XLOC_002166 (fhl1b)


Basic Information

Item Value
gene id XLOC_002166
gene name fhl1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26597990 ~ 26621189 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004175
TTAGCATTGACTAATTCATATTCATGAGCTGCTACTTCTCGACAACATCAACGCAAAACCGAACCAAGTGCAAAACACTTTGCTGTGGCGCCAGTCGGCTGGACAGACACAAGAGGAGCTTTTCGCGGGTTTATTGGGTGACTGACTATGGCAAGCCGGTCCAACTGTTTTTACTGTCGTGAGGACCTCAGTGGAAAGAAGTTCGTGAGGAAAGACGAGAAACAAGTCTGTGTGCGATGCTTCGACAAGTTCTGCGCAAACACCTGCACAGAGTGTCGACGCACGATCAGCACGGACTCCAAGGAGCTTCACCATAAGGGGAAATACTGGCACTCTGATTGTTTCCGATGTGCCAAGTGCTATAAGAATCTGGCCAAGGAGTCTTTCACCTCCAAAGATGACAGGATCCTGTGTGGGACGTGTAGCTCACGTGAGGACGCTCCTCGCTGCCATGGCTGCTACAAGCCCATACTGCCAGGCACTGAGAATGTGGAATACAAAGGCAACTCATGGCACGATGAGTGTTTCAAATGCTATCAGTGTCAAAAGCCAATCGGCAACAAGAGTTTCATAACAAAGAACAACAATGTCTACTGCAGCCCTTGCCATGAGATGAAATTTGCCAAACAGTGTGCTTGCTGTAAGAAGCCCATTACCACAGGAGGTGTGAATTACCAGGACCAGCCGTGGCATTCAGAGTGCTTTGTGTGCTCCTCCTGCCGAAAGCCTCTGGCGGGCACCCGCTTTACCTCCCACGAGGAGAAAGTCTACTGTGTGGACTGCTATAAAAGCACTGTGGCCAAAAAATGCAGCGGTTGCCAGAACCCCATTACAGGATTTGGCAAGGCTACGAATGTAGTGAACTACGAGGGTGGCTCTTGGCATGATTACTGCTTCAACTGTAAGAAATGCTCCCTCAACCTGGCCGACAAGCGCTTTGTTGCTCACAGCGGACACATTTACTGCTCCGACTGCTCCAAGAAACTGTAAACACTCAGAAGAGGGAGATTACTTTAGAAAAATATCAGCCTTCTTTTGAATTTATACAAAAATCCCACATAAAAATGTTGAAGTATTGACAAAGGCTTCTGTTGTGTTGATTCTGGCAGCTTTTTGAGGGGAGTTTGATGTTTCCTGTGAGGAATGTTTCGTTTACCTTGAGGCTTTGATAGGAAAACTTATCCTCTCTTTTTCCAATGACCCATTTGTCTCAGGAAAGATAGTAGGGCGGGAAGAAAGACAGatagtaaaataagtgtttttgagAATGTGAAGCCTGTTTTTGAGATGTATTGATCTTTCATTTCACATTTAATGATGCCAAATAAAGCTTTGGGTTGGTAACTTTTAGCCTATAATCATGACCAATGAATATTTCAGTGATTCAGCAGATTCCTTTCAAGATACTTTCATATAAAATACCATATTGGAAAATTAAAATGTGTAGGTTTTGTCTGTCTCCTTACTTATACGTTATCGTTAATGCAATTAACATGAATAATCCATTTTCATTTCTTTGtataaactgaaaaataaagttAAGTATCTGAGAAATCTGATAAGGTTGTTTGTATTTGTCTTTTTTCGTACAACAGCGACATCTAGTGGGACAAATAACAGAATCAGTTGAATCAATGTTTGACCATTTCACAACGTGAACGTCGTAGAAGAGCTCAGAAACTGCTTtattgctgtctgtgttgttattttaactgtacatttgtattttaatacataGTACAGAAAAACGTCGTATACTGCTGTGTTTTTAATGAAGACACACATATGCTAACTCTAGCTAAACG
>TCONS_00004176
CTTTTCGCGGGTTTATTGGGTGACTGACTATGGCAAGCCGGTCCAACTGTTTTTACTGTCGTGAGGACCTCAGTGGAAAGAAGTTCGTGAGGAAAGACGAGAAACAAGTCTGTGTGCGATGCTTCGACAAGTTCTGCGCAAACACCTGCACAGAGTGTCGACGCACGATCAGCACGGACTCCAAGGAGCTTCACCATAAGGGGAAATACTGGCACTCTGATTGTTTCCGATGTGCCAAGTGCTATAAGAATCTGGCCAAGGAGTCTTTCACCTCCAAAGATGACAGGATCCTGTGTGGGACGTGTAGCTCACGTGAGGACGCTCCTCGCTGCCATGGCTGCTACAAGCCCATACTGCCAGGCACTGAGAATGTGGAATACAAAGGCAACTCATGGCACGATGAGTGTTTCAAATGCTATCAGTGTCAAAAGCCAATCGGCAACAAGAGTTTCATAACAAAGAACAACAATGTCTACTGCAGCCCTTGCCATGAGATGAAATTTGCCAAACAGTGTGCTTGCTGTAAGAAGGTAAATAaaaattcggtaacactttagcttAGGTCAcgattcacagtattaacaaaccattaactaacactactagcttaatcaactactaattagctgtttattcaTAGTTAGTCAGGTAGAAGTtgagtttaggttttgggtaggattatggATGCTgagtaagatcatactttataagcaTACTTtataatgaacagttaatatcttaataatagacaggtaataagccagtagttattaGCATAAATTGTGaccaaaactaaagtgttaccaaattctGTTAAtctatttaatatgtttttattattttaatttataattgctTTTACTGTTCCAgtttttttatatgaaataaagATTTATAAGATTAATGACTTTCACAAGTTGTCCCAGC
>TCONS_00004177
CTTTTCGCGGGTTTATTGGGTGACTGACTATGGCAAGCCGGTCCAACTGTTTTTACTGTCGTGAGGACCTCAGTGGAAAGAAGTTCGTGAGGAAAGACGAGAAACAAGTCTGTGTGCGATGCTTCGACAAGTTCTGCGCAAACACCTGCACAGAGTGTCGACGCACGATCAGCACGGACTCCAAGGAGCTTCACCATAAGGGGAAATACTGGCACTCTGATTGTTTCCGATGTGCCAAGTGCTATAAGAATCTGGCCAAGGAGTCTTTCACCTCCAAAGATGACAGGATCCTGTGTGGGACGTGTAGCTCACGTGAGGACGCTCCTCGCTGCCATGGCTGCTACAAGCCCATACTGCCAGGCACTGAGAATGTGGAATACAAAGGCAACTCATGGCACGATGAGTGTTTCAAATGCTATCAGTGTCAAAAGCCAATCGGCAACAAGAGTTTCATAACAAAGAACAACAATGTCTACTGCAGCCCTTGCCATGAGATGAAATTTGCCAAACAGTGTGCTTGCTGTAAGAAGCCCATTACCACAGGAGGTGTGAATTACCAGGACCAGCCGTGGCATTCAGAGTGCTTTGTGTGCTCCTCCTGCCGAAAGCCTCTGGCGGGCACCCGCTTTACCTCCCACGAGGAGAAAGTCTACTGTGTGGACTGCTATAAAAGCACTGTGGCCAAAAAATGCAGCGGTTGCCAGAACCCCATTACAGGATTTGGCAAGGCTACGAATGTAGTGAACTACGAGGGTGGCTCTTGGCATGATTACTGCTTCAACTGTAAGAAATGCTCCCTCAACCTGGCCGACAAGCGCTTTGTTGCTCACAGCGGACACATTTACTGCTCCGACTGCTCCAAGAAACTGTAAACACTCAGAAGAGGGAGATTACTTTAGAAAAATATCAGCCTTCTTTTGAATTTATACAAAAATCCCACATAAAAATGTTGAAGTATTGACAAAGGCTTCTGTTGTGTTGATTCTGGCAGCTTTTTGAGGGGAGTTTGATGTTTCCTGTGAGGAATGTTTCGTTTACCTTGAGGCTTTGATAGGAAAACTTATCCTCTCTTTTTCCAATGACCCATTTGTCTCAGGAAAGATAGTAGGGCGGGAAGAAAGACAGatagtaaaataagtgtttttgagAATGTGAAGCCTGTTTTTGAGATGTATTGATCTTTCATTTCACATTTAATGATGCCAAATAAAGCTTTGGGTTGGTAACTTTTAGCCTATAATCATGACCAATGAATATTTCAGTGATTCAGCAGATTCCTTTCAAGATACTTTCATATAAAATACCATATTGGAAAATTAAAATGTGTAGGTTTTGTCTGTCTCCTTACTTATACGTTATCGTTAATGCAATTAACATGAATAATCCATTTTCATTTCTTTGtataaactgaaaaataaagttAAGTATCTGAGAAATCTGATAA

Function

symbol description
fhl1b Predicted to enable transmembrane transporter binding activity. Acts upstream of or within animal organ development; calcium ion homeostasis; and locomotory behavior. Is expressed in several structures, including cardiovascular system; digestive system; hypochord; liver primordium; and musculature system. Human ortholog(s) of this gene implicated in Uruguay faciocardiomusculoskeletal syndrome; X-linked Emery-Dreifuss muscular dystrophy 6; reducing body myopathy 1A; and reducing body myopathy 1B. Orthologous to human FHL1 (four and a half LIM domains 1).

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0055074 calcium ion homeostasis biological_process
GO:0007626 locomotory behavior biological_process
GO:0001889 liver development biological_process
GO:1990798 pancreas regeneration biological_process
GO:0046872 metal ion binding molecular_function
GO:0044325 ion channel binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031219-1 Predicted to enable transmembrane transporter binding activity. Acts upstream of or within animal organ development; calcium ion homeostasis; and locomotory behavior. Is expressed in several structures, including cardiovascular system; digestive system; hypochord; liver primordium; and musculature system. Human ortholog(s) of this gene implicated in Uruguay faciocardiomusculoskeletal syndrome; X-linked Emery-Dreifuss muscular dystrophy 6; reducing body myopathy 1A; and reducing body myopathy 1B. Orthologous to human FHL1 (four and a half LIM domains 1).

Ensembl:

ensembl_id ENSDARG00000056653

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004175 False 1805 mRNA 0.42 6 26597990 26621189
TCONS_00004176 False 927 lncRNA 0.40 3 26612321 26617605
TCONS_00004177 True 1444 mRNA 0.43 5 26612321 26620946

Neighbor

gene id symbol gene type direction distance location
XLOC_002165 slc9a6b coding upstream 190 26571174 ~ 26597800 (+)
XLOC_002163 synj1 coding upstream 28640 26515946 ~ 26569350 (+)
XLOC_002164 NA coding upstream 33469 26564221 ~ 26564521 (+)
XLOC_002162 BX530069.2 coding upstream 291647 26306229 ~ 26306343 (+)
XLOC_002161 NA coding upstream 324842 26269060 ~ 26273148 (+)
XLOC_002167 NA coding downstream 7604 26628793 ~ 26629282 (+)
XLOC_002168 adgrg4b coding downstream 13283 26634472 ~ 26637493 (+)
XLOC_002169 adgrg4b coding downstream 24764 26645953 ~ 26652593 (+)
XLOC_002170 htatsf1 coding downstream 31670 26652859 ~ 26667243 (+)
XLOC_002171 si:ch73-52f15.5 coding downstream 46286 26667475 ~ 26677986 (+)
XLOC_002158 BX530083.1 non-coding upstream 633591 25964284 ~ 25964399 (+)
XLOC_002156 NA non-coding upstream 832419 25762203 ~ 25765571 (+)
XLOC_002174 CR545465.1 non-coding downstream 145196 26766385 ~ 26771677 (+)
XLOC_002175 NA non-coding downstream 165180 26786369 ~ 26786785 (+)
XLOC_002181 NA non-coding downstream 261513 26882702 ~ 26883139 (+)
XLOC_002190 NA non-coding downstream 440572 27061761 ~ 27064405 (+)

Expression


Co-expression Network