RNA id: TCONS_00005898


Basic Information

Item Value
RNA id TCONS_00005898
length 595
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_002148
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24834759 ~ 24835445 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATGTGCTTTTGTAGTGTTCTTCTCCTGCACAACAGAGAAGAGACGCAGTGGGAAGGCAGCTGATACGCATCTCCACACATAACTCCCCTGGAGCGAgTTCATCATCTTTTCATGTACCCTGATGAACAACTGCTTTTTCATCTTTCTAATATGAAGCATAGCGTCTGCAGAATGAATAGAAAATATGTCACTCCACAGCATTACATTTAGGTTGGCGTGCCTTTCCAACATGCCTTTAATCTATATAAAACAGTGCAGGGGTGTTCAACCTTGTTTTTGAAGTGCAGACATCCTGGGAGTTtatcttcaacacacctgcctaaaAGTTTTGAACCGAGGTCCTGAAAACCTTGATTAGCGGTTTCAGATGTGATGAaacagggttggagctgaactctgcaggataACGCCCCTTCATAAGCATGCTGTGGACCATGAGGGGAGCAGTCTTTCTTATCAGCAGATTCAGACGGGCTGCACTAGAACATCCTCTCCTGATGACTGTGACAATGTCTATAATGCGAGACATTCATAAGTTATCATGTTGCCACCACACCAACATAAAGAATATGACGTCCTGGAGATCACACAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005713 lncRNA upstream 15600 24815304 ~ 24819159 (+) True XLOC_002147
TCONS_00004155 lncRNA upstream 136779 24694574 ~ 24697980 (+) True XLOC_002146
TCONS_00004153 lncRNA upstream 142351 24690611 ~ 24692408 (+) False XLOC_002146
TCONS_00005897 lncRNA upstream 179575 24650863 ~ 24655184 (+) True XLOC_002144
TCONS_00005712 lncRNA upstream 388767 24439620 ~ 24445992 (+) False XLOC_002140
TCONS_00005899 lncRNA downstream 852189 25687634 ~ 25702407 (+) True XLOC_002154
TCONS_00005900 lncRNA downstream 926758 25762203 ~ 25765571 (+) True XLOC_002156
TCONS_00005901 lncRNA downstream 1433615 26269060 ~ 26273148 (+) True XLOC_002161
TCONS_00004172 lncRNA downstream 1696432 26531877 ~ 26538637 (+) True XLOC_002163
TCONS_00005714 lncRNA downstream 1728776 26564221 ~ 26564521 (+) True XLOC_002164
TCONS_00004152 mRNA upstream 126803 24690534 ~ 24707956 (+) False XLOC_002146
TCONS_00004154 mRNA upstream 127231 24692076 ~ 24707528 (+) False XLOC_002146
TCONS_00004151 mRNA upstream 148256 24684799 ~ 24686503 (+) True XLOC_002145
TCONS_00004150 mRNA upstream 150989 24678092 ~ 24683770 (+) True XLOC_002143
TCONS_00004148 mRNA upstream 154334 24660225 ~ 24680425 (+) False XLOC_002143
TCONS_00004156 mRNA downstream 369181 25204626 ~ 25213025 (+) True XLOC_002149
TCONS_00004157 mRNA downstream 384283 25219728 ~ 25272236 (+) False XLOC_002150
TCONS_00004158 mRNA downstream 386922 25222367 ~ 25268326 (+) True XLOC_002150
TCONS_00004159 mRNA downstream 436910 25272355 ~ 25283609 (+) True XLOC_002151
TCONS_00004160 mRNA downstream 519863 25355308 ~ 25369173 (+) True XLOC_002152
TCONS_00004149 other upstream 161830 24668774 ~ 24672929 (+) False XLOC_002143
TCONS_00004147 other upstream 170310 24660142 ~ 24664449 (+) False XLOC_002143
TCONS_00004134 other upstream 392401 24422231 ~ 24442358 (+) False XLOC_002140
TCONS_00004135 other upstream 399320 24426929 ~ 24435439 (+) False XLOC_002140
TCONS_00004130 other upstream 480893 24353750 ~ 24353866 (+) True XLOC_002137
TCONS_00004165 other downstream 1112797 25948242 ~ 25960748 (+) True XLOC_002157
TCONS_00004166 other downstream 1128839 25964284 ~ 25964399 (+) True XLOC_002158
TCONS_00004170 other downstream 1470784 26306229 ~ 26306343 (+) True XLOC_002162
TCONS_00004210 other downstream 2227729 27063174 ~ 27063257 (+) False XLOC_002190
TCONS_00004211 other downstream 2227909 27063354 ~ 27063438 (+) True XLOC_002190

Expression Profile

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