RNA id: TCONS_00004180



Basic Information


Item Value
RNA id TCONS_00004180
length 1221
RNA type mRNA
GC content 0.45
exon number 8
gene id XLOC_002169
representative True

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26645953 ~ 26652593 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGGCTGTCAGTTTTACAGTCTTTATCTCATATATGACACATTCTTTAATGCATTGGCCTCAGGATGATCCGGATGggaaaaaactgaacacttttgTGGTGTCTGCCAGTGTGACTAATGCCACAGGACCCATTGAAAACCTTAAAGAATATGTTGCAGTCACTCTACACCACCTACAAACTAAGACAAAGGACCAGGATGTCCATTGCGTCTACTGGGATTTTAATAAGAATGATGGATATGGAGGATGGAGTCCAAAGGGGTGCTGGACGTATAATATCAGCAAGGATTACACAACCTGTCTATGTGACCACATGACCCACTTTGGAGTGCTTGTGgATGTTTCCAGAACTCCTATTGATGAGAAGAACGAGCGAATCCTCACTATTATCACATACATGGGCTGCGGTGTGTCTTCATGCTTTCTTGGGATCACAGTGTTAACCTACACCCTCTTAGAGAAGTTAAGGAGAGATTACCCATCCAAAATTCTGTTAAACTTgtcccttgctttactgggactgaACCTGGTGTTCCTGCTGAACTCCTGGATATCTTCTTTTGGCAACTACGGCCTTTGCATTGCTGTAGCGGCCACTTTACACTATTTCTTACTCACTTCCTTCACCTGGATGGGCTTGGGAGCTGTGAATATGTACTTTGCTCTGGTCAAAGTGTTCAATGTGTATGTGCCATCATACATTTTGAAGTTCTGCCTGCTTGGCTGGGGGATTCCACTTATAATTTGTGGCTTGGTACTGGCTATAAAGAGAGATGCGTATGGCCTGAGTGATTCCCAATCCACCCTGGATGATTCTGAAATGTTCTGCTGGGTGAAAAACGATGTGGTTTTCTACGTGTCGGTAGTGAGCTACATAGCCTTCATACTGCTGTGCAATGGCTCCATCTTCTTAGTGGTTCTGATTCAGATCAGAAATATGCAAGTCAATCAGCCAGCTGGAACCAGAAGTGGGATCTTGAAGGACCTGCGGGCTGTGGCGAGCCTTACCTTTTTGTTGGGTCTCACCTGGTCTGTGGCTTTTCTCGCTTGGGGTCCTGTCAAAGTGTTCCTTCTCTACTTGTTCTCCATAATGAACAGCCTACAAGGATTCTTCATTTTTGTGTTCCACTGTCTCGTGAAGGAAAATGTACGCAAGCAATGGAGAATACATTTATGTTGTGGTGCTTTCAAGCTGCAGGAGTACTCTGGTAAGGCTTAA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000187685

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00005715 lncRNA upstream 16822 26628793 ~ 26629282 (+) True XLOC_002167
TCONS_00004176 lncRNA upstream 28499 26612321 ~ 26617605 (+) False XLOC_002166
TCONS_00005714 lncRNA upstream 81583 26564221 ~ 26564521 (+) True XLOC_002164
TCONS_00004172 lncRNA upstream 107467 26531877 ~ 26538637 (+) True XLOC_002163
TCONS_00005901 lncRNA upstream 372956 26269060 ~ 26273148 (+) True XLOC_002161
TCONS_00004188 lncRNA downstream 114460 26766385 ~ 26771677 (+) True XLOC_002174
TCONS_00005716 lncRNA downstream 134444 26786369 ~ 26786785 (+) True XLOC_002175
TCONS_00005717 lncRNA downstream 230777 26882702 ~ 26883139 (+) True XLOC_002181
TCONS_00004206 lncRNA downstream 321676 26973601 ~ 26976954 (+) True XLOC_002186
TCONS_00005902 lncRNA downstream 409836 27061761 ~ 27064405 (+) False XLOC_002190
TCONS_00004178 mRNA upstream 8611 26634472 ~ 26637493 (+) True XLOC_002168
TCONS_00004175 mRNA upstream 24915 26597990 ~ 26621189 (+) False XLOC_002166
TCONS_00004177 mRNA upstream 25158 26612321 ~ 26620946 (+) True XLOC_002166
TCONS_00004174 mRNA upstream 48304 26571193 ~ 26597800 (+) True XLOC_002165
TCONS_00004173 mRNA upstream 57018 26571174 ~ 26589086 (+) False XLOC_002165
TCONS_00004181 mRNA downstream 934 26652859 ~ 26667243 (+) True XLOC_002170
TCONS_00004182 mRNA downstream 15550 26667475 ~ 26677836 (+) False XLOC_002171
TCONS_00004183 mRNA downstream 15558 26667483 ~ 26677943 (+) False XLOC_002171
TCONS_00004184 mRNA downstream 17252 26669177 ~ 26677986 (+) True XLOC_002171
TCONS_00004185 mRNA downstream 37337 26689262 ~ 26692647 (+) False XLOC_002172
TCONS_00004170 other upstream 339761 26306229 ~ 26306343 (+) True XLOC_002162
TCONS_00004166 other upstream 681705 25964284 ~ 25964399 (+) True XLOC_002158
TCONS_00004165 other upstream 685356 25948242 ~ 25960748 (+) True XLOC_002157
TCONS_00004149 other upstream 1973175 24668774 ~ 24672929 (+) False XLOC_002143
TCONS_00004147 other upstream 1981655 24660142 ~ 24664449 (+) False XLOC_002143
TCONS_00004210 other downstream 411249 27063174 ~ 27063257 (+) False XLOC_002190
TCONS_00004211 other downstream 411429 27063354 ~ 27063438 (+) True XLOC_002190
TCONS_00004216 other downstream 1508372 28160297 ~ 28162247 (+) True XLOC_002194
TCONS_00004217 other downstream 1600753 28252678 ~ 28252795 (+) True XLOC_002196
TCONS_00004234 other downstream 2614866 29266791 ~ 29268413 (+) True XLOC_002204

Expression Profile


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