LOC110520076 (LOC106586200)


Basic Information

Item Value
gene id LOC110520076
gene name LOC106586200
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48562651 ~ 48577839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974360.1
agacatGGTGAATTGTGTCACTTGTTGATCCTACTTGACAAGACTCCTAACTGGGCACCGGAGTATTCCTCCCCCGAATGGCTACCGCGTCCACGTATTTTCTTTACCCCCTCAAGCATCGGACACTTTATGAATACCATCTGCCAGGGTGACTTGGCAAACAGGAATATGTTGGGATATGTCGCAGAGGGTCCAAAATGTTCGGCGAGTGGCACATTTTCAGTCATTCCTTTTCTTCAGGCTAAAAACTTAAGCTTGGGACTTTGATTCTAGTGTAAACCGCAACGTTAAACGTACGAGCCTGTCGTGTAATGCTCTTTACTGAGCCATCTGATAAGTTATTCTGTAGCTACCGGTTTTGCTTGAATATTTGACCATTCAATATTTGACCGACAGTTCGCTCTCTTATTGTATGACTATACATAACATTATCTAGCATAGCTCAAATTAATATACAGCTATGCTCATTTATTTCTGAAGGGTAGACCTATACCGCGTCTTATGTAGGCGACATTCTGTTATTCTTCTAAGTAGCCTGATTGGATGCGGTGCTTATGAGAGAGGTATAGGATACGTTCCTCCGCTATTTGTAACCCAGCAACCGTCTCAATGAATGGCTGGCTGAACAAATCCTATTATTTTAAGAATTGACACCATTATTAGATCAGACCTATCCCGCAGAGTCGACTATTTCCAATATTGCCTGAGACAAAGTGACTGCAAgataatactttttttattttttttatttggggCACACGGAGAGGTCTAGCTTTGTAGCTGGAGTAAGTCAAAGTGAGTTTTGCAACTGACACAAATAGACGCATACTTTATGTGCCAAATGACAAATTCATAATTTGTTCTCAGAATGCCTGCTGCTTTGCAATGTTTCACTCGTAATAATTGCATGGCTTTGGGGTTTGACAGAAAGATCTGTTCTACGTACACGTGCCAACTAAAAAGGGTTCCACCCTCTACCTGAAAGGAGCGCACCTGGATCCAACGAGACGGAAGTAGTTTGTAGAGATTGAGAAACGCTCCACAACTGACTCTATTCTTTTGGGGCAACAATTTATCTGGAAATCCGCATATTTTGAAGAGGATTTTCTTTTAGCGATATTCTTGACATAACTTAATTGACTTTTTTTCATCAAGGGTTTGGATTGCAGTTCCCATCCTTATTATGTAATGTCCAGGTTACCTCCTTGCAACTGACTGTGTGTTTGGTGAAGTGCTGTGTCAAATAAATCTACCCCACCCATCTCCAGAAGAATGAGTGGTCTCCGCAGAGTTTTCCGAAGGCGATTACACCCCTTGAAACTGGTGATAGTGGCCCTTATCTTTGTCACATTTTTGTTCCTTATACAACGTGAGGTAGTAAGCCAAAGTCCCACACAAGAAGAGCCCTGGCTGAAGGAGATAGCTGTCAAGCGGGATGCCGTGCTGGGCATGGTGATGGGGGCAGTTAATAACTTCAGGGACGCAATGCCAAAAATGCAGATCAGAGCCCCAGTGCGCCAGCAGGAGACTGCAGGGGACTTTTCCTGTTTGTCAGGGACGTACACGGCTGCTGAGCTGAGGCCAGTCCTAGAGCGTCCACCACAGGACCCCAACGACCCCGGAGCCTCTGGGAAGCCCTTTCACACAGACAAACTGAGCCCTGCTGAACAGAAGGAGAAGGATCGGGGAGAGGAGAAACACTGCTTTAACCTCTACGCCAGCGACCACATCTCTCTCAGCCGTGACCTGGGCCCTGACACCAGACCACCGGAATGTATCGAGCAAACATTCAAGCGTTGTCCACCCTTGCTGACCACCAGCGTGATCATTGTGTTTCACAACGAAGGTTGGAGCACTCTGCTGAGGACGGTGTACAGCGTCCTCCACACCTCCCCTGCCATCTTCCTCAAGGAGATCATCCTGGTGGACGATGCCAGTGTGGACGATGCATTGAAGGAGGAGCTGGATGAGTATTTGAAGCGGCTGCACATTGTGCGCGTGGTACGTCAGCGCGAGAGAAAGGGCCTGATCACTGCTCGGCTGCTGGGAGCCTCTGTGGCCACTGGAGACATCCTCACCTTCCTCGATgctcactGTGAATGCTTCAATGGCTGGCTGGAGCCTCTACTGGCCAGGATAGCAGAGAACTACACTGCGGTAGTGAGTCCTGACATCACAACCATTGACCTCAACACCTTTGAGTTTATGAAGCCCTCGCCATACGGACAGAACCACAACCGTGGTAACTTTGACTGGGGCCTGTCCTTTGGCTGGGAGAGTCTaccggaccatgagaaacaacggAGAAAGGATGAGACTTATCCTATCAAGACACCAACTTTCGCTGGGGGACTCTTCTCTATCTCCAAGGACTACTTCTATCTTATCGGAAGCTATGATGAGCAAATGGAAATCTGGGGAGGCGAGAATATCGAAATGTCTTTCAGAgTGTGGCAGTGTGGGGGTCAGCTAGAAATAATCCCTTGCTCCATCGTGGGTCATGTGTTCCGCACCAAGAGTCCGCACACCTTCCCCAAGGGCACCCAGGTGATCGCACGCAACCAGGTGCGGCTGGCCGAGGTCTGGATGGATGACTACAAGGAAATCTTCTACCGACGCAACCAACAAGCTGCACAGCTGGCCAAAGACAGGGCCTTCGGAGACGTCGCGCAGCGTGTGGACCTCCGGGAGCGGCTGCAGTGCAAGAGCTTCTCCTGGTATTTGAAGAACGTGTATCCAGAGGTCTTCATGCCCGATCTCAACCCACTCCACTTTGGCTCGGTGAAGAATGTAGGTAAAGACTCGTGTCTGGATGCAGGGGAGAACAACGAGGGAGGGAAGCGGCTGATCTTGTATCCATGCCACGGACTCGGAGGAAACCAGTATTTTGAGTACTCGACCCATCACGAGATCCGGCACAATATTCAGAAGGAGCTGTGTTTGCATGGGACAGAGGCAGAcgtgaagctggaagactgccAGTATAAAGGCCGCATCACATTTGTAGGAGCAGAACAGAAGTGGGAGTTAAGGGAGAACCAGTTATTCTTCATCCCGGGATGGAATCTGTGTCTGAGTGCCCGTCATGAGCACCCCTCCTTGGTTGCCTGTAACCCCTCAGACAGATACCAACTGTGGCTCTTTGTCTGAGGACATGACACATGGACCTCGGCACTAGTGATGACGTGTGCCTGGGCATTCTAGGACCTTTTAGAACAAGTAGCAATTGGCGTGCATTTTTAAACATATTATCAAATTgaatgtgtatttatttttaaatgtagaaGAACTGCTGCTGGAAAGTTGGGGATTTTGAGGAGAATATGCAACCTCGGGAAGGAAGCGTTCAAACTGATACTGAAGACTTAaaaaggaatacacttttttatttttatcacaGTTCGGGTTAAGGGATTATTTTTCTTCTGCCATTCAAGACAACCGCTGCTTGTGGATTGACGGCACTACCTGGGACTGAAATTAGTGACTTTGGATGGGTACTTAATGAAGAGATTTCCACTTGTCTTTGTCTCTTCTGTTTCTGTCTTACTCCAGAGGGAAATCGACGTTCCATTTGATTGTATTTAATTACAAAGGCTTGTTCTTTATTGCCTACACTGAATAATTTATTAATGCAGTAGATATGTGAAAACCAACAACAAAATGGAGTCTCAAACAATGCAATAGTGAACGTGCCTTTTGCATGAACAGAATAACTAAGATTGTATGCACCAAAGACTCGTCAAGGGTTACTTTTGTATTAAAAGAAATGTTTGTATTATAGGTTATTCAATATCTACCACTACTGCCTCTTTTTGTTATGCAAAGTAATTATATCAGGAAGGTACTAGACATGCATTCTCCCTTACCACCGCTATAGGGTCTGATTCCCCTCTCACCCAGCTGGTTTTCCTCACAAGACGATTGAGGATCAGAGGCACTGTCCATACAGTGCCTCTGGTTatcttatgtatatactgtactttatgAACAGCTAATTATGATTTAAATGTAAATTCTCCAAAGTTGCATTTTAACCAATGGGCTTGAGTTGTGTGCTACTGTTATATTTGGCATCCCAAATTCATAATGATCTGGTATTTGCAAGATGAGTCATCTTTTCTTTTGCTTTTCCGTATTGCTTTGACGGGGCGTTCAGAGGTGTTTTTAATCATAAGTATGTTTACCTTTCTGGGACAGGCTTTAGTAACGTAACATTTTCAAACACAATTCCAGTCACAGAGGTGGTATTTGAAACAATCTGTTGTGTACAGTTTGActgcacccccccaaaaaatgtaactTTATATCTCTACAAGAATAGCTGGATTTTTCTTGGGGCCCCAGCCCCCAGGTACTTTAAGCAAAGTAAACTGTTTTAGATGTCAGGGAATAATGTAAGGTTGACACATCTTAACAAGAGGTACTTTTGGATAGTTTAGTTCTTTGTAATGTCTTTTTCTATGCTTGACAACGCATTTAGAAAAATATTTTTCTTTAGAATAAAATGCATTTACATGTTTTTGTATAATGTTCATGGGGATTGCAAATGTTTTTTAATATGTAGGCTAAAATGGGATCTGAAGAAAGGGAAACATTTTAAGCTTTGTTTACAACATGGAACTATGATTGTAGTTTTGATTCAAGTCTGAGTTCCCAGTATCCCACAGTATCCTTGTTTGATCCAAGGATGTGGGATAGATTTGTATAAACTGTTTGTGTCAGTGTTAACTGACAATGGAATGTTAGAATTTTGTTGAATTTAGGGATATGCCTGGTCCTAGAACCGAATGCCCTCGTGACTGACTCTTCTA

Function

NR:

description
polypeptide N-acetylgalactosaminyltransferase 3-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974360.1 True 4814 mRNA 0.45 11 48562651 48577839

Neighbor

gene id symbol gene type direction distance location
LOC110520075 LOC106586196 coding upstream 53812 48455210 ~ 48508839 (+)
LOC118958193 NA coding upstream 532954 48028238 ~ 48029697 (+)
LOC110520067 LOC106586186 coding upstream 535566 47981052 ~ 48027085 (+)
LOC110520066 LOC106586185 coding upstream 585813 47971973 ~ 47976838 (+)
LOC110520065 LOC106586184 coding upstream 614623 47929321 ~ 47948028 (+)
LOC110520080 LOC106581709 coding downstream 67271 48645110 ~ 48667115 (+)
LOC110520081 LOC106581793 coding downstream 94201 48672040 ~ 48795272 (+)
LOC110520083 LOC106586203 coding downstream 248596 48826435 ~ 48857045 (+)
LOC110520084 g6pc2 coding downstream 294269 48872108 ~ 48876243 (+)
rdh3 rdh3 coding downstream 313674 48891513 ~ 48898487 (+)
G266831 NA non-coding upstream 1467 48560970 ~ 48561184 (+)
G266822 NA non-coding upstream 10380 48551932 ~ 48552271 (+)
LOC110504158 LOC106903880 non-coding upstream 12708 48542999 ~ 48563667 (+)
G266699 NA non-coding upstream 169129 48376214 ~ 48393522 (+)
G266690 NA non-coding upstream 193700 48368550 ~ 48368951 (+)
G266938 NA non-coding downstream 196739 48774578 ~ 48774943 (+)
G266941 NA non-coding downstream 199676 48777515 ~ 48780502 (+)
G267031 LOC106586206 non-coding downstream 356914 48934753 ~ 48935482 (+)
G267069 NA non-coding downstream 408811 48986650 ~ 48986852 (+)
LOC110520046 LOC106586167 other upstream 1730407 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 2377847 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 2483226 46075484 ~ 46079425 (+)
G263710 NA other upstream 2628233 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 2723171 45838921 ~ 45839480 (+)
G267358 NA other downstream 932964 49510803 ~ 49512475 (+)
G267381 NA other downstream 976659 49554498 ~ 49555838 (+)
G267529 NA other downstream 1258778 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 1584462 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 2024463 50601983 ~ 50618761 (+)

Expression


Co-expression Network