LOC110519939 (LOC106604981)


Basic Information

Item Value
gene id LOC110519939
gene name LOC106604981
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37428004 ~ 37489579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472909.2
CCGTCCTTATAGTCTATGTAGACCAAGTCTATGGCTTGTAGACCGAAGGCCTTGGTTGTCACTACCACCTTCTGACGGGCATACAGCAGCTCCCTGGCATCCTTGGTCCGCGTGGCACCTGGACGGAGGGAGACACAGcatcagtagaacacgcctgactctcctccaccagtcatacaaggagaatggtctaatgtctcccatcaaaaagagagctggcccaagcaagcaCGTTACACCTGAAGCATGAGGACTTGCAACGACAACTACGCAGAGGATAATACAATAGTATTACCAGGACGCCACCCAGGACACAAACACTTTGGTGGAAAGCTCCTGCCATCCCATGTGACAAAAGCAGCAGTGTGGCGTCTCTACAAGGAATCAATGACAACACTTGGAATCTGTGGAGATTCCTGAAGCACTAAGCCCAGGACAGACCTGTGTTGCCAATGCCAGAGGAACAACTAAGGTCTTCAGATTTGCAAATCTGTCAGAAGCTGTTAAGTCAGCCAAGCTGAAAAAGCACAAGCTCCCCTACAgtctggaccttcacttcctgatcacaggccacaccaagtttGCCCCTGACTGGAGATTCGGCCTCATAAAGCAGAGCTTCAGAAAGACCATAGtgaacactttgtctgagattgctggtgttgtgaaggacagcactgtgacagggctcaacatcccacagctggttggactggaggatggtacggtgctggtggaaagctatggctggcaacacCAGACTCCGTACTTCAGGGCActgccacagatcaagcagtaccagGACTTCAGGCGGATAACATTTTCATTGCAATCTTCaatgctctggagcctggtgttgttaTCGCCATGGAGCGTTCGGACTGTCGGGACCAGGCTTCAGCTGCTGCTCAAtgctgacatccttcctcccatagatgaTCTGCCTGTACAAGAaacacctggactggacacagctagagAAACTTATCtttttgagaagatcagggagttttgcgATGAAGAGGCTgtggacatcacatgccctgcaccaaagtcaagggcaggacagaaacaggctctctgaatatagattcccttgttcatgcATGGTTCGGACGAaccagtcatcagcactatctgcagtgcctctattcacATGACTCTACGTTGTTGCTACTATTTTATTTATCCCGCTTCTCAGCCACTTTACCTCTGATGTGTGCATTTAACTACCTCGTCTATCACTGATATCattattgatattgttcttgtacatactgtatattattttatatatattgacaCTATATgtttctgatattgctactatgcaagtaaccatttctctgtactgtttacaccttctgtgACCCATCCACTTGGCAATATGTGGCTGGGGTTatagctgtcacgccctggtcttagtattttctttattattttgatcaggccagggtgtgacatgggttattttatgtggtgtgttttgtctaggggtttgttgtaggttatgggat
>XR_002472908.2
taacatgaagtcctatgagtgtcatctgatgatcatcaaaggttagtgattcattttagctatatttctgctttttgtgactcctctctttggctgtaaaaatggctgtgtttttatcTGACTTGGAATGTCTGGTAGAGGCAGAGTATGATAAGGAGATTAATAGaattctggcgtttgattgcaaatgcatagggagtcgaaaagagaacacagaaggttGTTGTATAAAAAACCTGTCTCTGgaatacatcttcaaactaagggcatccgtgacagagagggagaaagagagggagaaagatctgATGAATCTTATGGCATTGCAaacggtcagtgtgaaccagagtgaccAAACAAGCTGTATAAACAAAATGGAAACGACACAGGATgtcttatttaatgaaaggggttgcagtctgccctgaagctttcatccatgtatatgggtaagaatctagctacagtttcagatattatacgtttctaattttgtcagaaagttgttttcattgcaagttaaggcttgctgttagctagctagctgacattgGATGGCTTGCTAGCCATCATTACGTGTATGAACTGTGTAGTGATGttatctcagaatgccattttgcattgctagttataggataatgttagctagctaactagctaacattgaacctgtttGGTTTAGCGAGCTATGACAAttggtttgtattgctagtaatctatggattgggattatggttcattgtttagctagctagctacatgtctaaacaaaatacctTGAGTTAAAGCttgcagttagctagctagctgacgacccatcaagttagccaggtgtgtctgacaGTGATTACGACCATCTATTTTATTATAATGcaaaaatatttgtatctggaatttgtctttcagcatcagtagaacacgcctgactctcctccaccagtcatacaaggagaatggtctaatgtctcccatcaaaaagagagctggcccaagcaagcaCGTTACACCTGAAGCATGAGGACTTGCAACGACAACTACGCAGAGGATAATACAATAGTATTACCAGGACGCCACCCAGGACACAAACACTTTGGTGGAAAGCTCCTGCCATCCCATGTGACAAAAGCAGCAGTGTGGCGTCTCTACAAGGAATCAATGACAACACTTGGAATCTGTGGAGATTCCTGAAGCACTAAGCCCAGGACAGACCTGTGTTGCCAATGCCAGAGGAACAACTAAGGTCTTCAGATTTGCAAATCTGTCAGAAGCTGTTAAGTCAGCCAAGCTGAAAAAGCACAAGCTCCCCTACAgtctggaccttcacttcctgatcacaggccacaccaagtttGCCCCTGACTGGAGATTCGGCCTCATAAAGCAGAGCTTCAGAAAGACCATAGtgaacactttgtctgagattgctggtgttgtgaaggacagcactgtgacagggctcaacatcccacagctggttggactggaggatggtacggtgctggtggaaagctatggctggcaacacCAGACTCCGTACTTCAGGGCActgccacagatcaagcagtaccagGACTTCAGGCGGATAACATTTTCATTGCAATCTTCaatgctctggagcctggtgttgttaTCGCCATGGAGCGTTCGGACTGTCGGGACCAGGCTTCAGCTGCTGCTCAAtgctgacatccttcctcccatagatgaTCTGCCTGTACAAGAaacacctggactggacacagctagagAAACTTATCtttttgagaagatcagggagttttgcgATGAAGAGGCTgtggacatcacatgccctgcaccaaagtcaagggcaggacagaaacaggctctctgaatatagattcccttgttcatgcATGGTTCGGACGAaccagtcatcagcactatctgcagtgcctctattcacATGACTCTACGTTGTTGCTACTATTTTATTTATCCCGCTTCTCAGCCACTTTACCTCTGATGTGTGCATTTAACTACCTCGTCTATCACTGATATCattattgatattgttcttgtacatactgtatattattttatatatattgacaCTATATgtttctgatattgctactatgcaagtaaccatttctctgtactgtttacaccttctgtgACCCATCCACTTGGCAATATGTGGCTGGGGTTatagctgtcacgccctggtcttagtattttctttattattttgatcaggccagggtgtgacatgggttattttatgtggtgtgttttgtctaggggtttgttgtaggttatgggatagtggtta
>TU288289
TGCCAAACTCTTCCTAGCACCCTACCTGGCTAGTATCTTAAGTTACATGAATAAGTGAGAAAACAGTAGAATCCAGTTGCAGTTGAACATCCTACATCACCCGGTCAGCTCCCACCTTCCAAACCGCCAAAGATTTATCGAGACAGCGGACATAGGCTATTTTTTCTGCTCAGCGCACAcatcagtagaacacgcctgactctcctccaccagtcatacaaggagaatggtctaatgtctcccatcaaaaagagagctggcccaagcaagcaCGTTACACCTGAAGCATGAGGACTTGCAACGACAACTACGCAGAGGATAATACAATAGTATTACCAGGACGCCACCCAGGACACAAACACTTTGGTGGAAAGCTCCTGCCATCCCATGTGACAAAAGCAGCAGTGTGGCGTCTCTACAAGGAATCAATGACAACACTTGGAATCTGTGGAGATTCCTGAAGCACTAAGCCCAGGACAGACCTGTGTTGCCAATGCCAGAGGAACAACTAAGGTCTTCAGATTTGCAAATCTGTCAGAAGCTGTTAAGTCAGCCAAGCTGAAAAAGCACAAGCTCCCCTACAgtctggaccttcacttcctgatcacaggccacaccaagtttGCCCCTGACTGGAGATTCGGCCTCATAAAGCAGAGCTTCAGAAAGACCATAGtgaacactttgtctgagattgctggtgttgtgaaggacagcactgtgacagggctcaacatcccacagctggttggactggaggatggtacggtgctggtggaaagctatggctggcaacacCAGACTCCGTACTTCAGGGCActgccacagatcaagcagtaccagGACTTCAGGCGGATAACATTTTCATTGCAATCTTCaatgctctggagcctggtgttgttaTCGCCATGGAGCGTTCGGACTGTCGGGACCAGGCTTCAGCTGCTGCTCAAtgctgacatccttcctcccatagatgaTCTGCCTGTACAAGAaacacctggactggacacagctagagAAACTTATCtttttgagaagatcagggagttttgcgATGAAGAGGCTgtggacatcacatgccctgcaccaaagtcaagggcaggacagaaacaggctctctgaatatagattcccttgttcatgcATGGTTCGGACGAaccagtcatcagcactatctgcagtgcctctattcacATGACTCTACGTTGTTGCTACTATTTTATTTATCCCGCTTCTCAGCCACTTTACCTCTGATGTGTGCATTTAACTACCTCGTCTATCACTGATATCattattgatattgttcttgtacatactgtatattattttatatatattgacaCTATATgtttctgatattgctactatgcaagtaaccatttctctgtactgtttacaccttctgtgACCCATCCACTTGGCAATATGTGGCTGGGGTTatagctgtcacgccctggtcttagtattttctttattattttgatcaggccagggtgtgacatgggttattttatgtggtgtgttttgtctaggggtttgttgtaggttatgggatagtggttagtggggttg

Function

NR:

description
PREDICTED: uncharacterized protein LOC109090899

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472909.2 False 1517 mRNA 0.47 4 37485583 37489562
XR_002472908.2 False 2293 mRNA 0.43 3 37487082 37489570
TU288289 True 1575 lncRNA 0.46 4 37428004 37489579

Neighbor

gene id symbol gene type direction distance location
LOC110519936 LOC106586041 coding upstream 61247 37419106 ~ 37424336 (+)
LOC110519932 LOC106591969 coding upstream 826030 36657467 ~ 36659553 (+)
rcc1 rcc1 coding upstream 1098367 36381470 ~ 36387216 (+)
phactr4b LOC106584362 coding upstream 1117267 36317313 ~ 36368316 (+)
LOC110519762 LOC106584688 coding upstream 1184014 36293824 ~ 36301569 (+)
si:ch211-184m13.4 LOC106586045 coding downstream 199218 37688788 ~ 37691898 (+)
LOC110519942 LOC106586050 coding downstream 259125 37748695 ~ 37756709 (+)
LOC110519944 LOC106586047 coding downstream 744773 38234343 ~ 38250022 (+)
LOC110519946 NA coding downstream 1146376 38635946 ~ 38760490 (+)
LOC110519950 LOC106586053 coding downstream 1682327 39171897 ~ 39214104 (+)
G252894 NA non-coding upstream 87164 37398220 ~ 37398419 (+)
G252891 NA non-coding upstream 89862 37395515 ~ 37395721 (+)
G252866 NA non-coding upstream 100778 37384600 ~ 37384805 (+)
G252828 NA non-coding upstream 111844 37373322 ~ 37373739 (+)
G252825 NA non-coding upstream 117686 37367555 ~ 37367897 (+)
G253022 NA non-coding downstream 148743 37638313 ~ 37638677 (+)
G253305 NA non-coding downstream 239435 37729005 ~ 37752270 (+)
G253313 NA non-coding downstream 254395 37743965 ~ 37744432 (+)
G253316 NA non-coding downstream 271216 37760786 ~ 37761394 (+)
G251845 zdhhc18 other upstream 858041 36623610 ~ 36627542 (+)
G251773 NA other upstream 960410 36511574 ~ 36579307 (+)
LOC110519579 gmeb1 other upstream 2264211 35203647 ~ 35221874 (+)
rab42b rab42 other upstream 2312120 35153546 ~ 35173463 (+)
G249323 NA other upstream 3064971 34419890 ~ 34420612 (+)
G253299 NA other downstream 237378 37726948 ~ 37727338 (+)
G253834 LOC100136012 other downstream 602752 38092322 ~ 38092734 (+)
G254204 NA other downstream 951596 38441166 ~ 38441734 (+)
G254445 NA other downstream 1110917 38600487 ~ 38600866 (+)
G254816 NA other downstream 1353940 38843510 ~ 38844556 (+)

Expression


Co-expression Network