gad1a (gad1)


Basic Information

Item Value
gene id gad1a
gene name gad1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49266948 ~ 49281964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597139.2
ACCAAAAGTCACGTTATAGATGAAAGCGCCACTATTCTATGTACATTTAGCAGACAAAGCGGATCTGTTcgatattggggggggggggggaaatgttcAGCACCAGAGGAGGTATTGGTGTGACTCATGCGTGCGTAGTAACGAATAAATAGTCAATGCACGCGGCTCTAAATATCAGCAAATCAAACGTAGGCTACTTCTCTAAAAAGGTCACTGTGGATTGGATTTTGTAGACTGATATTGAACTGATATTCAAAACCCTGTTTTTCTTGAAGTGTCAAAAGCGCACCAGACGTTGCGTTGCGTTGCCAACGGACTTTATTTCATCATCGTCCCATAGTTTCTTTCTGGGGCTCTACTTGGTCACCTGTACCCACCCTCAGCACGTGAATGTGACTTTTCATCTTGAATAAAATAAGAAAGGTTTCGCAGAAAGTGACAGCGAGCTTTGGAGTGAGGACATTTGTACTGTATCTTAGGAGTGATGGCGGCGTCTGCACCTTCCTCGTCTGGCAACGAACCGGATCCCAACTCGACAAATTTACGACCACCAGGCTCAAGCTATGACGCTTGGTGTGGAGTTGCTCACGGATGTTCTAGAAAATTGGGAATGAAGATATGTGGATTTTTGCAGAAGAACAACAACCTCGAGGAGAAGATTAGATCGTCGAAGGACCTGCTGGATAACAGCGACAGGGATTCCCGTTTCAGACGCACGGAGACGGACTTTTCCAATCTATTTGCTAGAGATTTATTACCAGCTAAAAATGGAGAGGAGCCAACTATGCAGTTTTTGTTGGAGGTGGTGGATATTCTCACAAACTACGTCCGGAAGACCTTCGACAGATCCACCAAGGTCCTGGACTTCCACCACCCCCACCAGCTGCTGGAAGGCATGGAGGGCTTCAACCTGGAGCTATCTGACCAACCTGAATCTCTGGAGCAGATCCTGGTGGACTGTAGGGATACCCTGAAATACGGAGTGAGAACAGGTCACCCCAGGTTTTTCAATCAGCTCTCTACCGGCTTAGACATCATTGGCTTGTCAGGAGAATGGCTCACCTCCACTGCAAACACTAACATGTTCACCTATGAGATTGCCCCAGTCTTCGTGCTCATGGAACAGCTGACGCTGAAGAAGATGAGGGAGATCATTGGCTGGCCTGATGGAGAGGGCGATGGGATATTCTCACCAGGTGGAGCGATATCCAACATGTACAGTGTGATGATCGCCCGCTACAAGTTCTTCCCTGAAGTCAAGACCAAAGGCATGACTGCTGCCCCCAGACTGGTGCTCTTCACCTCTGAGCATAGCCACTACTCTATAAAGAAAGCCAGTGCTGCTCTGGGCTTTGGAACAGAAAACCTGATCCTGTTGAGCACAGATGAGAGAGGGAGAGTCATTCCCGCTGATTTGGAAGCCAAGGTCATCGATGCCAAGGCGAGGGGTTGTGTCCCAATGTTCGTGAACGCTACAGCTGGTTCCACAGTGTATGGAGCATTCGATCCCATCCACGAGCTTGCAGACATCTGCGAGAAATACAACATGTGGTTACATGTGGATGGTGCGTGGGGAGGAGGCCTACTGATGTCCAGGAAGCACAGGCACAAGCTGTGTGGTGTAGAGAGGGCCAACTCGGTCACCTGGAACCCTCACAAGATGATGGGTGTGCCACTGCAGTGTTCTGCCATTCTGGTCAGAGAGAGGGGAGTTTTATCAGGCTGCAACTCCATGTGCGCTGGCTACCTCTTCCAACCAGACAAACAGTACGATGTATCGTACGACACGGGGGACAAGGCCATCCAGTGTGGACGACATGTAGATATCTTCAAATTCTGGCTCATGTGGAAAGCGAAGGGAACAATAGGGTTTGAACAGCACATCGACAAGTGTTTGGACCTCTCGCATTATCTCTACACTAAAATAAAGGGTCGCGAGGGCTATCAGATGGTGTTCGATGGAGAGCCCCAGCACACGAATGTCTGCTTCTGGTACCTTCCGCCAGGCATTCGTGACATGCCCGATGgtcaggagaagagggagaagttgCATAAGGTGGCCCCCAAGATCAAGGCGTTGATGATGGAGTCTGGAACTACCATGGTGGGCTACCAGCCTCAGGGAGACAAGGTCAACTTTTTCCGAATGGTCATCTCCAATCCTGCCGCCACCAGGTCAGATATCGACTTCTTGACCGATGAGATTGAGAGACTGGGGCAGGACTTGTAATGGCCACACCCATTAGGAGGATGTTGCCCTTTGACCTTTCATTCTCAGCTTTGTCATGTCCAGCTCTAAAAAGACCCCGAGCTACACTGAGCTTCATATTCCTGTTGTCTCTTGACCAATCATGTAGGACTTTGAATCTTCAGCTGCTTATAGGTCTTTTTAGACCACAGGAAACCTTCAGAATAATAAATGTGGGTCTcatctgtt
>XM_021597140.2
ACCAAAAGTCACGTTATAGATGAAAGCGCCACTATTCTATGTACATTTAGCAGACAAAGCGGATCTGTTcgatattggggggggggggggaaatgttcAGCACCAGAGGAGGTATTGGTGTGACTCATGCGTGCGTAGTAACGAATAAATAGTCAATGCACGCGGCTCTAAATATCAGCAAATCAAACGTAGGCTACTTCTCTAAAAAGGTCACTGTGGATTGGATTTTGTAGACTGATATTGAACTGATATTCAAAACCCTGTTTTTCTTGAAGTGTCAAAAGCGCACCAGACGTTGCGTTGCGTTGCCAACGGACTTTATTTCATCATCGTCCCATAGTTTCTTTCTGGGGCTCTACTTGGTCACCTGTACCCACCCTCAGCACGGAGTGATGGCGGCGTCTGCACCTTCCTCGTCTGGCAACGAACCGGATCCCAACTCGACAAATTTACGACCACCAGGCTCAAGCTATGACGCTTGGTGTGGAGTTGCTCACGGATGTTCTAGAAAATTGGGAATGAAGATATGTGGATTTTTGCAGAAGAACAACAACCTCGAGGAGAAGATTAGATCGTCGAAGGACCTGCTGGATAACAGCGACAGGGATTCCCGTTTCAGACGCACGGAGACGGACTTTTCCAATCTATTTGCTAGAGATTTATTACCAGCTAAAAATGGAGAGGAGCCAACTATGCAGTTTTTGTTGGAGGTGGTGGATATTCTCACAAACTACGTCCGGAAGACCTTCGACAGATCCACCAAGGTCCTGGACTTCCACCACCCCCACCAGCTGCTGGAAGGCATGGAGGGCTTCAACCTGGAGCTATCTGACCAACCTGAATCTCTGGAGCAGATCCTGGTGGACTGTAGGGATACCCTGAAATACGGAGTGAGAACAGGTCACCCCAGGTTTTTCAATCAGCTCTCTACCGGCTTAGACATCATTGGCTTGTCAGGAGAATGGCTCACCTCCACTGCAAACACTAACATGTTCACCTATGAGATTGCCCCAGTCTTCGTGCTCATGGAACAGCTGACGCTGAAGAAGATGAGGGAGATCATTGGCTGGCCTGATGGAGAGGGCGATGGGATATTCTCACCAGGTGGAGCGATATCCAACATGTACAGTGTGATGATCGCCCGCTACAAGTTCTTCCCTGAAGTCAAGACCAAAGGCATGACTGCTGCCCCCAGACTGGTGCTCTTCACCTCTGAGCATAGCCACTACTCTATAAAGAAAGCCAGTGCTGCTCTGGGCTTTGGAACAGAAAACCTGATCCTGTTGAGCACAGATGAGAGAGGGAGAGTCATTCCCGCTGATTTGGAAGCCAAGGTCATCGATGCCAAGGCGAGGGGTTGTGTCCCAATGTTCGTGAACGCTACAGCTGGTTCCACAGTGTATGGAGCATTCGATCCCATCCACGAGCTTGCAGACATCTGCGAGAAATACAACATGTGGTTACATGTGGATGGTGCGTGGGGAGGAGGCCTACTGATGTCCAGGAAGCACAGGCACAAGCTGTGTGGTGTAGAGAGGGCCAACTCGGTCACCTGGAACCCTCACAAGATGATGGGTGTGCCACTGCAGTGTTCTGCCATTCTGGTCAGAGAGAGGGGAGTTTTATCAGGCTGCAACTCCATGTGCGCTGGCTACCTCTTCCAACCAGACAAACAGTACGATGTATCGTACGACACGGGGGACAAGGCCATCCAGTGTGGACGACATGTAGATATCTTCAAATTCTGGCTCATGTGGAAAGCGAAGGGAACAATAGGGTTTGAACAGCACATCGACAAGTGTTTGGACCTCTCGCATTATCTCTACACTAAAATAAAGGGTCGCGAGGGCTATCAGATGGTGTTCGATGGAGAGCCCCAGCACACGAATGTCTGCTTCTGGTACCTTCCGCCAGGCATTCGTGACATGCCCGATGgtcaggagaagagggagaagttgCATAAGGTGGCCCCCAAGATCAAGGCGTTGATGATGGAGTCTGGAACTACCATGGTGGGCTACCAGCCTCAGGGAGACAAGGTCAACTTTTTCCGAATGGTCATCTCCAATCCTGCCGCCACCAGGTCAGATATCGACTTCTTGACCGATGAGATTGAGAGACTGGGGCAGGACTTGTAATGGCCACACCCATTAGGAGGATGTTGCCCTTTGACCTTTCATTCTCAGCTTTGTCATGTCCAGCTCTAAAAAGACCCCGAGCTACACTGAGCTTCATATTCCTGTTGTCTCTTGACCAATCATGTAGGACTTTGAATCTTCAGCTGCTTATAGGTCTTTTTAGACCACAGGAAACCTTCAGAATAATAAATGTGGGTCTcatctgtt
>XM_021597141.2
ACCAAAAGTCACGTTATAGATGAAAGCGCCACTATTCTATGTACATTTAGCAGACAAAGCGGATCTGTTcgatattggggggggggggggaaatgttcAGCACCAGAGGAGGTATTGGTGTGACTCATGCGTGCGTAGTAACGAATAAATAGTCAATGCACGCGGCTCTAAATATCAGCAAATCAAACGTAGGCTACTTCTCTAAAAAGGTCACTGTGGATTGGATTTTGTAGACTGATATTGAACTGATATTCAAAACCCTGTTTTTCTTGAAGTGTCAAAAGCGCACCAGACGTTGCGTTGCGTTGCCAACGGACTTTATTTCATCATCGTCCCATAGTTTCTTTCTGGGGCTCTACTTGGTCACCTGTACCCACCCTCAGCACGGTTTCGCAGAAAGTGACAGCGAGCTTTGGAGTGAGGACATTTGTACTGTATCTTAGGAGTGATGGCGGCGTCTGCACCTTCCTCGTCTGGCAACGAACCGGATCCCAACTCGACAAATTTACGACCACCAGGCTCAAGCTATGACGCTTGGTGTGGAGTTGCTCACGGATGTTCTAGAAAATTGGGAATGAAGATATGTGGATTTTTGCAGAAGAACAACAACCTCGAGGAGAAGATTAGATCGTCGAAGGACCTGCTGGATAACAGCGACAGGGATTCCCGTTTCAGACGCACGGAGACGGACTTTTCCAATCTATTTGCTAGAGATTTATTACCAGCTAAAAATGGAGAGGAGCCAACTATGCAGTTTTTGTTGGAGGTGGTGGATATTCTCACAAACTACGTCCGGAAGACCTTCGACAGATCCACCAAGGTCCTGGACTTCCACCACCCCCACCAGCTGCTGGAAGGCATGGAGGGCTTCAACCTGGAGCTATCTGACCAACCTGAATCTCTGGAGCAGATCCTGGTGGACTGTAGGGATACCCTGAAATACGGAGTGAGAACAGGTCACCCCAGGTTTTTCAATCAGCTCTCTACCGGCTTAGACATCATTGGCTTGTCAGGAGAATGGCTCACCTCCACTGCAAACACTAACATGTTCACCTATGAGATTGCCCCAGTCTTCGTGCTCATGGAACAGCTGACGCTGAAGAAGATGAGGGAGATCATTGGCTGGCCTGATGGAGAGGGCGATGGGATATTCTCACCAGGTGGAGCGATATCCAACATGTACAGTGTGATGATCGCCCGCTACAAGTTCTTCCCTGAAGTCAAGACCAAAGGCATGACTGCTGCCCCCAGACTGGTGCTCTTCACCTCTGAGCATAGCCACTACTCTATAAAGAAAGCCAGTGCTGCTCTGGGCTTTGGAACAGAAAACCTGATCCTGTTGAGCACAGATGAGAGAGGGAGAGTCATTCCCGCTGATTTGGAAGCCAAGGTCATCGATGCCAAGGCGAGGGGTTGTGTCCCAATGTTCGTGAACGCTACAGCTGGTTCCACAGTGTATGGAGCATTCGATCCCATCCACGAGCTTGCAGACATCTGCGAGAAATACAACATGTGGTTACATGTGGATGGTGCGTGGGGAGGAGGCCTACTGATGTCCAGGAAGCACAGGCACAAGCTGTGTGGTGTAGAGAGGGCCAACTCGGTCACCTGGAACCCTCACAAGATGATGGGTGTGCCACTGCAGTGTTCTGCCATTCTGGTCAGAGAGAGGGGAGTTTTATCAGGCTGCAACTCCATGTGCGCTGGCTACCTCTTCCAACCAGACAAACAGTACGATGTATCGTACGACACGGGGGACAAGGCCATCCAGTGTGGACGACATGTAGATATCTTCAAATTCTGGCTCATGTGGAAAGCGAAGGGAACAATAGGGTTTGAACAGCACATCGACAAGTGTTTGGACCTCTCGCATTATCTCTACACTAAAATAAAGGGTCGCGAGGGCTATCAGATGGTGTTCGATGGAGAGCCCCAGCACACGAATGTCTGCTTCTGGTACCTTCCGCCAGGCATTCGTGACATGCCCGATGgtcaggagaagagggagaagttgCATAAGGTGGCCCCCAAGATCAAGGCGTTGATGATGGAGTCTGGAACTACCATGGTGGGCTACCAGCCTCAGGGAGACAAGGTCAACTTTTTCCGAATGGTCATCTCCAATCCTGCCGCCACCAGGTCAGATATCGACTTCTTGACCGATGAGATTGAGAGACTGGGGCAGGACTTGTAATGGCCACACCCATTAGGAGGATGTTGCCCTTTGACCTTTCATTCTCAGCTTTGTCATGTCCAGCTCTAAAAAGACCCCGAGCTACACTGAGCTTCATATTCCTGTTGTCTCTTGACCAATCATGTAGGACTTTGAATCTTCAGCTGCTTATAGGTCTTTTTAGACCACAGGAAACCTTCAGAATAATAAATGTGGGTCTcatctgtt

Function

symbol description
gad1 Enables glutamate decarboxylase activity. Predicted to be involved in chemical synaptic transmission; glutamate decarboxylation to succinate; and protein-pyridoxal-5-phosphate linkage. Predicted to act upstream of or within locomotory exploration behavior and social behavior. Predicted to be located in several cellular components, including axon; neuron projection terminus; and synapse. Implicated in anxiety disorder; bipolar disorder; developmental and epileptic encephalopathy 89; schizophrenia; and spastic quadriplegia.

NR:

description
glutamate decarboxylase 1-like isoform X1

GO:

id name namespace
GO:0019752 carboxylic acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K01580 E4.1.1.15, gadB, gadA, GAD; glutamate decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597139.2 False 2437 mRNA 0.49 17 49266948 49281964
XM_021597140.2 False 2345 mRNA 0.50 17 49266948 49281964
XM_021597141.2 True 2401 mRNA 0.49 17 49266948 49281964

Neighbor

gene id symbol gene type direction distance location
LOC110520096 LOC106586217 coding upstream 9315 49255350 ~ 49257633 (+)
myo3b myo3b coding upstream 17696 49135871 ~ 49249252 (+)
ubr3 LOC100380624 coding upstream 132778 49088713 ~ 49134170 (+)
LOC110520093 LOC106586213 coding upstream 187693 49075093 ~ 49079255 (+)
LOC110520091 LOC106586211 coding upstream 196663 49062485 ~ 49070285 (+)
LOC110520099 gors2 coding downstream 14198 49296162 ~ 49300776 (+)
dcaf17 dcaf17 coding downstream 75562 49357526 ~ 49364818 (+)
LOC110520104 LOC106586222 coding downstream 83978 49365942 ~ 49368341 (+)
dync1i2a LOC106586225 coding downstream 86798 49368762 ~ 49390595 (+)
hat1 hat1 coding downstream 131528 49413492 ~ 49430082 (+)
G267217 NA non-coding upstream 12734 49253953 ~ 49254214 (+)
G267214 NA non-coding upstream 15816 49250783 ~ 49251132 (+)
G267215 NA non-coding upstream 17334 49249433 ~ 49249614 (+)
G267190 NA non-coding upstream 62265 49204062 ~ 49204683 (+)
G267099 NA non-coding downstream 1607 49283571 ~ 49285103 (+)
G267235 NA non-coding downstream 19304 49301268 ~ 49301555 (+)
G267259 NA non-coding downstream 51212 49333176 ~ 49385963 (+)
G267308 NA non-coding downstream 165561 49447525 ~ 49447786 (+)
G267309 NA non-coding downstream 166584 49448548 ~ 49448806 (+)
LOC110520046 LOC106586167 other upstream 2434704 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3082144 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 3187523 46075484 ~ 46079425 (+)
G263710 NA other upstream 3332530 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 3427468 45838921 ~ 45839480 (+)
G267358 NA other downstream 228839 49510803 ~ 49512475 (+)
G267381 NA other downstream 272534 49554498 ~ 49555838 (+)
G267529 NA other downstream 554653 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 880337 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 1320338 50601983 ~ 50618761 (+)

Expression


Co-expression Network