LOC110520090 (LOC106586208)


Basic Information

Item Value
gene id LOC110520090
gene name LOC106586208
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49052384 ~ 49057523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597127.2
TCGTCTTCTGCGCATATttttacccaaaatgctttgacGTTTCCCGTCGCGCCATCTTTAGAAAACATTGTGGAAGAAGCGGTAGCCAAATGAAACTCGATTTCACCTTGTTGAGAATAACTAGCGTGAGATATTGGCCAACTGAGCTAATTTGTCTATAGAAGTTTGATCATGGGAATCAAGGTTCAGCGTCCACGCTGCTTCTTTGACATTGGCATCAGTAACGTGCTGGTTGGCAGAGTTGTGGTAGAATTGTTTTCTGATGTCTGTCCCAAAACATGTGAGAACTTTCGATGCCTCTGCACAGGCGAGAAAGGAGTTGGAAAAGGTACACAAAAACCTCTGCATTACAAAGGATGCATATTCCACAGAATTGTGAAGGACTTCATGATTCAAGGAGGAGACTTCAGTGAAGGCAATGGAAAGGGAGGGGAATCTATCTATGGTGGATTCTTTGAAGATGAAAGCTTCTCTGTCAAACATAACAAGGAGTACCTCCTGTCAATGGCAAACAGGGGCAAAGATACCAATGGATCACAGTTTTTCATAACAACAAAACCCACACCACACTTAGATGGTGTCCATGTGGTTTTTGGCCAAGTGATCTCTGGACAAGAGGTCGTTCAGACAATGGAGAGTCAAAAGACAGATGCCGGCAGTAGACCATACGCTGAGGTGAAAGTTATGAACTGTGGCGAGCTCATTCCAAAATCGAAAGCaaaaaaagaagagaagagaagacaaaAGGCCATCTCCAGTGGCAGCGACAGCTCAAGTGACTCTGACAGTTCTGACGTCTCTTCTGAATCTGCAAGTGACTCTGATAAAGAATCCAAGAAACGGAAGAAGAGGCACAAGAAAGAGTCCAAGAAGAAGGAcaagaaacagaagaagaaagaTAAGAAAGGGTCTGAGCCCGGCAGTGGTgatgagaaagaggaagaggttaCTTCTACGGTACGACCAGAGGAAATCCCTCCTATCCCAGAAAATAAGTTCCTTATGAGGAGAAGTCCTCAGCAACAAAAAGAAGAGGCTGAGGCTGGAAAGGAGCGGGAAAAGGCTAGGGAGAGGGAAAAGCCTAGGGACAGAATGTTTAATTGTCAGTCAACATATAAGAGGAGACTTCTGATGACAAGATCAGGCAGGACGATTAAAGGCAGAGGTCCAAGACGGTACCGAACTCCGTCACACTCCAGGTCAAGGTCAAGGGATCGTTTCCGACGCAGCGAGACTCCTCCACACTGGCGCCAGGAGATGCAGCGTGTACAAAGGGCACCAAGAGCATCCAGTGGAGACCGCTGGATCAAGGGTGATAAGGGTGACATGACAGAGAGCAGGAATGAGAGTGGCAAAGCTccaagaggaagagggaggaagactTCTGAAACCAAGCATGAAAACACTGCTGAAAACTCCAATcaaaacagagagaaggagaagaaaggtCGCTCTCATAGATCCAAGAGCAAAGAAAATGACCCTAATAAAACTGAAGACAAGCATAACAAACACAAGGCAAAGAAGGCCAAATCTCGAAGCCGCAGTAGGAGCAAAGAGAAAAGTTGTAGGTCCAaaagcagagagagggatcagAAACATGGCAAAAGTGATGATAAGAGGGGCCGCTCAAGAAGCAAGGACAGAAACCTAAATAAAGAGAGAGCCACAGAGTCTGGAACTCATGACTGTGATAGAAGTAAAGAACGCGCTAAACCCACTGAGGCTGACATTAAGAACAGAAAGGAGACAAAAGGGAGAAATGGTGAGAAGCTGAGGACAAAGTCTAGAAGCAAGGAGAGGAACTCTGGAAAGAACCGAAACCGATCTAACAGCAGaagcagggacagggggagacGTGCCTCATCTCGAGACAAAGAGCAAGCACGGGACAGAGAGCGAGGTAGGGAGCGCAGTAAGAGCATGGAAAGACAGcaccacagagagagggaggacaagaggagaggtaGATCCAAGAGCAGAGAACGGACAAGGAGTCCAGACAAGAATAAGAGCAGGGACTCGCGTAGAGGCAGGCGCTCCAGGAGTAAGAGCAACAATAGAGACCATAGCAAAGACGGTTCATCTCATCAGAGGAAGAACAAAGACAGTGAAGACACTCACAGACGAAGGCGGTCCAAGAGCAGCAACTCGGAGAATAAAGGGAAGGACAGAAGTAGAAAGAGCCCCATCTCCAAGAAGAAAAGGGATGGCATCCCAGAAAAGGAGTCCTCTCACAAGTCCAAAGATGCAGGGAAAAACCCTGAGCGGAATCAAAAGTCAAAGAGCCAAGAGAAGGATAAAAACCACAGCAAGAAAAAGAAGTCCAGTTCTGATGATAGTGATTAGTCCACTAAATGTTCATTCCTGTCCATCCTTGAACATACAAATGAATGCGCTGATGCCTAATAATGTGTGAGGTTCTGATGTAGACCTATTTTAGACACTTGTTAGATATCACAACAGATCCAATTCTGGAATATTTGTACAAATTAAGATTTCATAAGATTTGACAGCGGCTAAAAGCCATTTTATGTTTTAGTTATTTTTTTTCCGCTGTCAGACTAATTTGACAAATGTTGGGAATGTAATGTTTATTAATGGTCGAGTAAGGAAGTGACTGAACAGGTGAGTGTTGGAAGGAACATTTTTGTCAGGTTTTATAAAACATGTTCTCTTTCAGTCTGGTCTCCTACTGAGGGGACGTGATTCCATTGTGATAATTATAATGGAAGGGATGAGTTTGTCTTTCTGGGCTATATGCCTGACTCAAGTAATATTACATGTATGACTAATCATATGgttattttcaacattttgattgtTTAAATTACCAACAGTCTCATTGTGACAGAACATACTGTAAGTGAAACATATAAAAtggttttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactttccttTTTAGTATGCTGATATTTAAGTGGAGATGTCAGAAGGCTCAATTTGACTTGAAAGACAGGTAAGAGTGCAGACATTTTGTGAAATGATTGGGGTGTTAGATGCGTATACCGTttagttctttttttttttttttttacctgtttcaGGGAACCAGAACTTTTTATCTTGACCTCAGTCTCAAATTAGTTTTGTATAATTGTATCCATTTTTGTTAGTATTTTATGTTCTGATTTTCACCCATTACATCTTTCAAAATGTTTAAAATTCCTCACCAGAGCAATGTGTAAATACATTGCTGTGAAGTTCCATGTTAGTTCATACTAGGTGTTAAATTCCTGGGCATGACTTTCCTTTAAACTATAAATGAAAACCACTGGCTTTGTAAAAACGGGCCGAATTCAATATTCCCCAATGAACCATGTTTTAAAATAAAAGGATATggttaaaatgtt
>XM_036974383.1
GCGCCATCTTTAGAAAACATTGTGGAAGAAGCGGTAGCCAAATGAAACTCGATTTCACCTTGTTGAGAATAACTAGCGTGAGATATTGGCCAACTGAGCTAATTTGTTTGGCAGAGTTGTGGTAGAATTGTTTTCTGATGTCTGTCCCAAAACATGTGAGAACTTTCGATGCCTCTGCACAGGCGAGAAAGGAGTTGGAAAAGGTACACAAAAACCTCTGCATTACAAAGGATGCATATTCCACAGAATTGTGAAGGACTTCATGATTCAAGGAGGAGACTTCAGTGAAGGCAATGGAAAGGGAGGGGAATCTATCTATGGTGGATTCTTTGAAGATGAAAGCTTCTCTGTCAAACATAACAAGGAGTACCTCCTGTCAATGGCAAACAGGGGCAAAGATACCAATGGATCACAGTTTTTCATAACAACAAAACCCACACCACACTTAGATGGTGTCCATGTGGTTTTTGGCCAAGTGATCTCTGGACAAGAGGTCGTTCAGACAATGGAGAGTCAAAAGACAGATGCCGGCAGTAGACCATACGCTGAGGTGAAAGTTATGAACTGTGGCGAGCTCATTCCAAAATCGAAAGCaaaaaaagaagagaagagaagacaaaAGGCCATCTCCAGTGGCAGCGACAGCTCAAGTGACTCTGACAGTTCTGACGTCTCTTCTGAATCTGCAAGTGACTCTGATAAAGAATCCAAGAAACGGAAGAAGAGGCACAAGAAAGAGTCCAAGAAGAAGGAcaagaaacagaagaagaaagaTAAGAAAGGGTCTGAGCCCGGCAGTGGTgatgagaaagaggaagaggttaCTTCTACGGTACGACCAGAGGAAATCCCTCCTATCCCAGAAAATAAGTTCCTTATGAGGAGAAGTCCTCAGCAACAAAAAGAAGAGGCTGAGGCTGGAAAGGAGCGGGAAAAGGCTAGGGAGAGGGAAAAGCCTAGGGACAGAATGTTTAATTGTCAGTCAACATATAAGAGGAGACTTCTGATGACAAGATCAGGCAGGACGATTAAAGGCAGAGGTCCAAGACGGTACCGAACTCCGTCACACTCCAGGTCAAGGTCAAGGGATCGTTTCCGACGCAGCGAGACTCCTCCACACTGGCGCCAGGAGATGCAGCGTGTACAAAGGGCACCAAGAGCATCCAGTGGAGACCGCTGGATCAAGGGTGATAAGGGTGACATGACAGAGAGCAGGAATGAGAGTGGCAAAGCTccaagaggaagagggaggaagactTCTGAAACCAAGCATGAAAACACTGCTGAAAACTCCAATcaaaacagagagaaggagaagaaaggtCGCTCTCATAGATCCAAGAGCAAAGAAAATGACCCTAATAAAACTGAAGACAAGCATAACAAACACAAGGCAAAGAAGGCCAAATCTCGAAGCCGCAGTAGGAGCAAAGAGAAAAGTTGTAGGTCCAaaagcagagagagggatcagAAACATGGCAAAAGTGATGATAAGAGGGGCCGCTCAAGAAGCAAGGACAGAAACCTAAATAAAGAGAGAGCCACAGAGTCTGGAACTCATGACTGTGATAGAAGTAAAGAACGCGCTAAACCCACTGAGGCTGACATTAAGAACAGAAAGGAGACAAAAGGGAGAAATGGTGAGAAGCTGAGGACAAAGTCTAGAAGCAAGGAGAGGAACTCTGGAAAGAACCGAAACCGATCTAACAGCAGaagcagggacagggggagacGTGCCTCATCTCGAGACAAAGAGCAAGCACGGGACAGAGAGCGAGGTAGGGAGCGCAGTAAGAGCATGGAAAGACAGcaccacagagagagggaggacaagaggagaggtaGATCCAAGAGCAGAGAACGGACAAGGAGTCCAGACAAGAATAAGAGCAGGGACTCGCGTAGAGGCAGGCGCTCCAGGAGTAAGAGCAACAATAGAGACCATAGCAAAGACGGTTCATCTCATCAGAGGAAGAACAAAGACAGTGAAGACACTCACAGACGAAGGCGGTCCAAGAGCAGCAACTCGGAGAATAAAGGGAAGGACAGAAGTAGAAAGAGCCCCATCTCCAAGAAGAAAAGGGATGGCATCCCAGAAAAGGAGTCCTCTCACAAGTCCAAAGATGCAGGGAAAAACCCTGAGCGGAATCAAAAGTCAAAGAGCCAAGAGAAGGATAAAAACCACAGCAAGAAAAAGAAGTCCAGTTCTGATGATAGTGATTAGTCCACTAAATGTTCATTCCTGTCCATCCTTGAACATACAAATGAATGCGCTGATGCCTAATAATGTGTGAGGTTCTGATGTAGACCTATTTTAGACACTTGTTAGATATCACAACAGATCCAATTCTGGAATATTTGTACAAATTAAGATTTCATAAGATTTGACAGCGGCTAAAAGCCATTTTATGTTTTAGTTATTTTTTTTCCGCTGTCAGACTAATTTGACAAATGTTGGGAATGTAATGTTTATTAATGGTCGAGTAAGGAAGTGACTGAACAGGTGAGTGTTGGAAGGAACATTTTTGTCAGGTTTTATAAAACATGTTCTCTTTCAGTCTGGTCTCCTACTGAGGGGACGTGATTCCATTGTGATAATTATAATGGAAGGGATGAGTTTGTCTTTCTGGGCTATATGCCTGACTCAAGTAATATTACATGTATGACTAATCATATGgttattttcaacattttgattgtTTAAATTACCAACAGTCTCATTGTGACAGAACATACTGTAAGTGAAACATATAAAAtggttttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactttccttTTTAGTATGCTGATATTTAAGTGGAGATGTCAGAAGGCTCAATTTGACTTGAAAGACAGGTAAGAGTGCAGACATTTTGTGAAATGATTGGGGTGTTAGATGCGTATACCGTttagttctttttttttttttttttacctgtttcaGGGAACCAGAACTTTTTATCTTGACCTCAGTCTCAAATTAGTTTTGTATAATTGTATCCATTTTTGTTAGTATTTTATGTTCTGATTTTCACCCATTACATCTTTCAAAATGTTTAAAATTCCTCACCAGAGCAATGTGTAAATACATTGCTGTGAAGTTCCATGTTAGTTCATACTAGGTGTTAAATTCCTGGGCATGACTTTCCTTTAAACTATAAATGAAAACCACTGGCTTTGTAAAAACGGGCCGAATTCAATATTCCCCAATGAACCATGTTTTAAAATAAAAGGATATggttaaaatgtt

Function

NR:

description
peptidyl-prolyl cis-trans isomerase G-like

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K01802 E5.2.1.8; peptidylprolyl isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597127.2 False 3385 mRNA 0.42 13 49052384 49057523
XM_036974383.1 True 3260 mRNA 0.42 12 49052432 49057523

Neighbor

gene id symbol gene type direction distance location
LOC110520088 LOC106586209 coding upstream 6381 49043334 ~ 49046003 (+)
LOC110520086 LOC106586207 coding upstream 17181 48995197 ~ 49035203 (+)
rdh3 rdh3 coding upstream 153897 48891513 ~ 48898487 (+)
LOC110520084 g6pc2 coding upstream 176141 48872108 ~ 48876243 (+)
LOC110520083 LOC106586203 coding upstream 195339 48826435 ~ 48857045 (+)
LOC110520091 LOC106586211 coding downstream 4962 49062485 ~ 49070285 (+)
LOC110520093 LOC106586213 coding downstream 17570 49075093 ~ 49079255 (+)
ubr3 LOC100380624 coding downstream 31190 49088713 ~ 49134170 (+)
myo3b myo3b coding downstream 78348 49135871 ~ 49249252 (+)
LOC110520096 LOC106586217 coding downstream 197827 49255350 ~ 49257633 (+)
G267069 NA non-coding upstream 65532 48986650 ~ 48986852 (+)
G267031 LOC106586206 non-coding upstream 116902 48934753 ~ 48935482 (+)
G266941 NA non-coding upstream 271882 48777515 ~ 48780502 (+)
G266938 NA non-coding upstream 277441 48774578 ~ 48774943 (+)
LOC110520080 LOC106581709 non-coding upstream 385269 48645110 ~ 48667115 (+)
G267190 NA non-coding downstream 146539 49204062 ~ 49204683 (+)
G267215 NA non-coding downstream 191910 49249433 ~ 49249614 (+)
G267214 NA non-coding downstream 193260 49250783 ~ 49251132 (+)
G267217 NA non-coding downstream 196430 49253953 ~ 49254214 (+)
LOC110520046 LOC106586167 other upstream 2220140 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 2867580 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 2972959 46075484 ~ 46079425 (+)
G263710 NA other upstream 3117966 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 3212904 45838921 ~ 45839480 (+)
G267358 NA other downstream 453280 49510803 ~ 49512475 (+)
G267381 NA other downstream 496975 49554498 ~ 49555838 (+)
G267529 NA other downstream 779094 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 1104778 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 1544779 50601983 ~ 50618761 (+)

Expression


Co-expression Network