RNA id: TCONS_00005901


Basic Information

Item Value
RNA id TCONS_00005901
length 3653
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id XLOC_002161
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26269060 ~ 26273148 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGAGACTCAGGTTTGACAAAAgaaatttattatttgatttaaatatgcACAGATGATTGACGCTCTTCTGCTGTCGGAATTTCAGGTTGTTTTCCAGACTGTGAGACAAATAAATGTCACCTTCTAAAAAGAATTGGGTTAAACAGACTTCTAAATATGCCAGGCTCTTCTTTTCCTTTGCATTTGTTGTGGGTGCTAGCAGGGGCCTGTTAAACCTGAGGCAGTGGCGGTATCAGGCACGCACCGGAGGTAGCAAAACATCTCCGGAAATTCATTCAAATGCTTAATTAGCTTTTTACACATAAGATTGCGAGATAAAAAAGCAGGGCACTTCCTCTTAAAGCAGAAATTGTCCACCAGATTTTACAAAAGAGGGTACAATTTCTGTGATTCACCCTGAAAGGCAAATAAACACCATTCCGGAtaatgaggatttttttttttcttaatttaaaatgaaccaaTCGTAAGTTACATAGacaatacaaaacattttattgtcaGAAAAAAGCAGCATAGAAACAGTGTGAGAGAGCTGCTGTTTTGGAAGAAATTAATTTACATACAGAAGAGTCTTTGAGGTTTCACCAATATCCAAAAAGTCATAAACAAACATACGTAATGACATAAGTTTGAGTTTCTACAGAGTTCTCATTGCGGTCTACAAGGTATGACAATAGCAGCTATTTTGGATGAACTTAACATAACACTGGAGTTTCAAAGCTGTTTGAGTCATCAgtataaaaagaaacaaacaaaaagagcagtcaGCATCTTGACTCCCTGGCCAGCCAGTGAGACAAAACAAAGCAATGCGCAAACAACTCTTCACATCAACACTGCGGTGGCTCTGAAGAAGGGTAACGTGGCCGCACAATGTTTGCACCCTTTCCGTTAACAGACACCTGCGTCACCGTCATGGCTGAGACTGATTCTTCATGCTGCATTTTTAAGCGTTAAACATTGCTGAGAGTGACTAATACGTCTTATCAAAAGACAAAATAAGGCCTCCACGGAATGGAGTTAAATGCAGCATTAAATCCTCATCTCAGCCTCATCAGTGTGCTCCAGAGTGTGTTCTGTGGTGCTGATGATGGAGGCTGAGGGACCTTGAGTGACACCGAATGGAGAAACAGCTGGGGACCGTGCAGCAAGTGGGGACAAAGAAGGGGAGAAACTGGGAGACATGGCTGCTGAGGAGATGGAGCCTTCATGGCTTATAGGTGAGCGCCTTAGGGATGCTAAGGTGTGGAACGTCCGTGTTATGGCAGGTTTGGGTGGAACAGATTTGGCCCCCGGATGAGCCACTGAGGTAATGAGAGGTGGAGGGTCAATCCTAGGCTTGGGATCTGTCTTGATTTTGGGTTGGAAAGGTCTCCGTGGGTTGTTAGGAGGTAAACTTTCGTCTTTTAGCCTGGCAATCTCCGTAAAGACACTGGCTAAGGGTTGGAACTGAGGGCACCAGTTGAGAAGATAGTCCCAGTTGTAGCTACCTCGCAATTCCTCATCACTTGCTACTATGGCCGTGAGAGAACCGTCAACCGGGGGTTTGCCATCCTCAGGGAAAGCATAATCTTTCGGATGGGAAATATTCAACCCACGACCTACTCCAAGATAGCCGCCGCCTTCATCTCTGTAGACTGGGAGCTGACCAGAAAGCAGGGTACCACTGAGGCTTCCACTAATGCTCCCCAGTTTCTTACTTTTGAACCACTGGCTTGCATCAAGTGGACCTGGTTCACAAGAAATATCAGAGAGCTGGTCTGCATCTTGCTGGATTCCTGAATCAGGGCCCCTGGCAGAAATGTGCTCTTGCATGGAGGATGTGATGCTTGCCACTCTTGGGTACTCATTGATCATCCGAATTTCATCATCCTCTGCTGCTTCGGCAGATCCCCGTCCACTGGAGTGAGAAGGATCTAGGGATCCTCCTCGAGTGTAAGAGCCTGCACCTGTTCCTTCCTCATCCCCTGCATATCCAGGAAGGGCCTGATGATAGATCCTGTCACTCCCTGAGGGTTTAGATTCATCCAACTTCTGCAGAGCTGTGCCTGAAGATGCAGTACTGTTTCCAGCATCTTGTCCTTTCTTCTTGCGCTTTGATCTTACTAAATAGAGAGCAACAGCTATTATGACTAACAAGACTATTACACCAAGAGAGGCAGCAATTATGCTGACAAGGAGAATGTTAAAGTCTGTTGCAAGACCAAAGGATGTGTTCGTGACATCGATGATGACCTGAGCAGAAGCTACTCTTGAGGTGTCAAGCGGGCTGTGGGCAGAAACATCCATAGTCATTAGGCGGGTTTCCCTCTTTGAACGACTACCACCACTTGAACTGCCAGAGTTGTCCATCTTTAGGTAGATAACGCCAGTGGTCTTATTAACATCAAAGTATGGAGAGGAATTGGGGAAGGAGTAGAGTACAATCCCATCCACCCCACCATCCTCATCTTTGGCCTGTACTAGCCCAATGCTCTGACCTTTCTTGGCTCCCTCAGGAACTTCAAAAGACAAATCTGAAGTGGTAAAAACTGGGTCATACTCATCTTCTCCTGTAATGAAGACCTGCACTGTGACAGTAGCTGAGTTGTTGCCTGCATCCACAGCCAAAGCAATGAAGTTGAACGAGTTCACCTTCTCAAAATCAAATATCTGCTTGGTACGAACTTCTCCTGAGTTCTGATCTACAAAAAAGAGGTCTTTCCCAGGGCTGGAGTGGTCCATCAAATAATACTTCAGTTGCCCATAAACTCCTGTGTCATAATCAATGGCATGTAACACGGTTACAGCAGAGTTAAGAGGCTGGTTTTCACGAATGCTGGCTGTTAATGTAGCAATCGGAAAGTAAGGTCTGTTATCATTGATGTCCTTTACCTCAACACTAATAGGTGCCAAAGCAAATCGACCATGGCCATCTGATGCTTGTACTATTACTACATGGGAATTTTGGCTCTCTCTGTCTAAAGGCCTTTGGAGCTTCATAGCACCAGTCCACTGATCCACAGAGAACAGCTTCATATCATCTCCAGAGCTGATGCTGTACTGGACCTCTGCGTAGGGAGCTGAATCAGGATCCGTTGCAGTCACACGTAAGATTTCTGCACCAGCAGCTGCCCCTTCACTCAAAGCCACTATGTATTCAGCTCTgccaaaaacaggagggttgtcaTTCACATCAGTGACTGTGATGATGGCTGGTACACTGGAGCTCCGTTGGGGAACACCACGATCCGAAACTGAAACGGTGAGGTTATAGTGTGACAATGCTTCAAAATCCAGTCGCTCAGCCAAGATCAGGGTTCCTACAGTCTGGAAGCCATGACCTTCAATGAAACGAACACTGCTCTCAATCTGGAAAGCATTTCCAACATTCCCACTGGCAATTGCAAAATCAAAACCAGAGTTTTCCTGAGACAGGTCTCCATCTACTGCTTCTAAGGTAAGGATGGTGGCTCCAGGTAGCTGGTCCTCAGACACTGTGGCTTTGTACTCCAACTGGTGGAATATGGGGGCGTTGTCATTGACGTCCATCAGTTGAACTTGAACTGTGGCAGATGATGACAGAGGTGGAGACCCTCCATCACGAGCTTCGATGACTATACTGACAGAGGGCTCCTCTGGGTCAAATTTTGCTTTCTGCCTGATGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005900 lncRNA upstream 503489 25762203 ~ 25765571 (+) True XLOC_002156
TCONS_00005899 lncRNA upstream 566653 25687634 ~ 25702407 (+) True XLOC_002154
TCONS_00005898 lncRNA upstream 1433615 24834759 ~ 24835445 (+) True XLOC_002148
TCONS_00005713 lncRNA upstream 1449901 24815304 ~ 24819159 (+) True XLOC_002147
TCONS_00004155 lncRNA upstream 1571080 24694574 ~ 24697980 (+) True XLOC_002146
TCONS_00004172 lncRNA downstream 258729 26531877 ~ 26538637 (+) True XLOC_002163
TCONS_00005714 lncRNA downstream 291073 26564221 ~ 26564521 (+) True XLOC_002164
TCONS_00004176 lncRNA downstream 339173 26612321 ~ 26617605 (+) False XLOC_002166
TCONS_00005715 lncRNA downstream 355645 26628793 ~ 26629282 (+) True XLOC_002167
TCONS_00004188 lncRNA downstream 493237 26766385 ~ 26771677 (+) True XLOC_002174
TCONS_00004169 mRNA upstream 140881 26118122 ~ 26128179 (+) True XLOC_002160
TCONS_00004167 mRNA upstream 152424 25982212 ~ 26116636 (+) False XLOC_002159
TCONS_00004168 mRNA upstream 156931 25982330 ~ 26112129 (+) True XLOC_002159
TCONS_00004164 mRNA upstream 307002 25947946 ~ 25962058 (+) False XLOC_002157
TCONS_00004163 mRNA upstream 540316 25726694 ~ 25728744 (+) True XLOC_002155
TCONS_00004171 mRNA downstream 242798 26515946 ~ 26569350 (+) False XLOC_002163
TCONS_00004173 mRNA downstream 298026 26571174 ~ 26589086 (+) False XLOC_002165
TCONS_00004174 mRNA downstream 298045 26571193 ~ 26597800 (+) True XLOC_002165
TCONS_00004175 mRNA downstream 324842 26597990 ~ 26621189 (+) False XLOC_002166
TCONS_00004177 mRNA downstream 339173 26612321 ~ 26620946 (+) True XLOC_002166
TCONS_00004166 other upstream 304661 25964284 ~ 25964399 (+) True XLOC_002158
TCONS_00004165 other upstream 308312 25948242 ~ 25960748 (+) True XLOC_002157
TCONS_00004149 other upstream 1596131 24668774 ~ 24672929 (+) False XLOC_002143
TCONS_00004147 other upstream 1604611 24660142 ~ 24664449 (+) False XLOC_002143
TCONS_00004134 other upstream 1826702 24422231 ~ 24442358 (+) False XLOC_002140
TCONS_00004170 other downstream 33081 26306229 ~ 26306343 (+) True XLOC_002162
TCONS_00004210 other downstream 790026 27063174 ~ 27063257 (+) False XLOC_002190
TCONS_00004211 other downstream 790206 27063354 ~ 27063438 (+) True XLOC_002190
TCONS_00004216 other downstream 1887149 28160297 ~ 28162247 (+) True XLOC_002194
TCONS_00004217 other downstream 1979530 28252678 ~ 28252795 (+) True XLOC_002196

Expression Profile

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