G133523


Basic Information

Item Value
gene id G133523
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33253087 ~ 33253306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU153769
AGACACCACATTATATGTCaacattatttatacttttaattaatacatttcaaAGTATTTCCAATTGGAAAGCAATTTACCCCAACCCATGCTACCTATACACCATCAGAATGTATTGATTGAGTTGTGAACTAGCAGTTCAATAAACTCTGACAAACTCTAATCTCATAACTTATGATGGATTTCAGCCAATCAACTTTGTCATTTTTGTTGCAACAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153769 True 220 lncRNA 0.56 1 33253087 33253306

Neighbor

gene id symbol gene type direction distance location
LOC110487588 NA coding upstream 93025 33130317 ~ 33160062 (+)
tmem176l.1 m4a8a coding upstream 203799 33045832 ~ 33049288 (+)
LOC110487536 NA coding upstream 207366 33028873 ~ 33045721 (+)
LOC110487571 m4a8a coding upstream 219234 33030310 ~ 33033853 (+)
LOC110487479 LOC106605309 coding upstream 251081 32988834 ~ 33002008 (+)
LOC110487649 LOC106581815 coding downstream 62984 33316290 ~ 33321834 (+)
LOC110487688 LOC106605287 coding downstream 153503 33406809 ~ 33408519 (+)
ntrk1 LOC106605284 coding downstream 181392 33434698 ~ 33460997 (+)
LOC118939517 NA coding downstream 278284 33531590 ~ 33540695 (+)
LOC110487797 LOC106605278 coding downstream 414837 33668143 ~ 33694941 (+)
G133520 NA non-coding upstream 7807 33244997 ~ 33245280 (+)
G133439 NA non-coding upstream 79709 33144374 ~ 33173378 (+)
G133432 LOC106605295 non-coding upstream 117461 33102930 ~ 33135626 (+)
G133417 NA non-coding upstream 169512 33083348 ~ 33083575 (+)
G133525 NA non-coding downstream 3186 33256492 ~ 33260732 (+)
G133527 NA non-coding downstream 10307 33263613 ~ 33264167 (+)
G133542 NA non-coding downstream 39234 33292540 ~ 33294126 (+)
G133563 NA non-coding downstream 69837 33323143 ~ 33323421 (+)
G133564 NA non-coding downstream 71373 33324679 ~ 33324919 (+)
G133473 LOC106605294 other upstream 83709 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1365515 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1886765 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 1960053 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 2503133 30748055 ~ 30749954 (+)
G133663 LOC106605282 other downstream 243148 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 560727 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 709111 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1434649 34687955 ~ 34692286 (+)
G135916 NA other downstream 1718334 34971640 ~ 34971931 (+)

Expression


Co-expression Network