RNA id: XM_021596828.2


Basic Information

Item Value
RNA id XM_021596828.2
length 2580
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110519942
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37748695 ~ 37756709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACTCAAGAGCATAAACAGTAACACAGGATATTTTGATGTCACTATGGTTACGAAAGCCAGCCCGCCACTCAATCTTAGTTCTCTATTTGTCACTATGTGTCACTCTGCTCTAAAAGCCTGGGGCAACGTGGTCTTTGCTGAACTCTGAGAGAACAATTATAGTCTCATGCCAAGGAGGAACTATCCTGCTTAACTCTCATACTTTGGGAGAATACAGAAATACAGTTGATTTTGCTAGCTTCACAATAGCCACTAGCCCAATGATGGAGGTGATGAGGACCTCCAGCCATGCAAACCCAACCCCTACCCCCACCCTCAATGACTCAAACACCTGCACGACACTGTATGACCACCTGGAGTACGCCCGAGTCCTCATGCCCCTCTTCTACAGCATCGTCTTCTCCGTGGGGTTGCTGGGCAACGCCCTGGCGCTGCATGTCATCCGGCCCAACCTAAAGAAGATGAACTCCACCACGCTCTACTCCGCCAACCTGGTCATCTCTGACATCCTGTTCACACTGTCACTACCATTACGGATAATCTACTACGCCCTGGGCTTCCACTGGCCTCTGGGGGAGTCCCTGTGTAAGATCACAGGGCTGATCTTCTACATCAACACGTATGCCGGGGTCAACTTTATGACCTGCCTCAGTGTGGACCGATTCATTGCTGTGGTCTTGCCGCTCCGGTTCGCACGCTTCCGGAAGGTCTCCAATGTCCGGTTCATCTGCGTTGGGGTGTGGTTGCTGGTCTTAATGCAAACTTTGCCCCTCCTCTCCATGCCCATGACTAATGTGGAGTCTGATGGCTTCATCACTTGTATGGAGTATCCTAACTTTGAACAGGTGCCCAACATCGCCTACATGCTGATCGGCGCCGTGTTCCTAGGCTATGGAGTCCCCGTGGTGACTATCTTATTGTGCTACTCCATACTGTGCTGTAAACTCCGCCTCTCTGCAAAGACCAATCACTTAACAGACAAGTCGGGGCGCAGCCGCAAAGCCGTTGGGGTGATCTGCTGCGTCTCCCTGGTGTTTGTGGTGTGTTTCAGCCCCTACCACATCAACCTCCTCCAATACATGATCCGAAAGCTGATCTATGAAACAGACTGTGCTGAACTCACTGCCTTCCAGATCTCCTTACACTTCACTGTTTGTCTGATGAACCTTAACTCCTGCCTGGATCCATTTATCTACTTCTTTGCCTGTAAGGGTTACAAGAGGAAGGTGCTGAAGATCCTGAAGAGGCAGGTGAGCGTGTCCTTCTCCAGCGCAGTACGGACATCGCCCGAGGGTTCATCCAGAGATGTCGTAGATGGTAAGAAGATCCACCTCAACAGCACTAGATACGAACAGTGTGTCCAACAGAATGGCCAAAGGTGAGTGACAACCAATCAACAGACCGGTGAGTCAAAGACCAACCAACAGATCGGAGAGCCATCAACCAGAAAACAGACCAGCCAACAGACCGGTGAGCCCACGACCAGCCAACAAACCTTTGAGCCAGCGACCAGCTGACAGACTGGTTAGTCAATGACCAGGAAACAGACTGGTATGCAAACAACCAGCAAACTATTTGAATAACATACTATATGTTATTATTTTGAAAAACACATGATATGTTATGATTTCTAGCTAGGtgtctaatgttagctaggtggctaatgttagctactgtaggctaagggttaaggttaggggttaaggttagggttacatttaggagttaggttaaagggttcaggttaggggaagggttagctaccatgctaagtagttgcaaagtagctaaaaagtagtaagtagttgaaagttgctaattagctaaaatgcttatccgttgtccatgatgagatttgaactcgcaaccttttgATTGTTAGACATTTACGTCAGTAAATTGCAAGAGGATGTCTGAGGAGATAGACTGAACTATAACTGTATAACTGATTAACAGTTTAAAGAGGTATCTCACGTCCTCTGGAAATAGAGCCACTTAGGACAGCCAAGGTAACAAACTGTTTCTGCCTCTTGCCAATACAGTAGTGCTGAGTGATTCAccgtaaaaaaaaatatcccttgTTTACCAACATCctttcaattatttgaattccatataGTTCTGCTTTTTTTGTGAGCTCAACGTGctgtttctctagagagaaattCAATCATTAATGAGAGAAACGTTGTCAATGGGCGCATTTGAGCGGATCACTTTTGTCAAGTCGATGACCATTGTTGCGCCTACGTGTCGACTGCATATACTTTACAAACTACCATGACTTCAGTCTGCAGCCATCACCTGCATTGTGGGAGGATCTATTGTCATTGACTCACACAAACGTGACCAAAGACATGATTGAAATAGGAACAAATTTTGATACGATTCATGTATACAGTTGAGTAATTCAAATGAATTTGATATTTGAGGCTGTTTCTCACTGATTGCAGTTTATAATTGTTGAAATAAACATGGCTCCAATCCCcagaacacacactcacaaagaaAAACTTTTATTAACAATGGCAGcactgccatgttgatctgagccttgctgttggaaaaccacattaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU288736 lncRNA upstream 4263 37743965 ~ 37744432 (+) True G253313
TU288427 lncRNA upstream 110018 37638313 ~ 37638677 (+) True G253022
TU288289 lncRNA upstream 259116 37428004 ~ 37489579 (+) True LOC110519939
TU288298 lncRNA upstream 350276 37398220 ~ 37398419 (+) True G252894
TU288295 lncRNA upstream 352974 37395515 ~ 37395721 (+) True G252891
TU288739 lncRNA downstream 5334 37760786 ~ 37761394 (+) True G253316
TU288816 lncRNA downstream 47156 37802608 ~ 37802882 (+) True G253392
TU288817 lncRNA downstream 47482 37802934 ~ 37803493 (+) True G253393
TU288836 lncRNA downstream 59305 37814757 ~ 37816542 (+) True G253412
TU288844 lncRNA downstream 68962 37824414 ~ 37841104 (+) True G253418
XM_021596827.2 mRNA upstream 56797 37688788 ~ 37691898 (+) True si:ch211-184m13.4
XR_002472908.2 mRNA upstream 259125 37487082 ~ 37489570 (+) False LOC110519939
XR_002472909.2 mRNA upstream 259133 37485583 ~ 37489562 (+) False LOC110519939
XM_021596823.2 mRNA upstream 324359 37419106 ~ 37424336 (+) True LOC110519936
XR_005044177.1 mRNA upstream 1089142 36657467 ~ 36659553 (+) True LOC110519932
XM_021596833.2 mRNA downstream 478891 38234343 ~ 38250022 (+) False LOC110519944
XM_021596834.2 mRNA downstream 478891 38234343 ~ 38250022 (+) False LOC110519944
XM_021596835.2 mRNA downstream 478891 38234343 ~ 38250022 (+) True LOC110519944
XM_036974005.1 mRNA downstream 880494 38635946 ~ 38760490 (+) False LOC110519946
XM_036974016.1 mRNA downstream 890844 38646296 ~ 38760490 (+) False LOC110519946
TU288722 other upstream 21357 37726948 ~ 37727338 (+) True G253299
TU287145 other upstream 1121153 36623610 ~ 36627542 (+) True G251845
TU287065 other upstream 1223522 36511574 ~ 36525173 (+) True G251773
TU285526 other upstream 2527323 35219832 ~ 35221372 (+) True LOC110519579
TU285376 other upstream 2575232 35153702 ~ 35173463 (+) True rab42b
TU289268 other downstream 336870 38092322 ~ 38092734 (+) True G253834
TU289648 other downstream 685714 38441166 ~ 38441734 (+) True G254204
TU289899 other downstream 845035 38600487 ~ 38600866 (+) True G254445
TU290310 other downstream 1088058 38843510 ~ 38844556 (+) True G254816
TU290915 other downstream 1903607 39659059 ~ 39668088 (+) True LOC110519960

Expression Profile