G253412


Basic Information

Item Value
gene id G253412
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37814757 ~ 37816542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU288836
TGCTATGCGTAGCTATATGTAAGTTATTAGCGACAGGTCAACAATAAACATCGCAACAAACTTTCAAAGTAAAATAAAGTGTGAACATGGGACAGACACTCTTTTCCCAACATTTTTTCAAACACATAGCCTGTTCCTGTTACAGTACATGACAGAAATCAGCTCCTGTCTCTGGAATTAACTTTTACATACTGCATAAGAGTTGACTCACCTGATGTGCAAAACTATTCAACCTTCAGCTTGAATACAAATGAAGCACATCTCTCCATAAAGTAAAATGTCTTCTTTTTGCTGCATCATGATTGCATTAAAATACTGTACATCACTGATTTTGTGAGGGAACTTTGCTTGAGTTTTCATACCAATATTCTACAATGGAGAGGGTCGGTTAATTGTTTCCGATAGTCATTCTAGCTGGTCCATTGTCTGTACAcaagtaggatcttaatttgatcaccctgttgttgcaggaaatgTCCTGCACGGCATGAAATAGTTTAAAACTTAAAAATGTTGGACTTGATTTGCACAAACAAAAAATGGATCAACCCCATACAAAAATGtcaattcattataatccacataataattcacatttcctttaTCAaaactggtcaaattaagatcctatatctatctgtatgtgACATCTGAATAAATTGTCTTGAAAGAGGAGATTCGTTACCAAGTGATAATATGTGATTACCAACAGTCCATGTGACATGTTAATAGCCACACATTAGGAACAAAGGTGTCTGGGAAACTATCTTTAAAAAAGTGTTCAAATAAAAAACAGTATTACCTGTTGCAAAGGGTTACTATTGACAGCAAAAGTTGTTATTGGAAAGCAAAATGTTTGAGGTGTACATTTTCGAAATCAGTTGGGCTAAAGTGAATCAACCCTACGTATTTGTTCAGCACAATATAGGATTTAAATATCATAATTCCAGGACAAACATTTACATGCCTGCATGCTTTCTCACCAAAATGGCAGGTATTTTAAAGAATGATGGCTcagaaattaaacaaaaacaaACTATAAATTCATATAAATGTCAGTATTGTCTTCCTAATAGATCTACTGCATACCCAAAACCACCTCTTAACTTTATACATATACCATATTGATAGAGTGAGTTATCCTATCATTATCATCAGTTCTGGTATATACAACAATAGTAAAAAGGAAACTTGATTGTATTTTCTTATATTTAGaaaacattcaaatcaaatctcaGTCGCCTCCTTTGATCAACATATGAATAAATTAGAATTTTTTTCACAGGTTCTTTCCAAGCTTTATATTTTGGAATTAAActtgaaatacaaaacaaaaccTCTGAGTCTGACCATGTTCAAAGCTTTCTCGCTGGTTGAAATACAGTATAAAAAATCTTCAGTGCTGAGAATTTATCTGAGATATTACCAACAGTGTACCCCTTGGTAATTATTTACTGTGCTAAAAATGTGTTTATACTTAGAAAACAACCCACCTCAATGCATCAAAACCTGCTTTAGCTACTATATTATGTTGATATCTGTAAGAAAAAGTGTTCTAATTCTACATTCAGACACAACCCTTCTTCGGCGTTTGGCCAAACACACTTCCATTGAACTGCTACAGTAAACGCAGCGAGACTTGTTTCTGCTACTAAATCTGCCTGGATAAGGGCTCTTGAGTATCTTCATGGGATTGTTTTCCCCTTCAGCTCTCCTCATCATCTTCttatcagtacatcactgtggtTTTCAAGAACAGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU288836 True 1762 lncRNA 0.34 2 37814757 37816542

Neighbor

gene id symbol gene type direction distance location
LOC110519942 LOC106586050 coding upstream 59305 37748695 ~ 37756709 (+)
si:ch211-184m13.4 LOC106586045 coding upstream 122859 37688788 ~ 37691898 (+)
LOC110519939 LOC106604981 coding upstream 325187 37428004 ~ 37489579 (+)
LOC110519936 LOC106586041 coding upstream 390421 37419106 ~ 37424336 (+)
LOC110519932 LOC106591969 coding upstream 1155204 36657467 ~ 36659553 (+)
LOC110519944 LOC106586047 coding downstream 417801 38234343 ~ 38250022 (+)
LOC110519946 NA coding downstream 819404 38635946 ~ 38760490 (+)
LOC110519950 LOC106586053 coding downstream 1355355 39171897 ~ 39214104 (+)
trnaf-gaa NA coding downstream 1577099 39393641 ~ 39393713 (+)
LOC110519956 LOC105026395 coding downstream 1791627 39608169 ~ 39621078 (+)
G253393 NA non-coding upstream 11264 37802934 ~ 37803493 (+)
G253392 NA non-coding upstream 11875 37802608 ~ 37802882 (+)
G253316 NA non-coding upstream 53363 37760786 ~ 37761394 (+)
G253305 NA non-coding upstream 62487 37729005 ~ 37752270 (+)
G253418 LOC106586049 non-coding downstream 7872 37824414 ~ 37841104 (+)
G253496 NA non-coding downstream 116285 37932827 ~ 37933822 (+)
G253788 NA non-coding downstream 247772 38064314 ~ 38064525 (+)
G253789 NA non-coding downstream 248083 38064625 ~ 38064836 (+)
G253791 NA non-coding downstream 249178 38065720 ~ 38065929 (+)
G253299 NA other upstream 87419 37726948 ~ 37727338 (+)
G251845 zdhhc18 other upstream 1187215 36623610 ~ 36627542 (+)
G251773 NA other upstream 1289584 36511574 ~ 36579307 (+)
LOC110519579 gmeb1 other upstream 2593385 35203647 ~ 35221874 (+)
rab42b rab42 other upstream 2641294 35153546 ~ 35173463 (+)
G253834 LOC100136012 other downstream 275780 38092322 ~ 38092734 (+)
G254204 NA other downstream 624624 38441166 ~ 38441734 (+)
G254445 NA other downstream 783945 38600487 ~ 38600866 (+)
G254816 NA other downstream 1026968 38843510 ~ 38844556 (+)
LOC110519960 LOC106586058 other downstream 1842517 39658753 ~ 39668297 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G51957 NA non-coding CI01000009 null 1231128 ~ 1233278 (-)