RNA id: XR_002472909.2


Basic Information

Item Value
RNA id XR_002472909.2
length 1517
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110519939
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37428004 ~ 37489579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTCCTTATAGTCTATGTAGACCAAGTCTATGGCTTGTAGACCGAAGGCCTTGGTTGTCACTACCACCTTCTGACGGGCATACAGCAGCTCCCTGGCATCCTTGGTCCGCGTGGCACCTGGACGGAGGGAGACACAGcatcagtagaacacgcctgactctcctccaccagtcatacaaggagaatggtctaatgtctcccatcaaaaagagagctggcccaagcaagcaCGTTACACCTGAAGCATGAGGACTTGCAACGACAACTACGCAGAGGATAATACAATAGTATTACCAGGACGCCACCCAGGACACAAACACTTTGGTGGAAAGCTCCTGCCATCCCATGTGACAAAAGCAGCAGTGTGGCGTCTCTACAAGGAATCAATGACAACACTTGGAATCTGTGGAGATTCCTGAAGCACTAAGCCCAGGACAGACCTGTGTTGCCAATGCCAGAGGAACAACTAAGGTCTTCAGATTTGCAAATCTGTCAGAAGCTGTTAAGTCAGCCAAGCTGAAAAAGCACAAGCTCCCCTACAgtctggaccttcacttcctgatcacaggccacaccaagtttGCCCCTGACTGGAGATTCGGCCTCATAAAGCAGAGCTTCAGAAAGACCATAGtgaacactttgtctgagattgctggtgttgtgaaggacagcactgtgacagggctcaacatcccacagctggttggactggaggatggtacggtgctggtggaaagctatggctggcaacacCAGACTCCGTACTTCAGGGCActgccacagatcaagcagtaccagGACTTCAGGCGGATAACATTTTCATTGCAATCTTCaatgctctggagcctggtgttgttaTCGCCATGGAGCGTTCGGACTGTCGGGACCAGGCTTCAGCTGCTGCTCAAtgctgacatccttcctcccatagatgaTCTGCCTGTACAAGAaacacctggactggacacagctagagAAACTTATCtttttgagaagatcagggagttttgcgATGAAGAGGCTgtggacatcacatgccctgcaccaaagtcaagggcaggacagaaacaggctctctgaatatagattcccttgttcatgcATGGTTCGGACGAaccagtcatcagcactatctgcagtgcctctattcacATGACTCTACGTTGTTGCTACTATTTTATTTATCCCGCTTCTCAGCCACTTTACCTCTGATGTGTGCATTTAACTACCTCGTCTATCACTGATATCattattgatattgttcttgtacatactgtatattattttatatatattgacaCTATATgtttctgatattgctactatgcaagtaaccatttctctgtactgtttacaccttctgtgACCCATCCACTTGGCAATATGTGGCTGGGGTTatagctgtcacgccctggtcttagtattttctttattattttgatcaggccagggtgtgacatgggttattttatgtggtgtgttttgtctaggggtttgttgtaggttatgggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU288298 lncRNA upstream 87164 37398220 ~ 37398419 (+) True G252894
TU288295 lncRNA upstream 89862 37395515 ~ 37395721 (+) True G252891
TU288266 lncRNA upstream 100778 37384600 ~ 37384805 (+) True G252866
TU288226 lncRNA upstream 111844 37373322 ~ 37373739 (+) True G252828
TU288223 lncRNA upstream 117686 37367555 ~ 37367897 (+) True G252825
TU288427 lncRNA downstream 148751 37638313 ~ 37638677 (+) True G253022
TU288728 lncRNA downstream 239443 37729005 ~ 37752270 (+) True G253305
TU288736 lncRNA downstream 254403 37743965 ~ 37744432 (+) True G253313
TU288725 lncRNA downstream 259246 37748808 ~ 37756709 (+) True LOC110519942
TU288739 lncRNA downstream 271224 37760786 ~ 37761394 (+) True G253316
XM_021596823.2 mRNA upstream 61247 37419106 ~ 37424336 (+) True LOC110519936
XR_005044177.1 mRNA upstream 826030 36657467 ~ 36659553 (+) True LOC110519932
XM_021596759.2 mRNA upstream 1098367 36381470 ~ 36387216 (+) False rcc1
XM_021596753.2 mRNA upstream 1098367 36381471 ~ 36387216 (+) False rcc1
XM_021596757.2 mRNA upstream 1098367 36381471 ~ 36387216 (+) True rcc1
XM_021596827.2 mRNA downstream 199226 37688788 ~ 37691898 (+) True si:ch211-184m13.4
XM_021596828.2 mRNA downstream 259133 37748695 ~ 37755452 (+) False LOC110519942
XM_021596833.2 mRNA downstream 744781 38234343 ~ 38250022 (+) False LOC110519944
XM_021596834.2 mRNA downstream 744781 38234343 ~ 38250022 (+) False LOC110519944
XM_021596835.2 mRNA downstream 744781 38234343 ~ 38250022 (+) True LOC110519944
TU287145 other upstream 858041 36623610 ~ 36627542 (+) True G251845
TU287065 other upstream 960410 36511574 ~ 36525173 (+) True G251773
TU285526 other upstream 2264211 35219832 ~ 35221372 (+) True LOC110519579
TU285376 other upstream 2312120 35153702 ~ 35173463 (+) True rab42b
TU284433 other upstream 3064971 34419890 ~ 34420612 (+) True G249323
TU288722 other downstream 237386 37726948 ~ 37727338 (+) True G253299
TU289268 other downstream 602760 38092322 ~ 38092734 (+) True G253834
TU289648 other downstream 951604 38441166 ~ 38441734 (+) True G254204
TU289899 other downstream 1110925 38600487 ~ 38600866 (+) True G254445
TU290310 other downstream 1353948 38843510 ~ 38844556 (+) True G254816

Expression Profile