGCAGCCCTCATGCCCTTTCAGACAGCAACAACAGCTCCCGACCAGCCAGACAGCACTTCCTAGAGCTGCACCTCTTACTTTGTAACCTGGTTTCCAGCTGTGTGTCCCACACCCCACCCACAGAGCTCCAAACCTGGCTGTCCCAGCTGGACATCTCCCTTACCTCCACCGCCATTTCCCCACCCAAGGCCCAGAAGGTGACCTCTCTGCTGGGTTCTGAGGCCAGGGAGGTGTGGCTGAGGGGACCAGAGACCCAGGCTGCCCTCCAGAATGTGCTCCAGAGACTGGGGCAGTATGTAGCCCAGAAGCAGTGTCCCTTCCCCCATGTGATGAGGGCAGGCGCGGTGTTTGTTCCCATGCTGGTGGTCAAGGAGCTGCTCTTCCCTCAGGTCCAGGGGGTCTACATCGACCAGGTTCTCCAGGAGCACAAGGTGGAGTTGAGACCTACCACCCTGTCTGAGGAGAGACACCTGGTGACGCTGCAGAAACGACCGTGTTCCTCCAAGCTCCGCAGACTCCTGTCACTCAAACACCTGCCTAACATCTACCCTGACGTTCTCAACCTCTACTATCACAGCTGTGTCTGCAAGAGCCTGGGTGTAGAGCCATGTGACACGGCCAGGACACCAGAAGGAATGCTGTGTTCAGAGGATCGTTGGAATAGGTCTGCCAGTGGGCTATGTTCACTGGCCACCAACCGctgtgacattggaacacagaCCACCACCTCACCACAACACCTGGAGGAATGTATCAGTCTGTCTCCATCTCAGACCCCGAGCTGCAGAGCCACAGCTAGCCTCTCCTCTCATAGACCGAGAGAGGACCCGAAGAGAggatcatcatcatcctcacacTTTAAGATGCACaagaggaaagaggggaaaggcaagaagaagaagaagaagagcttCCCCAAACCTCTGTTTGTAGGGACGAGGGTTCGCACGGTGTTGGAGGGTGGTGGGAACACAGAGCAGGCTGGAGACTGGAGCATTCTAAAGAACACTGTTaatcaggaggaggaggaaaggaatggCCGGCTGGTGTGGAGCAGTGACAATGCAGGCAGTGACTCTGacaggagggatggaaagagtgatggagagaaaaggggaaagggggatggaGAGCGGAATGGAGGCAATaagctggaggaagaggaggagccacCAGCCACACCcctgctggaggaggaggaggaggagtctaacTCCTGGACGTGCCCTTTGACCTCAGACGAGCTGTCTTCGTCTCCTAGCAACAGGGATCGAGCCTCCACACTATTGGCCGTGCCGTCCTACAAGACCCCATCCTCAGGTTCAGCCTGGTCCCAGGGCCTCAGGACGAAGAGCCAGTCAGGGATGATCCTCAAGTTGAGGAAGGTGTTGTTTCCTGAGGGACGTAAAGGACAACAGACGCGATACCaggctgtctctgtctcagacacTGAACTGCGCCGACAcagtcagcctcctctctcagacagccagcctctcctctcagagacagagGATGGGGAGTCCAGGAGAaagagggacagggagggggacagaggagaggccaGGGAAAGAACCAGGGATGGATGTCTTTccaggaggatgtcctccaaGCTCCCCCAGCGAGGGCTGCATTTCGGGGGCTTCTCTTCTACCCTGCGCCACCTCACCACCTTCTCATCCTTCAGCCGACtgccctcctctctgtcctcctccctgcgCCGCTCCGTCATGAAGATCAAGTACTGCCCCTTCTTGTCTGCCTGCCACAGCTCTGACCACCGTCGGCGCCGCTGGATCCTTCGCTCCGCCGTGCAGCGCGCCCGCTCCGTCATGAAGATCTACTACCCAGACCTGGTGGGGAGACGGATACAACACCTCTACGAGGAGGGGGACGGGACGGAGGTGTGGTACAGGGGTCTGGTGGTGCAGGTACATGAGCCACACCCTAACCCCCTGAAGACTGTGTTCCAGGTGAAATATGACTCTGAACCAGAGTGGCAGTACTACTTGGAGCTGCTCATAGACTATAAGAAGGGTTGGCTAAAAATAGAGGACTGAGACAGGACTGAAGGCTAACTGGGCGTTTTGTCTTGTTTGGTTTTTGAAGAATGGCTGGCTTGAAGAAGAGTGAATCCTGGTGAAACACAatttttcctgtgtgtgtgtgtgttttcactggtttgtgtgttttgactgtgttgtttttCAACAGTTTGATATGTGTATCGGTGCTTTTCTCTGGgccactttgtttttgcatcGCCTGGTGCCCCGGGTGGGTGGAGATTTCACTttaggaccaatggaatggtctacaATATGCAACTTCCACCCCACCCTGTTCACCGGACGACGCAAAACAAACTCGTCCAATGATCCTCAAGTTGGTCTTTGCTAGTTTGTTGTTAAACTGTCAGCTGCCGGCTGCCTCCCAAAGGAATGCTGTTGGACAGGATGGagattattttttacttaagacAGACCGATTGGTTAAACTGTGCTCCTTGCAACATGGAAACATAAATCTACCACCCATTATGTTAAATTGTTTGTATTTATTCATCCTATCAGTTAACTGTAATTGTCTCCGGTTCACAAAATAATATTGTTAGACAAGATTTAGGCAGTTTTAATGAATCTTTCCTCCGGAAAAATGTCTAACAGTCTTAATTTATGTTAAGCTAGTAAGGCCATCACAGAtggcatctcaaatggcaccctattccttatatagtgcactaatttagacccaaacggcaccctattccctatatagtgcactattttagacccaaatggcaccctattccctatatagtgcactattttggacCCAAATGGCCATCCCTAACCCCGTACCTAACACCATCCCTAACCCCGTACCTAACACCATGCCTAACCCCGTACCTAACACCATCCCTAACCCCGTACCTATCCCCCGTACCTAACACCATCCCTAACCCCGTACCTAACACCATCCCTAACCCCGTACCTAACACCATGCCTAACCCCGTACCTAACACCATGCCTAACCCCGTACCTAACACCATCCCTAACCCCGTACCTAACACCATGCCTAACACCATCCCTAACCCCGTACCTAACACCATCCCTAACCCCGTACCTATCCCCCGTACCTAACACCATCCTTAACCCCGTACCTAACACCATCCCTAACCCCGTACCTATCCCCCCTACCTAACACCATCCCTAACCTCGT

Function

NR:

description
uncharacterized protein LOC110501494

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934567.1 True 7487 mRNA 0.53 4 102575299 102614406

Neighbor

gene id symbol gene type direction distance location
hexa hexa coding downstream 14313 102508492 ~ 102560986 (-)
LOC110501505 LOC106561846 coding downstream 131040 102426057 ~ 102444259 (-)
commd4 comd4 coding downstream 282943 102287895 ~ 102292356 (-)
LOC110501416 LOC106561859 coding downstream 575212 101997799 ~ 102000087 (-)
LOC110501407 LOC106561868 coding downstream 658856 101912984 ~ 101916443 (-)
trnaq-cug NA coding upstream 120874 102735280 ~ 102735351 (-)
LOC110501471 rl4a coding upstream 156739 102771145 ~ 102777929 (-)
LOC118944154 NA coding upstream 157792 102772198 ~ 102772265 (-)
LOC118944156 NA coding upstream 158145 102772551 ~ 102772618 (-)
LOC118944153 NA coding upstream 160506 102774912 ~ 102774979 (-)
G213573 NA non-coding downstream 40733 102534226 ~ 102534566 (-)
G213475 NA non-coding downstream 43721 102386129 ~ 102531578 (-)
G213569 NA non-coding downstream 54509 102520299 ~ 102520790 (-)
G213536 NA non-coding downstream 76552 102452206 ~ 102498747 (-)
G213533 NA non-coding downstream 110104 102448933 ~ 102465195 (-)
G213634 LOC106604990 non-coding upstream 56657 102671063 ~ 102671583 (-)
G213635 NA non-coding upstream 57374 102671780 ~ 102672123 (-)
G213636 LOC100380853 non-coding upstream 58151 102672557 ~ 102672850 (-)
G213637 LOC106562530 non-coding upstream 58840 102673246 ~ 102673469 (-)
G214014 NA non-coding upstream 135276 102749682 ~ 102756525 (-)
LOC110517830 LOC105018063 other downstream 828748 101743015 ~ 101746551 (-)
G212836 NA other downstream 855567 101719367 ~ 101719732 (-)
G212829 LOC106613263 other downstream 862452 101712238 ~ 101712847 (-)
LOC110502631 LOC106592148 other downstream 1395538 100976119 ~ 101191014 (-)
G214030 NA other upstream 204962 102819368 ~ 102819829 (-)
G214038 NA other upstream 229615 102844021 ~ 102847527 (-)
G214041 NA other upstream 249001 102863407 ~ 102863771 (-)
G214126 NA other upstream 507243 103121649 ~ 103122969 (-)
G214137 NA other upstream 542104 103156510 ~ 103157854 (-)

Expression


Co-expression Network