CI01000304_12468041_12473615 (ARR3A)


Basic Information

Item Value
gene id CI01000304_12468041_12473615
gene name ARR3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12468041 ~ 12473708 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_12468041_12473615.mRNA
ACGGGCTGCGGATTACCAGAGAGAGGGAGCAGATCGCCCTATCGCCCTACCAGTGAACAGGAAAATCATTGTACAATGGCAGACAAAGTTTACAAAAAGACCAGTGGAAATGGCCAGATTCATGCTTGAATTTTCATATTATGTGGAAATACATGAGTGTAATGCACTGTTTATGTTTCAGCTCACTCTCTACCTGGGGAAGAGAGACTTTGTTGACCATGTTGACTCAGTTGACCCTGTTGAGGGTGTAGTGAAAATCGACCCTGCAGACCTTGGAGACAAAAAAGTTTGGATTCAGCTGGCCTGCGCTTTCCGTTATGGTCGTGAAGACCTGGATGTGATTGGGCTTTCCTTCAGAAAAGACATCTGGATTCAGCACATACAGCTATATCCTGACGCAGGCCACAAACCCACCCTGACAGAGATGCACGACACTCTCCTGAAGAAAGCTGGAGAGCAGGGCCATCCCTTCACTTTTAATATCCCTACCAACCTCCCCTGCTCTGTTACACTTCAGCCTGGCCCAGATGACAAAGGAAAGGCGTGCGGTGTTGACTTTGAGGTCAAGGCCTATGTGGCCAAATCAGCTGATGACCCCGATGAGAAAATCGACAAGAAGGACACTTGCCGCCTTATTATCCGTAAAATCCAGTTCGCTCCTGATAACACAGGATCTGGACAGAAAGCTGAGCTCTGCAAGAGCTTTATGATGTCTGATAAGCCTGTTCTTCTGGAAGCCTCTCTGAGCAAGGAAATCTACTACCATGGCGATCCCATCCCCATCAATGTTAAGGTCAAGAATGAGACCAACAAAGTTGTGAAAAAAATAAAGATTACAGTTGACCAAACCACAGACGTCGTTCTGTACTCAGCCGACAAGTACACCAAGAATGTGCTGAGTGAAGAGTTTGCGGAAACTATAGAAGGCAGTGCTAATTTTGAAAAATCCCTTGAGATCATTCCTTTATTGGCAAACAACAAGGAGAAACGTGGCCTGGCGCTGGACGGCAGACTTAAAGATGAAGACACCAATTTGGCCTCAACCACTATAATAAGGACAGGAATGGATAAGGAGATGTTAGGAATTCTGGTGTCCTACAAGATCAAAGTTAACCTCATGGTATCAGGTGGAGGTGATGTGACAGTGGAGCTGCCTCTGACCCTGATGCACCCCAAACCTAAAGAGTCTAGAGTCATTTAAACCAGCACCCTTAAATCACAGCAACTCATGTGACTTTGTGTAATGTTTGTTTTGTCATGTGTGGAATTTTTGACTCTTGAGTCATTAAACCAA

Function

symbol description
arr3a Predicted to enable G protein-coupled receptor binding activity. Acts upstream of or within visual perception. Is expressed in epiphysis and retina. Human ortholog(s) of this gene implicated in myopia. Orthologous to human ARR3 (arrestin 3).

NR:

description
Arrestin 3, retinal (X-arrestin)

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K04439 ARRB; beta-arrestin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_12468041_12473615.mRNA True 1294 mRNA 0.45 15 12468041 12473708

Neighbor

gene id symbol gene type direction distance location
CI01000304_12437868_12439019 NA coding upstream 29022 12434972 ~ 12439086 (+)
CI01000304_12424217_12429262 NA coding upstream 38633 12423206 ~ 12430351 (+)
CI01000304_12394477_12400175 TMTOPS3B coding upstream 67726 12393500 ~ 12400315 (+)
CI01000304_12385473_12389970 NA coding upstream 77514 12385473 ~ 12390527 (+)
CI01000304_12375591_12385064 HTATSF1 coding upstream 82921 12375591 ~ 12385120 (+)
CI01000304_12478136_12484791 NA coding downstream 4428 12478136 ~ 12484978 (+)
CI01000304_12485748_12487703 SSSCA1 coding downstream 12040 12485748 ~ 12487763 (+)
CI01000304_12489630_12490940 FAM89B coding downstream 15874 12489582 ~ 12491500 (+)
CI01000304_12496984_12537562 EHBP1L1B, FRMD8 coding downstream 23171 12496879 ~ 12539153 (+)
CI01000304_12539537_12551905 VPS51 coding downstream 65621 12539329 ~ 12552251 (+)
G425778 NA non-coding upstream 12188 12455493 ~ 12455853 (+)
G425777 NA non-coding upstream 12646 12455181 ~ 12455395 (+)
G425764 NA non-coding upstream 165315 12302340 ~ 12302726 (+)
G425765 NA non-coding upstream 167419 12300413 ~ 12300622 (+)
G425666 NA non-coding upstream 210847 12255099 ~ 12257194 (+)
G425796 NA non-coding downstream 87366 12561074 ~ 12561425 (+)
CI01000304_12583384_12588591 WDR74 non-coding downstream 115213 12583384 ~ 12589788 (+)
G425812 NA non-coding downstream 117548 12591256 ~ 12593865 (+)
G425830 NA non-coding downstream 210949 12684657 ~ 12684926 (+)
G425816 NA non-coding downstream 212420 12686128 ~ 12688600 (+)
G425718 NA other upstream 28955 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 1912337 10555216 ~ 10572164 (+)
G424251 NA other upstream 2275146 10188822 ~ 10189404 (+)
G424246 NA other upstream 2340719 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 2902468 9561005 ~ 9565778 (+)
CI01000304_13578347_13595075 NA other downstream 1082743 13578049 ~ 13595097 (+)
G426312 NA other downstream 1856340 14330048 ~ 14330886 (+)
G426828 NA other downstream 2475182 14948890 ~ 14950592 (+)
G427860 NA other downstream 3411746 15885454 ~ 15889591 (+)
G428017 NA other downstream 3609522 16083230 ~ 16083714 (+)

Expression


Co-expression Network