RNA id: XM_021596759.2


Basic Information

Item Value
RNA id XM_021596759.2
length 2178
RNA type mRNA
GC content 0.50
exon number 10
gene id rcc1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36381470 ~ 36387216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATCAGACTGACCGCCAATGCAGCATAATCGATTCTGATTCTGTTTGTAGTTGATATGTGTGCAAGTTCAACATTTACCTTTTGCTACTATTTCTGTCAAGTCTACCTATACAATTTGATGCATACGTTAAGACTGTTTTCGTTTTTACTAAACAGTGCGTTCTAAATAGTACATACGGTGTATTGGCAAGACAGATTTCTAACATGACCACTGTCTCTTTAAAAAATTGACGGTGCGTGGTCTGTGTAGAACAGTTGCAGACTGGGATAGCTTACAGTAACACGCACACTGAACCAGTGTGGCTTCATCTCTGTCAGCTACCAAAGTGATCCACGGTACAGGGTCTGTTGTAGCCATGTCTGCAAAGAAGGCTCTTAAGAGACATAAGGAAAGTAAACCAGAGGAAGTAAAGGATCCTAAGAAAGTTAAAGTTTCCCACAGCAGCTATGGGCAGGAGAAGGGTCTGGTTCTAGTGCTGGGCCAAGGGGACGTAGGACAGCTGGGTCTGGGAGAGGACATCATGGAGAGGAAGAGGCCGGCCCTGGTGACCCTGCCTGAGGGTGTGGTGCAGGTGGCGGCGGGGGGCATGCACACAGTCTGTCTCAGTGACACTGGATATATCTACACGTTTGGCTGCAATGACGAGGGTGCTCTGGGTCGAGAGACTACAGAGGAGGGCTCCGAGATGGTGCCAGGAAAGGTGGCCCTGAACGAGAGGGTGGTTCAGGTGTCTGCTGGGGACAGTCACACAGCTGCACTCACAGACGACGGCGCAGTATACATCTGGGGCTCTTTCAGGGATAACAGCGGAGTCATTGGTCTACTAGAGCCTATGAAGAAGGTTACTGTGCCTGTCAAGGTCCCCGTGAAAGGGCCTGTGATGAAAATAGCATCAGGTAATGACCACTTGGTGATGCTGACCGCAAGCGGCGACCTCTACACATCAGGCTGCGGAGAGCAGGGGCAGCTGGGAAGGGTGCCAGAGCTCTTTGCCAACCGAGGGGGCAGGAAAGGGCTGTTGCGGTTGCTGATACCTCAGATTGTGAAGGTCCAGTCTAGGGGCAAAGTTCACTTCACAGATGCCTTCTGTGGTGCTTATATGACCATTGCTGTGTCAAAAGAAGGCCACGTCTACGGATTTGGACTGTCAAACTACCATCAGCTTGGGACCAAACTCATCAGCACATGCTTCGTTCCAATAAAACTTACCACCTTCAAAAACTCCACCATTAACTGGATTGGCTTCTCAGGGGGACAGCACCACACAGTCTGCCTCGACTCTGCCGGGAAGGTGTACAGCCTGGGCCGGGCGGAGTATGGGCGTCTGGGTCTGGGCCAGGGGGCAGAGGAGAAGAGCGAGCCCACGCCTGTGGAAGGACTGGATGAAGCCCAGGTGGTGGCATGTGGGGCATCGGTCAGCTACGCTGTCACCAAACAAGGATCTGTGTATGCCTGGGGTATGGGCACTAACCTCCAGCTTGGCACGGGTGAGGAGGATGATGAATGGAGCCCTGTAGAGATGACAGGCAAGCAGCTGGAGAACCGCATAGTACTGATGGTCGCCAGCGGCGGGCAGCACACAGTCCTGCTGGTCAAAGACAAGCAGGAGAGTTGATGTATCCTCAGGCAGGGGAAGGTTGATCTTGTTGGTCTGCACCAGAGGGATCTGCGTTAAATACCTACATGTGGGTGAGGGGTTTGTGGACGAATGTGCCTTCCTGTGCTGAGCCAGGTAAGCTgtggagggagtgtggtgatgggGCAGTGGTGAGACTGACTAGTCTCTGTTAAAGAGGGCTCTGATCTCTCCCACTCAGTGCAAAAATCCCCTAATGTATTTGGATGTGATCATTAAGAAAGagaaacacttttttttaaaaatctagtTTGTTTAGTTATTTTTGTATGACAATCTTTAGGATGCCAGTGTGTGTGGGGAAAATAGTGGACGAGCCTTTTAATGAAATCCCAAGTCACAGCCTTTTAAGATTCCCATTTTTGTTCCAagcaataaccccccccccccccttcccatgGCATCAGTAAGATGAGTACTTGTATTTCATGTCAGCAAGGTCCTTTTGCTTGAACCATGTAGTTGAGACAGCTGTTCACTGTACCCCCTTGCACAATTATTTGCTGGTCCAACTTGGAAATAAAGTACAATTTTACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286978 lncRNA upstream 10180 36371090 ~ 36371290 (+) True G251694
TU286581 lncRNA upstream 45890 36335370 ~ 36335580 (+) True G251334
TU286576 lncRNA upstream 51431 36329721 ~ 36330039 (+) True G251329
TU286572 lncRNA upstream 55450 36325735 ~ 36326020 (+) True G251325
TU286507 lncRNA upstream 63274 36317360 ~ 36318196 (+) True phactr4b
TU286994 lncRNA downstream 6632 36393848 ~ 36394064 (+) True G251708
TU287009 lncRNA downstream 21063 36408279 ~ 36433127 (+) False G251720
TU287010 lncRNA downstream 21063 36408279 ~ 36420552 (+) True G251720
TU287011 lncRNA downstream 24737 36411953 ~ 36423468 (+) True G251721
TU287012 lncRNA downstream 31281 36418497 ~ 36425084 (+) True G251722
XM_036973968.1 mRNA upstream 13154 36317313 ~ 36368316 (+) False phactr4b
XM_036973969.1 mRNA upstream 13154 36317313 ~ 36368316 (+) False phactr4b
XM_036973970.1 mRNA upstream 13154 36317313 ~ 36368316 (+) False phactr4b
XM_036973971.1 mRNA upstream 13154 36317313 ~ 36368316 (+) False phactr4b
XM_036973972.1 mRNA upstream 13154 36317313 ~ 36368316 (+) False phactr4b
XR_005044177.1 mRNA downstream 270251 36657467 ~ 36659553 (+) True LOC110519932
XM_021596823.2 mRNA downstream 1031890 37419106 ~ 37424336 (+) True LOC110519936
XR_002472909.2 mRNA downstream 1098367 37485583 ~ 37489562 (+) False LOC110519939
XR_002472908.2 mRNA downstream 1099866 37487082 ~ 37489570 (+) False LOC110519939
XM_021596827.2 mRNA downstream 1301572 37688788 ~ 37691898 (+) True si:ch211-184m13.4
TU285526 other upstream 1160098 35219832 ~ 35221372 (+) True LOC110519579
TU285376 other upstream 1208007 35153702 ~ 35173463 (+) True rab42b
TU284433 other upstream 1960858 34419890 ~ 34420612 (+) True G249323
TU284354 other upstream 2078563 34302572 ~ 34302907 (+) True G249245
TU283840 other upstream 2368413 34006158 ~ 34013057 (+) True G248795
TU287065 other downstream 124358 36511574 ~ 36525173 (+) True G251773
TU287145 other downstream 236394 36623610 ~ 36627542 (+) True G251845
TU288722 other downstream 1339732 37726948 ~ 37727338 (+) True G253299
TU289268 other downstream 1705106 38092322 ~ 38092734 (+) True G253834
TU289648 other downstream 2053950 38441166 ~ 38441734 (+) True G254204

Expression Profile