Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004155 |
| length | 538 |
| lncRNA type | retained_intron |
| GC content | 0.45 |
| exon number | 5 |
| gene id | XLOC_002146 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 24690534 ~ 24707956 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046856 | phosphatidylinositol dephosphorylation | biological_process |
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0048870 | cell motility | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0008285 | negative regulation of cell population proliferation | biological_process |
| GO:0051896 | regulation of protein kinase B signaling | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0014065 | phosphatidylinositol 3-kinase signaling | biological_process |
| GO:0016311 | dephosphorylation | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | molecular_function |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0016314 | phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity | molecular_function |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| id | description |
|---|---|
| ko01009 | Protein phosphatases and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-030131-5503 | Enables ion channel activity and phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity. Acts upstream of or within phosphatidylinositol dephosphorylation. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including cytosol; nucleus; and plasma membrane. Is expressed in blood vessel; pleuroperitoneal region; and ventral mesoderm. Orthologous to several human genes including TPTE2 (transmembrane phosphoinositide 3-phosphatase and tensin homolog 2). |
| ensembl_id | ENSDART00000139930 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00004153 | lncRNA | upstream | 2166 | 24690611 ~ 24692408 (+) | False | XLOC_002146 |
| TCONS_00005897 | lncRNA | upstream | 39390 | 24650863 ~ 24655184 (+) | True | XLOC_002144 |
| TCONS_00005712 | lncRNA | upstream | 248582 | 24439620 ~ 24445992 (+) | False | XLOC_002140 |
| TCONS_00004136 | lncRNA | upstream | 258848 | 24429129 ~ 24435726 (+) | False | XLOC_002140 |
| TCONS_00005895 | lncRNA | upstream | 282549 | 24404690 ~ 24412025 (+) | False | XLOC_002139 |
| TCONS_00005713 | lncRNA | downstream | 117324 | 24815304 ~ 24819159 (+) | True | XLOC_002147 |
| TCONS_00005898 | lncRNA | downstream | 136779 | 24834759 ~ 24835445 (+) | True | XLOC_002148 |
| TCONS_00005899 | lncRNA | downstream | 989654 | 25687634 ~ 25702407 (+) | True | XLOC_002154 |
| TCONS_00005900 | lncRNA | downstream | 1064223 | 25762203 ~ 25765571 (+) | True | XLOC_002156 |
| TCONS_00005901 | lncRNA | downstream | 1571080 | 26269060 ~ 26273148 (+) | True | XLOC_002161 |
| TCONS_00004151 | mRNA | upstream | 8071 | 24684799 ~ 24686503 (+) | True | XLOC_002145 |
| TCONS_00004150 | mRNA | upstream | 10804 | 24678092 ~ 24683770 (+) | True | XLOC_002143 |
| TCONS_00004148 | mRNA | upstream | 14149 | 24660225 ~ 24680425 (+) | False | XLOC_002143 |
| TCONS_00004146 | mRNA | upstream | 17160 | 24660017 ~ 24677414 (+) | False | XLOC_002143 |
| TCONS_00004145 | mRNA | upstream | 31845 | 24643081 ~ 24662729 (+) | False | XLOC_002143 |
| TCONS_00004156 | mRNA | downstream | 506646 | 25204626 ~ 25213025 (+) | True | XLOC_002149 |
| TCONS_00004157 | mRNA | downstream | 521748 | 25219728 ~ 25272236 (+) | False | XLOC_002150 |
| TCONS_00004158 | mRNA | downstream | 524387 | 25222367 ~ 25268326 (+) | True | XLOC_002150 |
| TCONS_00004159 | mRNA | downstream | 574375 | 25272355 ~ 25283609 (+) | True | XLOC_002151 |
| TCONS_00004160 | mRNA | downstream | 657328 | 25355308 ~ 25369173 (+) | True | XLOC_002152 |
| TCONS_00004149 | other | upstream | 21645 | 24668774 ~ 24672929 (+) | False | XLOC_002143 |
| TCONS_00004147 | other | upstream | 30125 | 24660142 ~ 24664449 (+) | False | XLOC_002143 |
| TCONS_00004134 | other | upstream | 252216 | 24422231 ~ 24442358 (+) | False | XLOC_002140 |
| TCONS_00004135 | other | upstream | 259135 | 24426929 ~ 24435439 (+) | False | XLOC_002140 |
| TCONS_00004130 | other | upstream | 340708 | 24353750 ~ 24353866 (+) | True | XLOC_002137 |
| TCONS_00004165 | other | downstream | 1250262 | 25948242 ~ 25960748 (+) | True | XLOC_002157 |
| TCONS_00004166 | other | downstream | 1266304 | 25964284 ~ 25964399 (+) | True | XLOC_002158 |
| TCONS_00004170 | other | downstream | 1608249 | 26306229 ~ 26306343 (+) | True | XLOC_002162 |
| TCONS_00004210 | other | downstream | 2365194 | 27063174 ~ 27063257 (+) | False | XLOC_002190 |
| TCONS_00004211 | other | downstream | 2365374 | 27063354 ~ 27063438 (+) | True | XLOC_002190 |
