XLOC_002177 (si:ch211-263p13.7)


Basic Information

Item Value
gene id XLOC_002177
gene name si:ch211-263p13.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26813710 ~ 26822190 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004190
CCGTTCTTCATCATCTGGTTCTGTAGCATCTGGAACGTCCTCTTTTTCCCAGTCTACTATCTGTGCCATCTTCTCACAGAGAAACAGAAGAGGTTGCCAACAACCGAGTTCAGAAAGTGCAGTGTGTTCCTGGGTGAGGAGTTGACTGTGCGGTTTGTTCTGAAAGGAGCAGCTCCATTCTCGCTGCTATGGGGTTTATCTGGATATCTGTACTTGCTGGCGCTCTGCCGCATCTCCAAAGTGGACGTAAGTGCCGTCCTCTGCTGCTGCCAGGCTTTTACTTTCCTCCTTTCATGGATCGGACTCAAAGACCGCTTTATGGGTGTGAGGATAGTGGCTGTCATCCTGTCCATCACTGGGATTGTTATGTTGGCCTACGGGGACGGATTTCATAGTGACTCAATCACAGGAGTGGCACTGGGAGTTGGTTCGGCCTCAACTTTAGCTTTATTCAAGGTGCTTTTCAGAAAGTGCGTAGGGGAAGTGCAGCCAGGTCCTGCCAGCGTGCTGTTGTCCTGCGTGGGTCTGTGCAGCTTTGTCCTGCactcgtgggtgtgtgtgttgcTTTATTTCACACACGTGGAATACTGGCCTCCCTCTCAGCATATCCCCTGGGACAAACTATGCGTCATGGCTTCTCTACTGCTGGttttcaaTCTGCTGGTAAATCTGGGAGAAATGTTTACGTACCCCAGTTTAATTTCCCTGGGAATTCTCTTGACAATTCCAGCAAGTGCAGCTGTGGATGGCTTAGTGACGTTAACTCTGCAGATCAGCCATGTGCGAGCAGCGGCCGCCGGCATCATCTCAGCTGGATATCTGATGCTGCAGCTTCCAGAAAACTGGGATGAGAGCACTTTCCGCTGGCTCAGCGCACT

Function

symbol description
si:ch211-263p13.7 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000077622

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004190 True 878 mRNA 0.51 6 26813710 26822190

Neighbor

gene id symbol gene type direction distance location
XLOC_002176 arr3a coding upstream 2313 26800213 ~ 26811397 (+)
XLOC_002175 NA coding upstream 26925 26786369 ~ 26786785 (+)
XLOC_002174 CR545465.1 coding upstream 42033 26766385 ~ 26771677 (+)
XLOC_002173 f9b coding upstream 56224 26747755 ~ 26757486 (+)
XLOC_002172 tmtops3b coding upstream 121063 26689262 ~ 26692647 (+)
XLOC_002178 znrd2 coding downstream 4923 26827113 ~ 26832044 (+)
XLOC_002179 fam89b coding downstream 12795 26834985 ~ 26837173 (+)
XLOC_002180 ehbp1l1b coding downstream 49296 26871486 ~ 26925511 (+)
XLOC_002181 NA coding downstream 60512 26882702 ~ 26883139 (+)
XLOC_002182 rab1bb coding downstream 104464 26926654 ~ 26933708 (+)
XLOC_002167 NA non-coding upstream 184428 26628793 ~ 26629282 (+)
XLOC_002164 NA non-coding upstream 249189 26564221 ~ 26564521 (+)
XLOC_002162 BX530069.2 non-coding upstream 507367 26306229 ~ 26306343 (+)
XLOC_002190 NA non-coding downstream 239571 27061761 ~ 27064405 (+)
XLOC_002193 NA non-coding downstream 346936 27169126 ~ 27198982 (+)
XLOC_002195 NA non-coding downstream 1381574 28203764 ~ 28246420 (+)
XLOC_002196 CU207388.1 non-coding downstream 1430488 28252678 ~ 28252795 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_12478136_12484791 NA coding CI01000304 null 12478136 ~ 12484978 (+)