G146341


Basic Information

Item Value
gene id G146341
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43630689 ~ 43635757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU167946
TCTTTTTTGGGTTCTTCTAAGTGTTCTACATGTCTTTCTTTTCTGGCATCTTCTGTATGTTTTCCATTTTTGGATTGTTCTGCATGCCGTTTGTTTTTGAATGCCTCTGTATATCGCTCCTTTTTAAGGTCAACAGCTCTCTCGTCTTTTTTGTGTTCAACATTGTACTTCTCTTTTTGCCGTTTGTCAGAGTATTCTTCCTTTTCAGATTCAGGTTCTGAATCAGAAACATCCAGCCTCTTGTGACTATAGCAAAAAAACAGACCACACCAGATACCGTATCTTCCCCTTTTCTATGTTTACATTTTTGCCTTCACACGCAGGCAATggtttgagtgagtgtgtgtgtatgcacctaCCTGGTGTCTTTCTCTAAGGGGGACCTGACTGGGGACCCTGTGGATTTGTTGGAGTCAACCCCATTCTTCATCTTATTGGGCCTCTCAGTACTCTGAGTACGTGCAGCATCCAGCAGTCTCTTCCAGTCCTTGATGAGGATCTTGGCCAGGGAAACTACCTCATCGTCTGTGCAGTGCTTCCTGATTCCATTCACAGACATGCCGATTCTCGTTTCCTGCAGAAGTTTCAGTGTCATGTTGAAGCTCTTCAGTTCATTCAGCAGGTCCAGGGCACCCTCCGTGTTATTTCTAGACACCATCTTGTCCAGCTTTTTTGCAATCCGAATTAACTCCTCTTCTCGCGTCATAGTTTATGCATGGATTAAACGTACAATAATATATAGTATGTAAAATGCTGTATAATAAAAAATACGAAATGTAAATGTTCATCCTACATAGATATAACTTTACGTTATGGCGCGATCCATGCCATTCGGCGAAGGGGCGTGTCCTCAAG

Function

NR:

description
transcription elongation factor A protein 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167946 True 855 lncRNA 0.43 4 43630689 43635757

Neighbor

gene id symbol gene type direction distance location
LOC110490218 NA coding downstream 22469 43604209 ~ 43608220 (-)
LOC110490183 LOC106605015 coding downstream 238529 43372725 ~ 43392160 (-)
LOC110490160 LOC106605017 coding downstream 366444 43261166 ~ 43264245 (-)
rrp15 LOC106605018 coding downstream 393871 43227942 ~ 43236818 (-)
LOC110490140 LOC106605021 coding downstream 405484 43197588 ~ 43225313 (-)
LOC110490284 rcc1 coding upstream 42398 43678155 ~ 43685499 (-)
LOC110490292 LOC106605010 coding upstream 63202 43698959 ~ 43760350 (-)
LOC110490298 LOC106605170 coding upstream 140769 43776063 ~ 43783884 (-)
LOC110490306 LOC106584341 coding upstream 173911 43809668 ~ 43877802 (-)
LOC118940358 LOC106584332 coding upstream 287203 43922960 ~ 43923737 (-)
G146340 NA non-coding downstream 865 43627399 ~ 43629824 (-)
G146292 NA non-coding downstream 69957 43558429 ~ 43560732 (-)
G145894 NA non-coding downstream 158699 43442528 ~ 43471990 (-)
G145893 NA non-coding downstream 188180 43441777 ~ 43442509 (-)
G145888 NA non-coding downstream 191284 43439189 ~ 43439405 (-)
G146305 NA non-coding upstream 90580 43726337 ~ 43726766 (-)
G146301 NA non-coding upstream 91276 43727033 ~ 43727463 (-)
G146381 NA non-coding upstream 94851 43730608 ~ 43731642 (-)
G146302 NA non-coding upstream 98881 43734638 ~ 43734989 (-)
G146299 NA non-coding upstream 99817 43735574 ~ 43735924 (-)
G145767 NA other downstream 358173 43270717 ~ 43272516 (-)
G145010 NA other downstream 923410 42706818 ~ 42707279 (-)
LOC110489860 LOC106605053 other downstream 1900267 41714269 ~ 41730507 (-)
G142918 NA other downstream 2766968 40863214 ~ 40863721 (-)
LOC110490352 NA other upstream 799033 44434790 ~ 44464449 (-)
LOC110490449 scmh1 other upstream 936191 44571948 ~ 44606865 (-)
G147800 NA other upstream 1227328 44863085 ~ 44863559 (-)
LOC110490531 LOC106560723 other upstream 1498811 45134476 ~ 45168260 (-)

Expression


Co-expression Network