G112414 (pgcp)


Basic Information

Item Value
gene id G112414
gene name pgcp
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10037971 ~ 10038897 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU128332
CACAATGGGACATTTCTCGTAGCTTACCTGTTCTGGGTGCTCGCTGCCGATGATCTCAGCCACAGTGTTGAAGGAGTCAGCATCAGGGAAGGTCTGGGCGTTCATGGTGAGTCGGACCACAATCCTCTGGCCTCGCTTAGCCATCCTGGCCATCATCATGGCGTCTTCCactgtgatacaggcggtagggATCTTCTGCACTCCCTCCTGGTAGTCCTGCCAGCCTGTGTGAGGACTGTTGATGGAGAAGGGTGTGATGGACCGGATGAGAGTAGCCACAGCTCCTACTTCAGCTGCCTTGGATGCCCCAAACTCCCTGTACTGCACAGTCTCCCCATAGCTGACAAAGGGCTGGTTATACACCACAATCTTCCCAATGGCTTCCTTCTGCCTTTTTTTCAGCTCCTCAAAAGACTCCACCACCAGCACCTCTGCTTCAATGCCTGAACCGAGAGGAGACCGAAAGCCACAAAAAAAGTGACATGCTTGGAGCAACGGTCTACGGtactgcatttcagtgcttgaggcgtcactacagacaccctggttcgaatccaggctgtatcacaaccggccatgattgggagtcccatagggcagcgcacaattgggccagcg

Function

NR:

description
carboxypeptidase Q-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128332 True 618 lncRNA 0.43 2 10037971 10038897

Neighbor

gene id symbol gene type direction distance location
LOC110493960 LOC106606059 coding downstream 31161 10000730 ~ 10007883 (-)
LOC110507310 LOC106595913 coding downstream 124640 9910470 ~ 9913331 (-)
LOC118937662 NA coding downstream 191114 9846044 ~ 9847233 (-)
LOC110512181 LOC106605978 coding downstream 634478 9392946 ~ 9403493 (-)
LOC110520732 LOC106605979 coding downstream 688666 9330271 ~ 9349305 (-)
trnaa-ugc-2 NA coding upstream 60005 10098902 ~ 10098977 (-)
LOC110507454 LOC106584706 coding upstream 223423 10262320 ~ 10267649 (-)
LOC110507471 LOC106584706 coding upstream 261808 10300705 ~ 10309293 (-)
LOC118944052 NA coding upstream 277881 10316778 ~ 10354245 (-)
LOC110520767 ulk4 coding upstream 363022 10400640 ~ 10611447 (-)
G112405 NA non-coding downstream 2113 10034162 ~ 10035858 (-)
G112404 NA non-coding downstream 3893 10033338 ~ 10034078 (-)
G112409 NA non-coding downstream 14386 10023031 ~ 10023585 (-)
G112408 NA non-coding downstream 15287 10022256 ~ 10022684 (-)
G112407 NA non-coding downstream 15780 10021593 ~ 10022191 (-)
G112429 NA non-coding upstream 18720 10057617 ~ 10057973 (-)
G112415 NA non-coding upstream 23289 10062186 ~ 10062558 (-)
G112413 LOC106606032 non-coding upstream 30252 10069149 ~ 10074892 (-)
G112437 NA non-coding upstream 38817 10077714 ~ 10078200 (-)
G112440 NA non-coding upstream 44211 10083108 ~ 10084747 (-)
G112076 LOC105018850 other downstream 257516 9779011 ~ 9780455 (-)
G112066 NA other downstream 276306 9761300 ~ 9761665 (-)
G111955 NA other downstream 402841 9634537 ~ 9635130 (-)
G111855 NA other downstream 598033 9439362 ~ 9439938 (-)
G112491 LOC106584755 other upstream 179255 10184147 ~ 10296999 (-)
G112567 NA other upstream 307574 10346471 ~ 10346935 (-)
G112928 NA other upstream 531545 10570442 ~ 10570808 (-)
G112965 NA other upstream 609368 10648265 ~ 10718658 (-)
eif3h LOC100196680 other upstream 697832 10736729 ~ 10808244 (-)

Expression


Co-expression Network