G253496


Basic Information

Item Value
gene id G253496
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37932827 ~ 37933822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU288925
GTAACATTCTCAGGCTGACTGAGCTCACAGGGAAATACCAGCAAGGGTGAATAAAGAAAACAACAGGAACTGAAAAAGGCGGATTCCCACCCTGACAGGGGCCAAATTGAACGTGACACAAACACTGCACCAGTTAACTCACTCCACAATGACTGATTGACATCAGACTGAAGAACACAGAGTAAGGCTGGCTAAAGATACCGGTAACACGTAAAGTTTAAGACTTTCCCAAATGACAATTATCTTAGACACGTTTTATCAGGTCTTCTATCTAACTGAGGGGAAAATCACCTGCTTTATTTATTGAGAAGCTGTACTTCAATAGTGAGAAATGTCTCAGTCTCTGTAGCAAAAACATTGTGCTATCCAGGAGCCCGAGTACatgacatcaataagctgctcccaaacattataaacctgcattaggacatcaataagctgctcccaaacattataaaccagcatcaggacatcaataagctgctcccaaacattataaacctgcattaggacatcaataaactgctcccaaacattataaacctgcatcaggacatcaataagctgctcccaaacattataaacctgcatcaggacatcaataaactgctcccaaacattataaacctgcatcaggacatcaataaactgctcccaaacattataaacctgcatcaggacatcaataacctgctcccaaacattataaacctgcattaggacatcaataagctgctcccaaacattatacacctgcatcaggacatcaataacctgctcacaaacattataaacctgcatcaggacatcaataatctgctccctaacattataaacctgcatcaggacattgATAAGCttctcccaaacattataaacctgcatcaggacatcaataagctgctcccaaacattataaacctgcatcaggtcatcaataacctgctcccaaac

Function

NR:

description
uncharacterized protein LOC105354118

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU288925 True 954 lncRNA 0.40 2 37932827 37933822

Neighbor

gene id symbol gene type direction distance location
LOC110519942 LOC106586050 coding upstream 177375 37748695 ~ 37756709 (+)
si:ch211-184m13.4 LOC106586045 coding upstream 240929 37688788 ~ 37691898 (+)
LOC110519939 LOC106604981 coding upstream 443257 37428004 ~ 37489579 (+)
LOC110519936 LOC106586041 coding upstream 508491 37419106 ~ 37424336 (+)
LOC110519932 LOC106591969 coding upstream 1273274 36657467 ~ 36659553 (+)
LOC110519944 LOC106586047 coding downstream 300521 38234343 ~ 38250022 (+)
LOC110519946 NA coding downstream 702124 38635946 ~ 38760490 (+)
LOC110519950 LOC106586053 coding downstream 1238075 39171897 ~ 39214104 (+)
trnaf-gaa NA coding downstream 1459819 39393641 ~ 39393713 (+)
LOC110519956 LOC105026395 coding downstream 1674347 39608169 ~ 39621078 (+)
G253418 LOC106586049 non-coding upstream 91723 37824414 ~ 37841104 (+)
G253412 NA non-coding upstream 116285 37814757 ~ 37816542 (+)
G253393 NA non-coding upstream 129334 37802934 ~ 37803493 (+)
G253392 NA non-coding upstream 129945 37802608 ~ 37802882 (+)
G253316 NA non-coding upstream 171433 37760786 ~ 37761394 (+)
G253788 NA non-coding downstream 130492 38064314 ~ 38064525 (+)
G253789 NA non-coding downstream 130803 38064625 ~ 38064836 (+)
G253791 NA non-coding downstream 131898 38065720 ~ 38065929 (+)
G253800 NA non-coding downstream 137920 38071742 ~ 38071994 (+)
G253822 NA non-coding downstream 151419 38085241 ~ 38085465 (+)
G253299 NA other upstream 205489 37726948 ~ 37727338 (+)
G251845 zdhhc18 other upstream 1305285 36623610 ~ 36627542 (+)
G251773 NA other upstream 1407654 36511574 ~ 36579307 (+)
LOC110519579 gmeb1 other upstream 2711455 35203647 ~ 35221874 (+)
rab42b rab42 other upstream 2759364 35153546 ~ 35173463 (+)
G253834 LOC100136012 other downstream 158500 38092322 ~ 38092734 (+)
G254204 NA other downstream 507344 38441166 ~ 38441734 (+)
G254445 NA other downstream 666665 38600487 ~ 38600866 (+)
G254816 NA other downstream 909688 38843510 ~ 38844556 (+)
LOC110519960 LOC106586058 other downstream 1725237 39658753 ~ 39668297 (+)

Expression


Co-expression Network