G213266


Basic Information

Item Value
gene id G213266
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 102132896 ~ 102147642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU242222
TGGAAACTAAGCAAGACAACAGATTAATAAAGTGGAGTGACGATGTTAAAAGGATATCAAcaagattcctttttctatggcttcaggcttttattttgaaaaatgagcgtgaaggatcacattgcgtaagtggagaggtgggggctCTCAAAGTGAGTTGGTGCGCAATTGAGTAAAcaggccattgttcctcccgctgttatggaaaaatctacacactcggttgatatattatcgaatatatattttaaaaactacctgaggagtgattataaaaaacgtttgacatgtttctgtggacattatgaagactatttggaatttccgtctgcgttgtcgtgaccgctctttcctgtggatttctgaacataacgcaacaaacaaacgtcggtattttgggtataaaaataatctttatggaacaaaaggaacatttgctgtgtaactgggagtctcgtgagtgaaaaccgaagatcatcaaagatcatcaaagATCTCCATCATTCTTCTTGGTGCAGCGAAAGCTTCTGAACAGGAGGTAGAGGTGACTGAACACGATGAGGGGCGGAGGGAGGATTGGACGGTCATGGAAGATCATAATCAGCTGATATCTCTGGAACTTCCAGATCTGGTTGGAGATGGCCTTCACCTCCATAAAAGTGTTGCTGTGGGAGAGGAGGTACAGGGTCCCAGGTACTTGTTGACCCCGAAGATGTCGAGCACCCTGATGTACCAGAAGATGATGTCTATGCAGTAGATGACACGTCCGATGCCCAGGAGGGGTTCGTTCTGCAGCCTCAGCAGAAGGCCAACCAGGAAGGTGGAGATGGCTGCCAGGTCAGTGATGTTCCAGACCTCTTGCAGCCATACGTTGATCTTCTGCTTCAGCTTCCCAGGCTCTGACATTAGGATCTATGGGTCAAGGTCAAAGTTAGTAACCCAGGCTCAGACATCAGGATCTAAGGGTCAAATTCAAAGTAAGGCTCTGACATCAGGATCTATGGGTCAAGGTCAAAGTTAGTAATCCCAGCTCTGACATCAGGATCTATGGGTTAAGGTCGAAGTTAGTAAGTAAGCCTTGTCAGAGCCAGAACCGGGCATGGGGTAGGATGTCCTATTTCTGTAGCGAAGCATCTTGATGTACACTACACCCTGTCTGACTTCAGGGTCGATGAAGGAAGTACAAAGCATCAATCAATGCTCACATACAGTACAGCTGCATCTGAAATAGCCTATTACCTAT
>TU242223
TGGAAACTAAGCAAGACAACAGATTAATAAAGTGGAGTGACGATGTTAAAAGGATATCAAcaagattcctttttctatggcttcaggcttttattttgaaaaatgagcgtgaaggatcacattgcgtaagtggagaggtgggggctCTCAAAGTGAGTTGGTGCGCAATTGAGTAAAcaggccattgttcctcccgctgttatggaaaaatctacacactcggttgatatattatcgaatatatattttaaaaactacctgaggagtgattataaaaaacgtttgacatgtttctgtggacattatgaagactatttggaatttccgtctgcgttgtcgtgaccgctctttcctgtggatttctgaacataacgcaacaaacaaacgtcggtattttgggtataaaaataatctttatggaacaaaaggaacatttgctgtgtaactgggagtctcgtgagtgaaaaccgaagatcatcaaagatcatcaaagATCTCCATCATTCTTCTTGGTGCAGCGAAAGCTTCTGAACAGGAGGTAGAGGTGACTGAACACGATGAGGGGCGGAGGGAGGATTGGACGGTCATGGAAGATCATAATCAGCTGATATCTCTGGAACTTCCAGATCTGGTTGGAGATGGCCTTCACCTCCATAAAAGTGTTGCTGTGGGAGAGGAGGTACAGGTCAGTAGAGTTATAGCTAACCCTGACTCTAACTAatcctaaccctggccctaactAACACTAACCTTGGcgctaactaaccctgaccctaacttaacttaaccctgaccctaactaaccctgactaACACTAACTCTGACCCTAACTCTACCTAACCTTGCAAGATGGGGGGGAATAAGACAGATGTCTTATTTTAGATACTATTTGAAGAGGTTTTTGACGATGGCCAGAGACGAGCGACCCACGTGACTAAACAGTGAGCTGTGACTCACTGGTCTGATAACTCAGGCTTGTAAAAGTGGAAGTTAGCTCAAATTTTTTGCAACTTTTTGTCTGGTTCTCATATGCACGCTATTTGCATGCTAGGCCCCCACTAGAGAGGTAAACAAGCCAAGCTAAAGATAGGCTAGCTATTCTAGCGAACTAAAACTGTGGGAAGAAAAACTCTGGACCTTTTCTGAAACGGTGATCGAGACGACACTGCCACATTGTAATGACCAATTTCGGGATTTAATTGAAATAGGAGCAACTTGAAGCATTTCAAGCCTTTGTGTGAGGGGAGGATGTATAGCTAGCTAATTATAGTCTTCAAGAAGCTAGGAAAACAGTCACAGTGGTGTCCCCGCTAAAGGCTGCAAAGGACAGAGGACCACATCCGTGAGGCAATAGCTCTGGGTCTCAGAGCGGTGGTTGTGGAGGAAGACAAAAACACTATATGGGAGGGTTCATGCAACTTTGTCTTCAGAAGTCCAGAGAGCTGGTTGGGGaagacattttacatttacattttaggcatttagcagatgctcttatccagagagacttagtgCATTTATCTTGATAGGATCGGACCCGTTTTTAGAATGttctcctaaaatgacatacaaatgcatattattgataccatggCTTTCCATACCAACCATACCATGGTTTtcacac

Function

NR:

description
LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily M member 1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU242222 False 1243 lncRNA 0.45 3 102132896 102147642
TU242223 True 1628 lncRNA 0.42 2 102144555 102147642

Neighbor

gene id symbol gene type direction distance location
LOC110501416 LOC106561859 coding downstream 132809 101997799 ~ 102000087 (-)
LOC110501407 LOC106561868 coding downstream 216453 101912984 ~ 101916443 (-)
LOC110517830 LOC105018063 coding downstream 386349 101743015 ~ 101746551 (-)
LOC118944015 NA coding downstream 426249 101706005 ~ 101706647 (-)
LOC118944014 NA coding downstream 428936 101701386 ~ 101703960 (-)
commd4 comd4 coding upstream 140253 102287895 ~ 102292356 (-)
LOC110501505 LOC106561846 coding upstream 278415 102426057 ~ 102444259 (-)
hexa hexa coding upstream 360850 102508492 ~ 102560986 (-)
c2h15orf39 LOC106561847 coding upstream 427657 102575299 ~ 102614406 (-)
trnaq-cug NA coding upstream 587638 102735280 ~ 102735351 (-)
G213389 NA non-coding downstream 14763 102117568 ~ 102118133 (-)
G213291 NA non-coding downstream 183216 101947531 ~ 101949680 (-)
G213285 NA non-coding downstream 203694 101921527 ~ 101929202 (-)
G213260 NA non-coding downstream 240222 101892275 ~ 101892674 (-)
G212908 NA non-coding downstream 254784 101860639 ~ 101878112 (-)
G213403 NA non-coding upstream 18071 102165713 ~ 102166763 (-)
G213408 NA non-coding upstream 19978 102167620 ~ 102168049 (-)
G213409 NA non-coding upstream 20543 102168185 ~ 102168594 (-)
G213410 NA non-coding upstream 20979 102168621 ~ 102168920 (-)
G213411 NA non-coding upstream 22543 102170185 ~ 102170944 (-)
G212836 NA other downstream 413164 101719367 ~ 101719732 (-)
G212829 LOC106613263 other downstream 420049 101712238 ~ 101712847 (-)
LOC110502631 LOC106592148 other downstream 953135 100976119 ~ 101191014 (-)
pkp3a pkp3 other downstream 1418643 100662972 ~ 100716213 (-)
G213475 NA other upstream 238487 102386129 ~ 102531578 (-)
G214030 NA other upstream 671726 102819368 ~ 102819829 (-)
G214038 NA other upstream 696379 102844021 ~ 102847527 (-)
G214041 NA other upstream 715765 102863407 ~ 102863771 (-)
G214126 NA other upstream 974007 103121649 ~ 103122969 (-)

Expression


Co-expression Network