CI01000304_12485748_12487703 (SSSCA1)


Basic Information

Item Value
gene id CI01000304_12485748_12487703
gene name SSSCA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12485748 ~ 12487763 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_12485748_12487703.mRNA
ATGAGGAATCTCTGTGCTTTGATGAATCTAGATGATGAGGACTTTGAATGGGAGCCTCCCTCCGAGGCGGAGATGAAGGTGATTCAGGCTCGACGGGAGCGTCAGGACAAGATCAGCAAGCTGATGGGAGACTATCTGCTGAAGGGATATAAGATGCTGGGGGATTGCTGTGAGCTGTGTGGGACAATTCTGCTGCAAGATAAGCAGAAGAAATATTACTGTGTTGCTTGTCAAGAGCTGGACTCCGATATTGACAAGGACAACCCAGCTTTAAATGCTCAGGCAGCGTTGTCACAGGTACGAGAGCGTCAGCTTGCAGCTCAGTCTCTCCCTGAATCTAACGGAGCCTCATCCAGCGAACCCCCTCTCTCCATCACGGGCCAGCCCCGGCCAGAGCACTGCGAGGGGGCCGCGTCTGGCCTGAGAGGTCCCCCTCCCACCATACAGTCCACTCCTCTTTCTGTCCCAACCGCCAGCTCCAACTTCCTGCCACCAGCCAACCCTCCTGTCCAGACTACACCTCCTATAGGGCCCTTGGGCAACCCCCTCCAACACGCAGCCTTGTCAAGCGCAGAGGAGGCAGTGCTACACAAACTCAGATGGGCCACGCAGGAGCTCCAGCACTCTGCGTCAGTGGAAGCCAGTATCCAGCTCTGCAATCTGATCCGAGGCTGTGCCGAATCCCTGCGTAGCTTGAAAGAGCTGCAGCTCTCATAAGACTGAACTACAGACAGGGCTGTAACAGCACACACACATAAGGAAATATGAGCAGCACTA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_12485748_12487703.mRNA True 777 mRNA 0.55 3 12485748 12487763

Neighbor

gene id symbol gene type direction distance location
CI01000304_12478136_12484791 NA coding upstream 770 12478136 ~ 12484978 (+)
CI01000304_12468041_12473615 ARR3A coding upstream 12040 12468041 ~ 12473708 (+)
CI01000304_12437868_12439019 NA coding upstream 46729 12434972 ~ 12439086 (+)
CI01000304_12424217_12429262 NA coding upstream 56340 12423206 ~ 12430351 (+)
CI01000304_12394477_12400175 TMTOPS3B coding upstream 85433 12393500 ~ 12400315 (+)
CI01000304_12489630_12490940 FAM89B coding downstream 1819 12489582 ~ 12491500 (+)
CI01000304_12496984_12537562 EHBP1L1B, FRMD8 coding downstream 9116 12496879 ~ 12539153 (+)
CI01000304_12539537_12551905 VPS51 coding downstream 51566 12539329 ~ 12552251 (+)
CI01000304_12556446_12557806 FAUB, UBIM, FAU coding downstream 68683 12556446 ~ 12558076 (+)
CI01000304_12569155_12569469 NA coding downstream 81392 12569155 ~ 12569734 (+)
G425778 NA non-coding upstream 29895 12455493 ~ 12455853 (+)
G425777 NA non-coding upstream 30353 12455181 ~ 12455395 (+)
G425764 NA non-coding upstream 183022 12302340 ~ 12302726 (+)
G425765 NA non-coding upstream 185126 12300413 ~ 12300622 (+)
G425666 NA non-coding upstream 228554 12255099 ~ 12257194 (+)
G425796 NA non-coding downstream 73311 12561074 ~ 12561425 (+)
CI01000304_12583384_12588591 WDR74 non-coding downstream 101158 12583384 ~ 12589788 (+)
G425812 NA non-coding downstream 103493 12591256 ~ 12593865 (+)
G425830 NA non-coding downstream 196894 12684657 ~ 12684926 (+)
G425816 NA non-coding downstream 198365 12686128 ~ 12688600 (+)
G425718 NA other upstream 46662 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 1930044 10555216 ~ 10572164 (+)
G424251 NA other upstream 2292853 10188822 ~ 10189404 (+)
G424246 NA other upstream 2358426 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 2920175 9561005 ~ 9565778 (+)
CI01000304_13578347_13595075 NA other downstream 1068688 13578049 ~ 13595097 (+)
G426312 NA other downstream 1842285 14330048 ~ 14330886 (+)
G426828 NA other downstream 2461127 14948890 ~ 14950592 (+)
G427860 NA other downstream 3397691 15885454 ~ 15889591 (+)
G428017 NA other downstream 3595467 16083230 ~ 16083714 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002178 znrd2 coding NC_007121.7 CM002894.2 26827113 ~ 26832044 (+)