Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004183 |
| length | 870 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 4 |
| gene id | XLOC_002171 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 26667475 ~ 26677986 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-091204-341 | Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. |
| ensembl_id | ENSDART00000147013 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005715 | lncRNA | upstream | 38201 | 26628793 ~ 26629282 (+) | True | XLOC_002167 |
| TCONS_00004176 | lncRNA | upstream | 49878 | 26612321 ~ 26617605 (+) | False | XLOC_002166 |
| TCONS_00005714 | lncRNA | upstream | 102962 | 26564221 ~ 26564521 (+) | True | XLOC_002164 |
| TCONS_00004172 | lncRNA | upstream | 128846 | 26531877 ~ 26538637 (+) | True | XLOC_002163 |
| TCONS_00005901 | lncRNA | upstream | 394335 | 26269060 ~ 26273148 (+) | True | XLOC_002161 |
| TCONS_00004188 | lncRNA | downstream | 88442 | 26766385 ~ 26771677 (+) | True | XLOC_002174 |
| TCONS_00005716 | lncRNA | downstream | 108426 | 26786369 ~ 26786785 (+) | True | XLOC_002175 |
| TCONS_00005717 | lncRNA | downstream | 204759 | 26882702 ~ 26883139 (+) | True | XLOC_002181 |
| TCONS_00004206 | lncRNA | downstream | 295658 | 26973601 ~ 26976954 (+) | True | XLOC_002186 |
| TCONS_00005902 | lncRNA | downstream | 383818 | 27061761 ~ 27064405 (+) | False | XLOC_002190 |
| TCONS_00004181 | mRNA | upstream | 240 | 26652859 ~ 26667243 (+) | True | XLOC_002170 |
| TCONS_00004179 | mRNA | upstream | 14890 | 26645953 ~ 26652593 (+) | False | XLOC_002169 |
| TCONS_00004180 | mRNA | upstream | 15558 | 26646104 ~ 26651925 (+) | True | XLOC_002169 |
| TCONS_00004178 | mRNA | upstream | 29990 | 26634472 ~ 26637493 (+) | True | XLOC_002168 |
| TCONS_00004177 | mRNA | upstream | 46537 | 26612321 ~ 26620946 (+) | True | XLOC_002166 |
| TCONS_00004185 | mRNA | downstream | 11319 | 26689262 ~ 26692647 (+) | False | XLOC_002172 |
| TCONS_00004186 | mRNA | downstream | 11384 | 26689327 ~ 26690951 (+) | True | XLOC_002172 |
| TCONS_00004187 | mRNA | downstream | 69812 | 26747755 ~ 26757486 (+) | True | XLOC_002173 |
| TCONS_00004189 | mRNA | downstream | 122270 | 26800213 ~ 26811397 (+) | True | XLOC_002176 |
| TCONS_00004190 | mRNA | downstream | 135767 | 26813710 ~ 26822190 (+) | True | XLOC_002177 |
| TCONS_00004170 | other | upstream | 361140 | 26306229 ~ 26306343 (+) | True | XLOC_002162 |
| TCONS_00004166 | other | upstream | 703084 | 25964284 ~ 25964399 (+) | True | XLOC_002158 |
| TCONS_00004165 | other | upstream | 706735 | 25948242 ~ 25960748 (+) | True | XLOC_002157 |
| TCONS_00004149 | other | upstream | 1994554 | 24668774 ~ 24672929 (+) | False | XLOC_002143 |
| TCONS_00004147 | other | upstream | 2003034 | 24660142 ~ 24664449 (+) | False | XLOC_002143 |
| TCONS_00004210 | other | downstream | 385231 | 27063174 ~ 27063257 (+) | False | XLOC_002190 |
| TCONS_00004211 | other | downstream | 385411 | 27063354 ~ 27063438 (+) | True | XLOC_002190 |
| TCONS_00004216 | other | downstream | 1482354 | 28160297 ~ 28162247 (+) | True | XLOC_002194 |
| TCONS_00004217 | other | downstream | 1574735 | 28252678 ~ 28252795 (+) | True | XLOC_002196 |
| TCONS_00004234 | other | downstream | 2588848 | 29266791 ~ 29268413 (+) | True | XLOC_002204 |
