XLOC_002172 (tmtops3b)


Basic Information

Item Value
gene id XLOC_002172
gene name tmtops3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26689262 ~ 26692647 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004185
ATGGTCACTGTCCCCTTCCTCCGGGACTCCTCGGTGAACGGCAGCCTGTTGGACTCTCTCTCTCCCGCCGATCAGACCGGATTCAGCCGCGCGGGATACACTGTGGTCGCGGTGATTTTGGGAATAATCTTTGTTTTCGGTTTCCTTTGTAACTTTGTCGTTCTTTTGGTGTTCGCTCGTTTTCATGTACTGAGGACCCCGATTAACTTGATACTGTTGAATATCATTGTGAGCGATATGCTGGTTTGTCTGTTCGGTACACCTTTAAGTTTCGCCGCGTCTGTTCACGGCCGGTGGCTGACGGGAGTTCACGGATGCAGGTGGTATGGTTTTGCCAACGCGTTGTTCGGTATCGTTTCACTGGTATCTCTTGCTGTGCTGTCATACGAGCGTTATAGTACCATCCTCTGCTCCTCAAAAGCAGATGCATCTGACTATAGGAAGGCCTGGCTCTTCATCACAGGCTGCTGGCTGTACTCTCTGCTATGGACTGTACCACCGCTCTTAGGCTGGAGCAGCTATGGTCCTGAGGGTCCCGGCACCACCTGTTCAGTCCAGTGGAACAAGCGCTCTCCGGAAACCCGGTCTTACGTCATCTGCCTCTTTGTCTTCTGTCTTCTGCTGCCTCTCCTTCTGATGGTCTACTGCTATGGCAAGATCCTCATTGCCATTCATGGGGTTGCTAAGATCAATCAGACAGCTGCACAGCGGAGGGAAACACACGTGCTGGTGATGGTGGTTTCCATGGTGTCCTGTTACCTGCTCTGCTGGATGCCGTACGGGGTCATGGCATTGCTCGGCACATTCAGCGCTGGCATTACCAGCCCCACAGCCAGCGTCGTGTCATCCTTACTTGCAAAGAGTAGCACCGTTCTGAACCCCATCATCTATGTATTGTTCAATAATCAGTTTTACAGGTGCTTTATAGCATTAGTAAGAAGCGGAGCAGAACCTCCAGTTCATCTCACCCTTCACACAGAAGAAGGTGCTGCTCAACAACACTGCATCCCTATGGGATTATATGCTGCTACCTCTCCACCTGAGAGCCCAAGCCTGATGGACACCCCCAAATGA
>TCONS_00004186
CGCCGATCAGACCGGATTCAGCCGCGCGGGATACACTGTGGTCGCGGTGATTTTGGGAATAATCTTTGTTTTCGGTTTCCTTTGTAACTTTGTCGTTCTTTTGGTGTTCGCTCGTTTTCATGTACTGAGGACCCCGATTAACTTGATACTGTTGAATATCATTGTGAGCGATATGCTGGTTTGTCTGTTCGGTACACCTTTAAGTTTCGCCGCGTCTGTTCACGGCCGGTGGCTGACGGGAGTTCACGGATGCAGGTGGTATGGTTTTGCCAACGCGTTGTTCGGTATCGTTTCACTGGTATCTCTTGCTGTGCTGTCATACGAGCGTTATAGTACCATCCTCTGCTCCTCAAAAGCAGATGCATCTGACTATAGGAAGGCCTGGCTCTTCATCACAGGCTGCTGGCTGTACTCTCTGCTATGGACTGTACCACCGCTCTTAGGCTGGAGCAGCTATGGTCCTGAGGGTCCCGGCACCACCTGTTCAGTCCAGTGGAACAAGCGCTCTCCGGAAACCCGGTCTTACGTCATCTGCCTCTTTGTCTTCTGTCTTCTGCTGCCTCTCCTTCTGATGGTCTACTGCTATGGCAAGATCCTCATTGCCATTCATGGG

Function

symbol description
tmtops3b Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gill; heart; and integument.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-311 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gill; heart; and integument.

Ensembl:

ensembl_id ENSDARG00000090629

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004185 False 1074 mRNA 0.52 4 26689262 26692647
TCONS_00004186 True 613 mRNA 0.51 2 26689327 26690951

Neighbor

gene id symbol gene type direction distance location
XLOC_002171 si:ch73-52f15.5 coding upstream 11276 26667475 ~ 26677986 (+)
XLOC_002170 htatsf1 coding upstream 22019 26652859 ~ 26667243 (+)
XLOC_002169 adgrg4b coding upstream 36669 26645953 ~ 26652593 (+)
XLOC_002168 adgrg4b coding upstream 51769 26634472 ~ 26637493 (+)
XLOC_002167 NA coding upstream 59980 26628793 ~ 26629282 (+)
XLOC_002173 f9b coding downstream 55108 26747755 ~ 26757486 (+)
XLOC_002174 CR545465.1 coding downstream 73738 26766385 ~ 26771677 (+)
XLOC_002175 NA coding downstream 93722 26786369 ~ 26786785 (+)
XLOC_002176 arr3a coding downstream 107566 26800213 ~ 26811397 (+)
XLOC_002177 si:ch211-263p13.7 coding downstream 121063 26813710 ~ 26822190 (+)
XLOC_002164 NA non-coding upstream 124741 26564221 ~ 26564521 (+)
XLOC_002162 BX530069.2 non-coding upstream 382919 26306229 ~ 26306343 (+)
XLOC_002161 NA non-coding upstream 416114 26269060 ~ 26273148 (+)
XLOC_002158 BX530083.1 non-coding upstream 724863 25964284 ~ 25964399 (+)
XLOC_002181 NA non-coding downstream 190055 26882702 ~ 26883139 (+)
XLOC_002190 NA non-coding downstream 369114 27061761 ~ 27064405 (+)
XLOC_002193 NA non-coding downstream 476479 27169126 ~ 27198982 (+)

Expression


Co-expression Network