rdh3 (rdh3)


Basic Information

Item Value
gene id rdh3
gene name rdh3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48891513 ~ 48898487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581815.2
CGTCTACCATCTATCAAAAAATAGTTGACCAAACCTTCTGACAGAGCAATAGTTCACACACACCGGAAGGTGAATTACACagggaaagaaaaaaaaacgagtCACTGTTGTTACCAGCAACTCAAGGAGCGTACGTTTGTCGCCTGGGAAATGTTCCTGTACATTCTTGGACTGGTGGCTTTTTGGTTTGTGTTCCGCTGGTACAGGGAACTCGCAAGAGTACCCAATAAAGGACAGAAATATGTCTACATCACTGGCTGTGATTCTGGGTTCGGGAACCTTCTGGCCAGACATCTGGACAAGCTGGGCTTCCGTGTGATCGCAGCCTGCTACACTGAGAAGGGGGAGGATGAACTGAAGAAGGTCTCTACTGAACGATTGAACACAGTCCACCTGGATGTCGTCAGCACTGACAGTGTCAGCAAAGCAACAGCATTCATCAAAACCTTGGTTGGGGAGAAGGGTCTGTGGGCTGTGGTGAACAATGCTGGAGTCTCTGTACCATCTGGTCCTTGTGATTGGATGACCGTCGACGACTACAAGTCCATGTTGGATGTTAACCTTATTGGAGTCATTGGTGTGACTCTGAGTGTCCTGCCCCTCATCAAGAAGGCCAGGGGCAGGGTGGTGAATGTGGCCAGTGTGTTTGGGAGGATAAGCGCCTTCGGGGGACCCTACTGTGTGTCAAAATATGGAGTGGAGGCTTTCAATGATAGTCTACGGATGAACATGTCGTTTTTTGGAGTTAAAGTCCTGTGTCTGGAACCAGGATTTTTCAAAACAAGTGTGACTGATCTACATCTCCTGAGAAAAAATGTGAAGACATTGTGGGACAAATTGCCTGAAGAAATCAAGGATCAATATGGACATGATTACCCAGAGAGAGAATGACAAACACTCCAAGAACGAATTGACAAGGATTGCCCAGAGCAAGTGAACTGAGCAGTCAGGCAAGTTCAacctgcctgcctttgacctagACCTCAAACAGTCAGACATACAATTTCTTCATTGTGTTCCAAGATGTTGAAATCAGCTTGTTGATGGAGGCAAATCCTTTCTTCCAGCAAATGTTACATTGGAGAAGAATGTTGCGACGTTGCTGGATGGGGACCTAATGAAGGTTGTGAGCTGCATGGAGCACGCCATCTCTGCTGTCCACCCTCGTACCCGCTACTCACCTGGCTGGGATGCCAAGTTCTTATGGTTGCCTATGTCCTACCTGCCAACGTGGA
>NM_001165081.2
ACACagggaaagaaaaaaaaacgagtCACTGTTGTTACCAGCAACTCAAGGAGCGTACGTTTGTCGCCTGGGAAATGTTCCTGTACATTCTTGGACTGGTGGCTTTTTGGTTTGTGTTCCGCTGGTACAGGGAACTCGCAAGAGTACCCAATAAAGGACAGAAATATGTCTACATCACTGGCTGTGATTCTGGGTTCGGGAACCTTCTGGCCAGACATCTGGACAAGCTGGGCTTCCGTGTGATCGCAGCCTGCTACACTGAGAAGGGGGAGGATGAACTGAAGAAGGTCTCTACTGAACGATTGAACACAGTCCACCTGGATGTCGTCAGCACTGACAGTGTCAGCAAAGCAACAGCATTCATCAAAACCTTGGTTGGGGAGAAGGGTCTGTGGGCTGTGGTGAACAATGCTGGAGTCTCTGTACCATCTGGTCCTTGTGATTGGATGACCGTCGACGACTACAAGTCCATGTTGGATGTTAACCTTATTGGAGTCATTGGTGTGACTCTGAGTGTCCTGCCCCTCATCAAGAAGGCCAGGGGCAGGGTGGTGAATGTGGCCAGTGTGTTTGGGAGGATAAGCGCCTTCGGGGGACCCTACTGTGTGTCAAAATATGGAGTGGAGGCTTTCAATGATAGTCTACGGATGAACATGTCGTTTTTTGGAGTTAAAGTCCTGTGTCTGGAACCAGGATTTTTCAAAACAAGTGTGACTGATCTACATCTCCTGAGAAAAAATGTGAAGACATTGTGGGACAAATTGCCTGAAGAAATCAAGGATCAATATGGACATGATTACCCAGAGAGAGCAAATGTTACATTGGAGAAGAATGTTGCGACGTTGCTGGATGGGGACCTAATGAAGGTTGTGAGCTGCATGGAGCACGCCATCTCTGCTGTCCACCCTCGTACCCGCTACTCACCTGGCTGGGATGCCAAGTTCTTATGGTTGCCTATGTCCTACCTGCCAACGTGGATCGCAGACAAAATGCTCTTAAAAGATATGGCCAAACCAACAGGATCTATTCTTTAATGTTAATGGTTCTCTGACCGAATGTAGGAGGAAGTCTTTATTTACACCcacaggagaagaagaaaaatgtAAATGGAATAAGTGTATAGCATGGGATTCAACCAATGAATGGGGAAAAAAAGAACACTAATTTGTTTTCAAACTTAAACATAGTTGTGAATTGCATTTTGTCTAATCACATTTGGATTTGTCCTGTCTGTTTCCCTGGTCTGATAATAAAACCAATGGAGAGATTTTCAGTAATTCAAATGAAGCGGTGGTTGCATTGAGTCCATTTGATACATACAGTAAGTGATATTCTGTCTCTGTTAGAACTATTAGCTTGTACCCTAGCTCACTGTATGACTTACAGCAAATTCTTCCTATCAAAAAGCAAACTCTTACAGTGCAAGAAATTCCTGATCAAAATATGTTTACTCTGATAAACCTGTGACTTGCTACCATTAATTCCAACTAAAGGAATCAGAAATAATTATTGC

Function

NR:

description
retinol dehydrogenase 3-like isoform X1

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0001501 skeletal system development biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0042572 retinol metabolic process biological_process
GO:0042574 retinal metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0035138 pectoral fin morphogenesis biological_process
GO:0004745 retinol dehydrogenase activity molecular_function

KEGG:

id description
K11154 RDH16; retinol dehydrogenase 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581815.2 False 1235 mRNA 0.48 5 48891513 48897952
NM_001165081.2 True 1513 mRNA 0.44 5 48891589 48898487

Neighbor

gene id symbol gene type direction distance location
LOC110520084 g6pc2 coding upstream 15270 48872108 ~ 48876243 (+)
LOC110520083 LOC106586203 coding upstream 34468 48826435 ~ 48857045 (+)
LOC110520081 LOC106581793 coding upstream 96241 48672040 ~ 48795272 (+)
LOC110520080 LOC106581709 coding upstream 224427 48645110 ~ 48667115 (+)
LOC110520076 LOC106586200 coding upstream 313674 48562651 ~ 48577839 (+)
LOC110520086 LOC106586207 coding downstream 96710 48995197 ~ 49035203 (+)
LOC110520088 LOC106586209 coding downstream 144847 49043334 ~ 49046003 (+)
LOC110520090 LOC106586208 coding downstream 153897 49052384 ~ 49057523 (+)
LOC110520091 LOC106586211 coding downstream 163998 49062485 ~ 49070285 (+)
LOC110520093 LOC106586213 coding downstream 176606 49075093 ~ 49079255 (+)
G266941 NA non-coding upstream 111011 48777515 ~ 48780502 (+)
G266938 NA non-coding upstream 116570 48774578 ~ 48774943 (+)
G266831 NA non-coding upstream 330329 48560970 ~ 48561184 (+)
G266822 NA non-coding upstream 339242 48551932 ~ 48552271 (+)
G267031 LOC106586206 non-coding downstream 36266 48934753 ~ 48935482 (+)
G267069 NA non-coding downstream 88163 48986650 ~ 48986852 (+)
G267190 NA non-coding downstream 305575 49204062 ~ 49204683 (+)
myo3b myo3b non-coding downstream 307391 49135871 ~ 49249252 (+)
G267215 NA non-coding downstream 350946 49249433 ~ 49249614 (+)
LOC110520046 LOC106586167 other upstream 2059269 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 2706709 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 2812088 46075484 ~ 46079425 (+)
G263710 NA other upstream 2957095 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 3052033 45838921 ~ 45839480 (+)
G267358 NA other downstream 612316 49510803 ~ 49512475 (+)
G267381 NA other downstream 656011 49554498 ~ 49555838 (+)
G267529 NA other downstream 938130 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 1263814 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 1703815 50601983 ~ 50618761 (+)

Expression


Co-expression Network