LOC110520086 (LOC106586207)


Basic Information

Item Value
gene id LOC110520086
gene name LOC106586207
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48995197 ~ 49035203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597124.2
GTAGGGAGAGGCTCAGAGGCTCACAGACACACTGTGCCTCAGGATGGCTATCATTGTTGCTATTGCTGCTACACACTCTGGGAACTAACTAGAATCTTCCATCACTGCTGTTCTTCTCTCGCTACCTGCACAACCCCAGCATTTTGGAACATTGCACTTAGTGGGGCACAAGGATACCTGGATCTGCAGCACAAAAAAAAGGGTTTTGGATTGAGGGACAATGATGTTCCCTACAGTGACATGGCTCCTGTTTGTAGCAGGCCTGTTGGGTGTCTGGTCTCAGGACTACTATGAGGAGAGAACAATGAACAAGAGACCCAGAAGCAGGGGGGCCCAGCTGCGAGCTGCAGCCGCAGCCACTGCACCTGACGGGCAAAAACATAATAGACAAGCTCTGCACATGAACACAGCCATTTTAGATGAGGACTGCGGTCTGGAGCTTTCATTTCTGCTTGACAGCTCTGAGAGTGCCAAGGAGAACCATGAGCAGGAGAAGCACTTTGCCATGGATGTGGTGGACAAGCTCCAGGCTGTCCGTCTGCAGACCGGGCGCAGTCTGAGCTGGAAGGTGGCCCTGCTGCAGTACAGCAGTCACGTCATCATCGAGCAGACCTTTAATCAGTGGAGAGGTACTGACAACTTCAAGTCCCACATCACCCCCATTTTATACATCGGTCACGGCACCTACACCACCTACGCGATCACCAACATGACTAAGATGTACCTGGAGGAGTCCAGCCCAGGCAGCATCAAGGTGGCCGTCCTACTCAGTGACGGCATCTCCCACCCCAGGAACCCAGACATCTTCTCAGCTGCCGCCGACGCCAAGAACCAGGGGGTGAAGTTCTTCACGGTGGGCATCACCCGTGCAGCCAATGAGCCAGCCAATGTGGCCCAGCTCCGTCTGCTGGCCAGCTCTCCTGCTTCCCGATACCTCCACAATCTACAGGATACTGATATTGTGGAGAAAGTCCTCACAGAAATTACTGACCTGGCTGACAAGGGGTGTCCCCTGGCCCAACGATGTGCCTGTGAGAAGGGCGAGAGAGGGCTCAGTGGTCCAACTGGGAAGAAGGGTCGCCCAGGAGATGATGGAGCCCCTGGTCTTAAAGGATTGAAGGGAGAGGGAGGACTAAGTGGACTTCCAGGTCGGGATGGCGGAGAGGGAAAACCTGGTTACAAAGGAGAGATGGGTGAGAGGGGCGAGTGTGGCATTCCAGGAATTAAAGGAGACAGGGGTCCTGAGGGTCCAATGGGCTCCAGAGGTGTCAGAGGTCTCCAGGGTTTACCCGGACCACAGGGTGACATGGGACCTGAGGGCCCTCAAGGAAAGAAGGGTGACCGCGGTCTAACTGGGCCGCCCGGAATTCAGGGAGAAACTGGTATTGGACTTCCTGGACCAAAGGGTGATCTGGGATTCCAGGGAAGACTCGGCCCCCCTGGTCCGCCAGGGCTGGGTGAACATGGCCAGCCAGGGCCTCAAGGGCCACAAGGTGTTCAAGGGGAGAAAGGACCCCATGGCGAGGGGCTCCCTGGACCAAAGGGAGACCGGGGGCTGGACGGACCGAGGGGGCCGAGAGGACAGACGGGTGCAGGAATCAAAGGAGAAAAGGGTGAGTTCGGGCCTCCAGGTCATCCAGGACTTGTTGGACTTACAGGAGCGGGCATCCAGGGGGAGAAGGGAGTGGAGGGTCCCAGGGGTCCACCTGGCGGCAGAGGGACACAAGGAGAGGGCTTACCTGGACCTAAGGGCGATCAAGGTTTACCAGGAGAGCTTGGAGTTACAGGGGAAAGAGGTGTTGGTGAGCCAGGGCCAAAGGGTGAGCCTGGTGCATATGGCCTGGCTGGCTTACCTGGTCTTCCAGGAGAGGACGGGGCTCCAGGACAGAAGGGTGAGTTTGGTATCGCTGGCCTCAGAGGTTCTGAGGGTGCAGCAGGGATCGGCATCCAGGGCGAGAAGGGAGATCAGGGTCAGAGGGGCATCCGTGGATTACATGGACCTTCTGGCATGACCGGACCCTCAGGGGCAAAGGGAGAGCCTGGCACACCGGGCAGACTGGGCATGTCAGGACTACCGGGACGGGCCATTGCAGGTCCTAAGGGTGATCTAggccctcctggtctgtctgggcCTATTGGAGAGACAGGCTATGGGCTGCCTGGGCCGAAGGGCGACCGCGGTAATTCTGGTCCACCAGGTCAATTTGGGCCCAAAGGTGAAGGTTTCCCTGGACCAGTGGGTCCTCCAGGTCTTCCGGGTCTACAGGGAGAGCAGGGCCCTGAGGGCGTTGGCATCCCAGGACCTAAGGGAGACATTGGCTTCAGAGGATTGCCAGGTTTGCCAGGCCCAATGGGAGAGGGTGTGCAAGGACCACCGGGTAACATTGGAAGGCCAGGACCCCTTGGTCCAACAGGGCCACCAGGAGAAGGTCTGCAGGGCCCCAAGGGTGGGCAGGGGTCTCAGGGTGTGACAGGGCCAAGGGGACCCTCAGGGGAAGGATTCCCAGGAGCTAAGGGCGACCGTGGcttgcagggggagagaggaaataAGGGCGGAAAGGGAGATCTGGGAGATCATGGGGTTCATGGAGAGTCTGGGAGACCAGGAATAAAAGGTGAAGCCGGCCTTACAAGAGAAGACATCATTAAATTGATCAAGGAAATCTGTGGATGTGGAGTGAAGTGCAAGGAGATGCCAATGGAACTTGTATTCGTCATTGACAGCTCAGAGAGTGTTGGTCCGGAAAACTTTGAAATTATCAAGGACTTTGTCACAGCGTTGGTAGACCGTACCACTGTTGGACGTAACACCACCAGAATTGGACTGGTCCTGTACAGTCTGGATGTCAAACTGGAGTTCAACCTGGCACGCTACATGACCAAGCAGGATGTTAAGGAGGCCATCAGGAAAATGCCCTACATGGGTGAGGGCACCTACACTGGCACTGCCATCCGGAAGGCTACCCAAGAAGCCTTCTACAGTGCCCGTACTGGAGTCAGGAAGGTGGCCATTGTCAtcacagatggaaagacagacaAACGAGAGCCTGTGAAGCTAGACATTGCTGTGAGGGAGGCCCATGCTGCCAACATTGAGATGTATGCCCTGGGGATTGTTAACACCTCAGATACAACCCAGGCCGAGTTCCTCCGTGAGCTCAATCTGATCGCCTCGGACCCTGACAATGAACATATGTACCTCATCGACGACTTTAACACTCTACCAGCTCTGGAGTCAAAACTTGTTAGCCAGTTCTGTGAGGATGAGAATGGAGCCCTTGTGATGAATCGCATCGCTAATGGCTTTGGAACCAATGTGAACAATGGCTATGGGAACCACAGATATGTACCGGAAGCCTATGGGAATAACGGCCTTGGGAATAACGGCTATGTGGACAGCAGCTATGGAAACACCTATCATGAGGATCCTATCCTAAATCCTAGCAGACGCACCAGTTCCCAGAGTTACATCAGAGGCCGTGGAGATACCTTTGCCCTGCCCCTCAACGCTGGACCACTCCCATTGCAGgtggaggatgatgaggagggtGAAGATTTAGACATAAGGACCCATGTGCGAGGAGGTATTGTGGCTGTAGTTAACAAGACAGTATCCATCCTCCCTGCAAGGGAAAGATCTCACTCCAACACAACTGTTTCATCGTCATCATCAGGATCAGCATCATCATCCTCCGGAACATTGGGTTCAGCTTCATCCACCAGCTCAGGCCAATTTCGGCCGGTGTCAATTCCTAATAATATTTTCCCCCAAGAGTCTGTCCAGCTTGATTCCCGCTGTAAGCTGAGTTTGGACCAAGGCACCTGTCGGGAGTATAAAATCCGGTGGTATTATGACAAACAGGCCAATTCATGTGCACAGTTCTGGTATGGTGGCTGTGAAGGAAATGCCAACCGCTTTGAGACCGAGGATGAATGCAAGAAGATCTGTGTTCTATCTAGGACAGCTGGTTAAAACAGGCAGATGATCAATCAACTCATCTGTACAATATTCCATGGAAACCAACCAAAGTGGAAGAGAGAATTTTAATATTTAACATGTAATAGTCTACTACTGTTATCTAATTATATTTTAAAACAGGCATTTATCATTGGTGAAAAACTCCACTTTGCATCGCTCTCTGGGGAAAAAAACTAAACtttgcatctctctctcgctctcgtgcAAAGAATGAGGGACAGACTTCAAGATTTCATGAAGTTGCCTTAATTTTCAGATTTTTTACAATCTGAACAACACCTTCCTTAATGAACAAGTCTTTATGATGACTTTATTTGAGGAAGTCTGAATTTGAAGAAAATATAAGGGTGCTATGTTATTTTACTACATTAGAAAAGTGGTCCTACCTTACTCTCGTTATTTTGCAGAATTAACAAATCCATTCAATGCCTCAATGTTACTCAACATTACCTTCGGACTTAGGCTGTTCTGAACAGAGAGGATAGGTTCAAACCCAGATTTTGCCATTTCAGTTTTACATGAGTAAACATCACACAATGTAAATTCTCAAACCACTGAGCCAAGCACATTATGCTGTTCTACACTGAATATTGTCTTTTAATATTGGAATAGAGAACTATAGAATTCCTCATTTTTGTAGTATATGttttgaatttaaaaaatgaattaagCAAACTAAATTAAGTAGGTGTGGTCATTATTTTTATTGTTTGTTTAATGATATTCCATTTTGGTGATATAGGCCATAAGTGACAGTATGCAATTTACTAAGCATTATTCTTCCAAAACGTTTTGGAAAATGTGATGATTGGAAATTGCACATCACTGTTGATGAAAAAAGCTAATTTGAAATAAATGaccacattttttgttgttgactggCTTGATGATTGAtgatttttgtatttgtttttattaatAAAACGTTGAATGTG

Function

NR:

description
collagen alpha-1(XXVIII) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597124.2 True 4914 mRNA 0.51 36 48995197 49035203

Neighbor

gene id symbol gene type direction distance location
rdh3 rdh3 coding upstream 96710 48891513 ~ 48898487 (+)
LOC110520084 g6pc2 coding upstream 118954 48872108 ~ 48876243 (+)
LOC110520083 LOC106586203 coding upstream 138152 48826435 ~ 48857045 (+)
LOC110520081 LOC106581793 coding upstream 199925 48672040 ~ 48795272 (+)
LOC110520080 LOC106581709 coding upstream 328111 48645110 ~ 48667115 (+)
LOC110520088 LOC106586209 coding downstream 8131 49043334 ~ 49046003 (+)
LOC110520090 LOC106586208 coding downstream 17181 49052384 ~ 49057523 (+)
LOC110520091 LOC106586211 coding downstream 27282 49062485 ~ 49070285 (+)
LOC110520093 LOC106586213 coding downstream 39890 49075093 ~ 49079255 (+)
ubr3 LOC100380624 coding downstream 53510 49088713 ~ 49134170 (+)
G267069 NA non-coding upstream 8345 48986650 ~ 48986852 (+)
G267031 LOC106586206 non-coding upstream 59715 48934753 ~ 48935482 (+)
G266941 NA non-coding upstream 214695 48777515 ~ 48780502 (+)
G266938 NA non-coding upstream 220254 48774578 ~ 48774943 (+)
G267190 NA non-coding downstream 168859 49204062 ~ 49204683 (+)
myo3b myo3b non-coding downstream 170675 49135871 ~ 49249252 (+)
G267215 NA non-coding downstream 214230 49249433 ~ 49249614 (+)
G267214 NA non-coding downstream 215580 49250783 ~ 49251132 (+)
G267217 NA non-coding downstream 218750 49253953 ~ 49254214 (+)
LOC110520046 LOC106586167 other upstream 2162953 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 2810393 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 2915772 46075484 ~ 46079425 (+)
G263710 NA other upstream 3060779 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 3155717 45838921 ~ 45839480 (+)
G267358 NA other downstream 475600 49510803 ~ 49512475 (+)
G267381 NA other downstream 519295 49554498 ~ 49555838 (+)
G267529 NA other downstream 801414 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 1127098 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 1567099 50601983 ~ 50618761 (+)

Expression


Co-expression Network