Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004176 |
| length | 927 |
| lncRNA type | retained_intron |
| GC content | 0.40 |
| exon number | 3 |
| gene id | XLOC_002166 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 26597990 ~ 26621189 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007517 | muscle organ development | biological_process |
| GO:0031018 | endocrine pancreas development | biological_process |
| GO:0055074 | calcium ion homeostasis | biological_process |
| GO:0007626 | locomotory behavior | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:1990798 | pancreas regeneration | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0044325 | ion channel binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-031219-1 | Predicted to enable transmembrane transporter binding activity. Acts upstream of or within animal organ development; calcium ion homeostasis; and locomotory behavior. Is expressed in several structures, including cardiovascular system; digestive system; hypochord; liver primordium; and musculature system. Human ortholog(s) of this gene implicated in Uruguay faciocardiomusculoskeletal syndrome; X-linked Emery-Dreifuss muscular dystrophy 6; reducing body myopathy 1A; and reducing body myopathy 1B. Orthologous to human FHL1 (four and a half LIM domains 1). |
| ensembl_id | ENSDART00000138474 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005714 | lncRNA | upstream | 47800 | 26564221 ~ 26564521 (+) | True | XLOC_002164 |
| TCONS_00004172 | lncRNA | upstream | 73684 | 26531877 ~ 26538637 (+) | True | XLOC_002163 |
| TCONS_00005901 | lncRNA | upstream | 339173 | 26269060 ~ 26273148 (+) | True | XLOC_002161 |
| TCONS_00005900 | lncRNA | upstream | 846750 | 25762203 ~ 25765571 (+) | True | XLOC_002156 |
| TCONS_00005899 | lncRNA | upstream | 909914 | 25687634 ~ 25702407 (+) | True | XLOC_002154 |
| TCONS_00005715 | lncRNA | downstream | 11188 | 26628793 ~ 26629282 (+) | True | XLOC_002167 |
| TCONS_00004188 | lncRNA | downstream | 148780 | 26766385 ~ 26771677 (+) | True | XLOC_002174 |
| TCONS_00005716 | lncRNA | downstream | 168764 | 26786369 ~ 26786785 (+) | True | XLOC_002175 |
| TCONS_00005717 | lncRNA | downstream | 265097 | 26882702 ~ 26883139 (+) | True | XLOC_002181 |
| TCONS_00004206 | lncRNA | downstream | 355996 | 26973601 ~ 26976954 (+) | True | XLOC_002186 |
| TCONS_00004174 | mRNA | upstream | 14521 | 26571193 ~ 26597800 (+) | True | XLOC_002165 |
| TCONS_00004173 | mRNA | upstream | 23235 | 26571174 ~ 26589086 (+) | False | XLOC_002165 |
| TCONS_00004171 | mRNA | upstream | 42971 | 26515946 ~ 26569350 (+) | False | XLOC_002163 |
| TCONS_00004169 | mRNA | upstream | 484142 | 26118122 ~ 26128179 (+) | True | XLOC_002160 |
| TCONS_00004167 | mRNA | upstream | 495685 | 25982212 ~ 26116636 (+) | False | XLOC_002159 |
| TCONS_00004178 | mRNA | downstream | 16867 | 26634472 ~ 26637493 (+) | True | XLOC_002168 |
| TCONS_00004179 | mRNA | downstream | 28348 | 26645953 ~ 26652593 (+) | False | XLOC_002169 |
| TCONS_00004180 | mRNA | downstream | 28499 | 26646104 ~ 26651925 (+) | True | XLOC_002169 |
| TCONS_00004181 | mRNA | downstream | 35254 | 26652859 ~ 26667243 (+) | True | XLOC_002170 |
| TCONS_00004182 | mRNA | downstream | 49870 | 26667475 ~ 26677836 (+) | False | XLOC_002171 |
| TCONS_00004170 | other | upstream | 305978 | 26306229 ~ 26306343 (+) | True | XLOC_002162 |
| TCONS_00004166 | other | upstream | 647922 | 25964284 ~ 25964399 (+) | True | XLOC_002158 |
| TCONS_00004165 | other | upstream | 651573 | 25948242 ~ 25960748 (+) | True | XLOC_002157 |
| TCONS_00004149 | other | upstream | 1939392 | 24668774 ~ 24672929 (+) | False | XLOC_002143 |
| TCONS_00004147 | other | upstream | 1947872 | 24660142 ~ 24664449 (+) | False | XLOC_002143 |
| TCONS_00004210 | other | downstream | 445569 | 27063174 ~ 27063257 (+) | False | XLOC_002190 |
| TCONS_00004211 | other | downstream | 445749 | 27063354 ~ 27063438 (+) | True | XLOC_002190 |
| TCONS_00004216 | other | downstream | 1542692 | 28160297 ~ 28162247 (+) | True | XLOC_002194 |
| TCONS_00004217 | other | downstream | 1635073 | 28252678 ~ 28252795 (+) | True | XLOC_002196 |
| TCONS_00004234 | other | downstream | 2649186 | 29266791 ~ 29268413 (+) | True | XLOC_002204 |
