LOC110520091 (LOC106586211)


Basic Information

Item Value
gene id LOC110520091
gene name LOC106586211
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49062485 ~ 49070285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597128.2
AATGGGGCAGTCCTTATCCGAAATGTTCATTCAAAACCAACTGAATTGAGAACTTCTCAGTGTCTGTCCACCAGCAGTTTACATAAAGGTTCCCCATCTCTGAAATTGTCCGTAGCTGTTGAGAACAGAAAAATGGCCCCAATATCCATTAAACGCATTTTAATCAGTGAAAGTGTTGATCCTTGTTGTAAGAAGATCCTGCAAGAAAATGGAATCCAAGTTACGGAGAAGCAAAACATGAGTAAGGATGACTTGATTGCAGAGATCAAGGACTATGATGGCCTTGTCGTTAGATCTGCAACAAAGGTGACAGCTGATGTCATCAATGCTACTGGTAACCTCCAAATCATTGGAAGAGCTGGGACTGGCGTTGACAACGTAGATGTAGATACTGCCACTAAAAAGGGCATAATTGTCATGAACACACCAAGTGGCAACACCATCAGTGCTGCAGAGCTGACATGTACCCTTTTGATGAGCCTCTCAAGACATGTGCCACAAGCAGCTATGTCCATGAAGGCAGGGAACTGGGATCGTAAAAAGTTCATGGGTGCAGAGATGTATGGCAAAATACTTGGAATAGTTGGACTTGGAAGAATTGGAAAGGAAGTTGCCACCAGAATGCAgtcctttggcatgaagACCATCGGCTATGATCCAATCACTCCTCCTGAGGTGACTGCTACCTGGGGGGTGGATCAGATGTCCCTGGAACAGCTGTGGCCCCAGTGTGATTACATCACCGTCCACACGCCCCTCATGCCTTCTACAGCTGGACTACTGAACGACACCTCATTTGCTAAGTGCAAGAAAGGTGTAAAGGTCGTGAACTGTGCACGCGGGGGCATCATCGATGAGGATGCTCTCCTCAGAGCTTTGGAGTCTGGACAGTGTGGAGGGGCTGGCCTTGATGTTTTTGTTGAGGAACCCCCAAAGAACCGTGCCCTGGTGAACCATCCCAATGTGATTAGCTGTCCTCATTTGGGTGCCAGTACAAAGGAGGCCCAGGCACGCTGTGGACAGGACATCGCTCTGCAGATTGTGGACATGGTGATGGGCAAGGGCTTGGTTGGAGCAgtgaatGCCCAGGTTTTGGCAAGCACATTCTCCCCTGGGTCTCACCAGTGGATCAAACTTGGAGAGGCCGTAGGAGTTGTGCTGAAATCATGCACCACCTCTAAACAGCCCTTCAGCCAAGTCCAAATCACAACTCAAGGAGACTGCTTGAAAGGTTCCTCTGGTTACATGACTTCAGCAGTGATGGTTGGATTACTTACTGATGTTTCCAAGAGTTGCCCCAACCTGGTCAATTCACTGACCCTGGCCAAGGAATCTGGAATCAAGGTAACCAGAAATCACAGTGAGGGTTTGACTCAAGGTGCATGTGAGGTTGAGATCTCTGTCAACGGCTCCAGCTACAGAGCTACTGGTTCAGTCCAGGGAGGTGCACCAGTCTTGTTGGAGCTGAACCACAGCGTGTTCCGacagcctgtctctctcactggcAACCTGCTGTTCTTAAAGGCCACGGCTTCTCCTCAGCTCCTGCCCTCCGTAACCGGTTTGCTGGCCACGGCAGGGGTGGAAATGGAGTCATTCAGTGCCCCTGCAACTCGTAGTGGAGATCAGTGGTATTGTGTGGGGTTATCCTCTCTCTTGGGGGACCTTGGTGCTTTAAAACCTTTGGTGAAAGAAGCAGCACAGCTCTCTGTGTAAATGGCAGTGAAAGCATTGTTACAATGCTGAGGGACCAGTAGAGCATTCCAATGTCTAAAATGTTAATTAATCAAAATGGTTTCTTGGCGTTTTAACATTGCAATACTTGGTTTACAACACAAACACGTAGAAGTTACTAAAAATGCACCTCTGTCATTTCTATTGTAGAGATGCTGGCTATATGTAATAAATAATCCAATTGTTACATTATT

Function

NR:

description
D-3-phosphoglycerate dehydrogenase-like

GO: NA

KEGG:

id description
K00058 serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597128.2 True 1928 mRNA 0.48 12 49062485 49070285

Neighbor

gene id symbol gene type direction distance location
LOC110520090 LOC106586208 coding upstream 4962 49052384 ~ 49057523 (+)
LOC110520088 LOC106586209 coding upstream 16482 49043334 ~ 49046003 (+)
LOC110520086 LOC106586207 coding upstream 27282 48995197 ~ 49035203 (+)
rdh3 rdh3 coding upstream 163998 48891513 ~ 48898487 (+)
LOC110520084 g6pc2 coding upstream 186242 48872108 ~ 48876243 (+)
LOC110520093 LOC106586213 coding downstream 4808 49075093 ~ 49079255 (+)
ubr3 LOC100380624 coding downstream 18428 49088713 ~ 49134170 (+)
myo3b myo3b coding downstream 65586 49135871 ~ 49249252 (+)
LOC110520096 LOC106586217 coding downstream 185065 49255350 ~ 49257633 (+)
gad1a gad1 coding downstream 196663 49266948 ~ 49281964 (+)
G267069 NA non-coding upstream 75633 48986650 ~ 48986852 (+)
G267031 LOC106586206 non-coding upstream 127003 48934753 ~ 48935482 (+)
G266941 NA non-coding upstream 281983 48777515 ~ 48780502 (+)
G266938 NA non-coding upstream 287542 48774578 ~ 48774943 (+)
LOC110520080 LOC106581709 non-coding upstream 395370 48645110 ~ 48667115 (+)
G267190 NA non-coding downstream 133777 49204062 ~ 49204683 (+)
G267215 NA non-coding downstream 179148 49249433 ~ 49249614 (+)
G267214 NA non-coding downstream 180498 49250783 ~ 49251132 (+)
G267217 NA non-coding downstream 183668 49253953 ~ 49254214 (+)
LOC110520046 LOC106586167 other upstream 2230241 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 2877681 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 2983060 46075484 ~ 46079425 (+)
G263710 NA other upstream 3128067 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 3223005 45838921 ~ 45839480 (+)
G267358 NA other downstream 440518 49510803 ~ 49512475 (+)
G267381 NA other downstream 484213 49554498 ~ 49555838 (+)
G267529 NA other downstream 766332 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 1092016 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 1532017 50601983 ~ 50618761 (+)

Expression


Co-expression Network