CI01000304_12489630_12490940 (FAM89B)


Basic Information

Item Value
gene id CI01000304_12489630_12490940
gene name FAM89B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12489582 ~ 12491500 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_12489630_12490940.mRNA
GTTTAAAACCAGGATTTTATTTTAAAAGCGAAAACAGTGAAATCGGAAATGAACGGGTTTCAGTCCAGTCCTGCAGATTGTCCGGCTGGAAGCGTCTGTTCCATTGAAGGTTTGCCTCCCTTACCCAAAGGACTGAGTGGCATCCTAAACTCGAGCGGAGGGTCATGGAGGGACATTGAGAAGGTCTACAGCAAGAGGACGCGCATCCAAGCGGACATCAGCAAGTCCAGAGTGAGCGACTGTCTTGGCCGCAGTAAACCAGCGAGCCTTGACGCAGCGCTGGCCGTGCTGCGCAAAGAGATGGTTGGTCTTCGACAGTTAGACATGTCCTTGCTGTGCCAGTTGTGGTCTCTATATGAGTCCATACAGGAATACAAAGGAGCTTTCCAGGACATCTCCTCTTCTTTGTGCGAGAGCTCCTTCAACACCGAAAATGGTTATTCTGAAGATGAAGATGAGGAAGATGTAGATGAAAATGAAGGGGGGAGTGGGGAGACTCTGTTATCCTTTCCTCAGCCCACTCAGAACTCCCGAGACCAGTGGATCAAAGACTCTTTCCACATCCCCATTTAAAAGAAGTTTAAATGGGGATGTGTTATAGTTATAGATCTGTTATAAATATAGATCTGATCTCCCATGATTATCATCAGTATAAAAGGTGACAAACATGACCCCATTGCTTGAAGGATTCTATAGGCATCAAAATGATCAAGGCCTTTATTTTTGTAGGATACTATTACAATGGTGATTGTAAGCTTGTTTCAGGGGAACCATGGAAAACTGCCTTTTCACTGCCTGTAAGTCATAAAGACCGGATGTGGACTGACAGGAAGAGGATGTTGTGGCCAGAAACAGTGCAGTCTAGGATGTTTTTCTACTTATGGTAAAGCGTGTATACATCAAAAATGGAATTAAAGACATGCCTTACTATTCTCTCTTTTGATATATCAAGTCACAATTTCATTATATTATATAGATGTGTCAGATGTGTATTATCACTTGTCTATTTTCTTTATCACTTACCAGCATTTGAGATACTGTTTATTTTATTATACAACATTATTTTTACCACCTCTGTTTTTCATTAGTAAGTTCAACTGAATGCCGAATTTACATTTTGTACAAAATGAAAA

Function

symbol description
fam89b Orthologous to several human genes including FAM89B (family with sequence similarity 89 member B).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_12489630_12490940.mRNA True 1133 mRNA 0.41 2 12489582 12491500

Neighbor

gene id symbol gene type direction distance location
CI01000304_12485748_12487703 SSSCA1 coding upstream 1819 12485748 ~ 12487763 (+)
CI01000304_12478136_12484791 NA coding upstream 4604 12478136 ~ 12484978 (+)
CI01000304_12468041_12473615 ARR3A coding upstream 15874 12468041 ~ 12473708 (+)
CI01000304_12437868_12439019 NA coding upstream 50563 12434972 ~ 12439086 (+)
CI01000304_12424217_12429262 NA coding upstream 60174 12423206 ~ 12430351 (+)
CI01000304_12496984_12537562 EHBP1L1B, FRMD8 coding downstream 5379 12496879 ~ 12539153 (+)
CI01000304_12539537_12551905 VPS51 coding downstream 47829 12539329 ~ 12552251 (+)
CI01000304_12556446_12557806 FAUB, UBIM, FAU coding downstream 64946 12556446 ~ 12558076 (+)
CI01000304_12569155_12569469 NA coding downstream 77655 12569155 ~ 12569734 (+)
CI01000304_12583384_12588591 WDR74 coding downstream 91884 12583384 ~ 12589788 (+)
G425778 NA non-coding upstream 33729 12455493 ~ 12455853 (+)
G425777 NA non-coding upstream 34187 12455181 ~ 12455395 (+)
G425764 NA non-coding upstream 186856 12302340 ~ 12302726 (+)
G425765 NA non-coding upstream 188960 12300413 ~ 12300622 (+)
G425666 NA non-coding upstream 232388 12255099 ~ 12257194 (+)
G425796 NA non-coding downstream 69574 12561074 ~ 12561425 (+)
G425812 NA non-coding downstream 99756 12591256 ~ 12593865 (+)
G425830 NA non-coding downstream 193157 12684657 ~ 12684926 (+)
G425816 NA non-coding downstream 194628 12686128 ~ 12688600 (+)
G425718 NA other upstream 50496 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 1933878 10555216 ~ 10572164 (+)
G424251 NA other upstream 2296687 10188822 ~ 10189404 (+)
G424246 NA other upstream 2362260 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 2924009 9561005 ~ 9565778 (+)
CI01000304_13578347_13595075 NA other downstream 1064951 13578049 ~ 13595097 (+)
G426312 NA other downstream 1838548 14330048 ~ 14330886 (+)
G426828 NA other downstream 2457390 14948890 ~ 14950592 (+)
G427860 NA other downstream 3393954 15885454 ~ 15889591 (+)
G428017 NA other downstream 3591730 16083230 ~ 16083714 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002179 fam89b coding NC_007121.7 CM002894.2 26834985 ~ 26837173 (+)