CI01000304_12478136_12484791


Basic Information

Item Value
gene id CI01000304_12478136_12484791
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12478136 ~ 12484978 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_12478136_12484791.mRNA
CAAGTGAGAAGGATCCTCAGGAACAGAATTTAATTCAGGATGAATCTGATGCAGAAAGACCATCTAAACGTTGCTGCACTCGCTGGCCATTCCGAGCTGTGCGGAAGGTCACATGTGGGCTCATTTTAGGGGCTTGTGTGGCTGTTTCCTGGGCCTGGGAGAAACAGAAGCAGTTGCCAACCACCGAGTTCAGAAAATGTAGTCAGTTTCTGGGTGAAGAACTGACCATAAGAATTGTTCTGAAAGGAGCAGCTCCATTCTCAGTGCTATGGAGTTTATCTGGTTATCTGTACTTATTGGCGCTTTGTCGCATCTCCAAAGTGGACGTAAGTGCCGTCCTCTGCTGCAGCCAAGCTTTTACATTCCTCCTTTCATGGATCGGACTCAAGGACCGCTTCATGGGTGTCAGGGTAGTAGCTGCCATCCTGTCCATCACTGGCATTGTTATGTTGGCCTATGGGGATGGTTTTCATAGCGACTCAATCACAGGAGTGGCACTGGGAGTTGGCTCAGCTTCAACTTCTGCTTTATTCAAGGTGCTTTTCAGAAAGCGTGTAGGGAATGTCCATCCAGGCCCTGCCAGTGTGTTACTATCCTGTGCGGTTTTCAATGTGCTGGTAAATGTGGGAGGAATGTTTACGTACCCTAGTTTAATTTCTCTGGGAATTCTCTTGACCATCCCAGCAAGTGCAGCTGTAGATACATTTGTGACGGTCACTCTGCACATTAGCCATGTGCGAGCAGCGGCAGCCAGCATCATCTCAGCAGGGTATCTCATGCTGCAGCTTCCAGAAAACTGGGATGAGAGCACTTTGCGCTGGCTCAGCACACTGTGGCGTGGAAACTGGCGAGAGGACAGTGTCGTCGGAGAAGAGTCTGTAGTGGAACCTGCTGGCATTGCACGAGCAAAACCCAAACCAGCCGTAGTGGCACTCAGCTGAGACTATTTTCAGAACAATTGAGTTAGATCTGAGTGTTGATGTGATAAAATCATAAAATGATTTGTGTCTGATGTGTAAATGCAATTATTCACATTGTAGTTCTGTTTTCATTTGTTTCAAAATGTCTTTATTAGCTGATGAAACACCAGATTCAATGATGATGATAATAAGAAAGATTATAATGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_12478136_12484791.mRNA True 1128 mRNA 0.46 7 12478136 12484978

Neighbor

gene id symbol gene type direction distance location
CI01000304_12468041_12473615 ARR3A coding upstream 4428 12468041 ~ 12473708 (+)
CI01000304_12437868_12439019 NA coding upstream 39117 12434972 ~ 12439086 (+)
CI01000304_12424217_12429262 NA coding upstream 48728 12423206 ~ 12430351 (+)
CI01000304_12394477_12400175 TMTOPS3B coding upstream 77821 12393500 ~ 12400315 (+)
CI01000304_12385473_12389970 NA coding upstream 87609 12385473 ~ 12390527 (+)
CI01000304_12485748_12487703 SSSCA1 coding downstream 770 12485748 ~ 12487763 (+)
CI01000304_12489630_12490940 FAM89B coding downstream 4604 12489582 ~ 12491500 (+)
CI01000304_12496984_12537562 EHBP1L1B, FRMD8 coding downstream 11901 12496879 ~ 12539153 (+)
CI01000304_12539537_12551905 VPS51 coding downstream 54351 12539329 ~ 12552251 (+)
CI01000304_12556446_12557806 FAUB, UBIM, FAU coding downstream 71468 12556446 ~ 12558076 (+)
G425778 NA non-coding upstream 22283 12455493 ~ 12455853 (+)
G425777 NA non-coding upstream 22741 12455181 ~ 12455395 (+)
G425764 NA non-coding upstream 175410 12302340 ~ 12302726 (+)
G425765 NA non-coding upstream 177514 12300413 ~ 12300622 (+)
G425666 NA non-coding upstream 220942 12255099 ~ 12257194 (+)
G425796 NA non-coding downstream 76096 12561074 ~ 12561425 (+)
CI01000304_12583384_12588591 WDR74 non-coding downstream 103943 12583384 ~ 12589788 (+)
G425812 NA non-coding downstream 106278 12591256 ~ 12593865 (+)
G425830 NA non-coding downstream 199679 12684657 ~ 12684926 (+)
G425816 NA non-coding downstream 201150 12686128 ~ 12688600 (+)
G425718 NA other upstream 39050 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 1922432 10555216 ~ 10572164 (+)
G424251 NA other upstream 2285241 10188822 ~ 10189404 (+)
G424246 NA other upstream 2350814 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 2912563 9561005 ~ 9565778 (+)
CI01000304_13578347_13595075 NA other downstream 1071473 13578049 ~ 13595097 (+)
G426312 NA other downstream 1845070 14330048 ~ 14330886 (+)
G426828 NA other downstream 2463912 14948890 ~ 14950592 (+)
G427860 NA other downstream 3400476 15885454 ~ 15889591 (+)
G428017 NA other downstream 3598252 16083230 ~ 16083714 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002177 si:ch211-263p13.7 coding NC_007121.7 CM002894.2 26813710 ~ 26822190 (+)