LOC110504158 (LOC106903880)


Basic Information

Item Value
gene id LOC110504158
gene name LOC106903880
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48542999 ~ 48563667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110504158
CGGCGGTGGTTGTCAAGTAAACGAAAGACGCTAACTAGTTTTTGTAAAATGGCGAAAATGTAGCTAGAATTGGTTGTATCTAGCCTTTTGATTGTTAAGGTGGCTGCGGTATTCAGTGAAGACTTTTACCATCTACTTCATTGCTGCTGTTATAAGTGAAACATGGTCATGGCAGAAACAGAGGATGAAGAGTCAACTCTGGTAAATTGACGTGTTGCACCGTAGCTAATTCTCTATTCACTGATTGAGATATGTCACAAAAGTAACCGAGGTAAAAACCAGTTTCAAGTTGGATATTCGACGGATATTCGCTCTAGTCATGTATCTTCTATATTGTTGTATATTAATATTAGTTTGAAAATTAGGGGGTTCAGTCCAGTGTTGTTAACCCTTTTCTTGAATATTTATCTATAATAATTGGTTGTTCTAAGTACTTACTTTCCCTTTTTTACAATTTTGCCACTGTATTTAACAGCAGTAcacaataggagagagacagataatatcTCCTTTCATCGTTAATATCAATCATAAAGGAAAAGGGAAAAATTCAAGACTCATGCTATTAATTGTCTaaagcagggatggagagtgagctagtGAGGTAGGCTGCAGTGGGTTAGCTggtcaatacatatactgaacatgtAACCACAGTAATGGTGGCCAGAAAATCAATGAATAAAAATTGAAATTTGACTAATTAAacagaaattgtagacctgtaaTCTTTTCCAACATGTCAACAGACACTTACCTTCAAATAAGTACAAAACATTTCAGTGTTAActttctctttatccctggttgatgtacatttcagagcctcttcagtgtggatggggtATAACATACACTTTCAACAACAAAGACAGCACTTCCAGTTTGTGTTCTTCACTCTGAACTCTTGTCTTCATTCCTAGGCACAGCACATGGAACCCCCGTTGGCACATTACTATGAGTGTCAACAGAATTACTCCGGAGCTTTGGAGGAAGTCAACCAAGTGACTGTTAGTTTCCCTGGGTTTCTCTCTGCCTTTATTAAGAATATGAAGCTTCTATTGACCCTGTGAGAAAACTGTAGGCGCAGCACAGAGACTCTTGCAGAAGGATAAAAACAACCTGGAAGCCCTGAGAATGCTCACTTTTCCCTCCTTAGGGAGACATCAGAGGGAGACGATCACAGAGTCAGTGAACCAGCTCTCAAATCTCATCAGCAGCTTGGACACCCAAGAGCCTCACAGCCCAGAGCTTTTCTACAGGATGTCCTTCGCTTTCACATGGGTGgaGCTGCTGTACCTGCACGCTGTGCTGGCTGTGAAGAAACACAGGCCACAGGATGATGTCACCAACCCGCTGAACGatgcaGCCTGGGATGTGCAGGCCAAGGTGTTGGAGCAGCCAGACGCCGTCCCCATGCAGAAGCAGCTCGCTGCACAGATCTGTGCCGAGATCGCTAAACACTACACGAGTCTTAGAGGCTATGAGAGCGCAGTGAAATTCTACAAGGAAGCTCTTGTCTATTACAACTACCCAACACTGGCACATCTAATCGACCTGCTGAGGAGATCTGGGAAGTTAGAGGAAGTTCCCAGGTTTCTGGAGATGGCTGAAAAACAATCCTCCAGGGCCAAGTTTGACCCTGGGTTTAactattgcaaactactttatcTGTGGTACACAGGTGAACCCAGTGATGGGTTGCGACACTTCAACAAGGCCTGGAAAGACAACGATTGGGGAACTCAGGAGTCGGAGCAGCTTGCTGTGAGGACGGCAGAGAATCCCCTGAAGGAGTTAAAGCCCCACACAGCCAGTGGACACGTCCAACTACGGATCCTAGAGAACTACTGCTTTCTGGCCACCAAGCAGAAAACCAATGTTGAGAAAGGCCTGAATGTTTTCACAGAGATTGCGAACAATGAGAAGGATCATGTGCCTGCACTGCTAGCCATGGCGACGGCCTACATGATTCTCAAACAAACCCCTCGAGCCAGGAACCAGCTCAAACGCATAGCTAAGATGAACTGGAGCATTGTTGACACTGacgagcttgagaagatctggcTGCTTCTGGCCAACATTTACATCCAGTCAGGGAAATATGACATGGGCGGGGACCTCTTGAAAAGATGTCTTTGCCATAATAAGGTCAATGttggggggtggAAAGATCTGTTCTACGTACACGTGCCAACTAAAAAGGGTTCCACCCTCTACCTGAAAGGAGCGCACCTGGATCCAACGAGACGGAAGTAG
>TU303191
CCCTTTACCATTTGAAAATGGCGGCGGTGGTTGTCAAGTAAACGAAAGACGCTAACTAGTTTTTGTAAAATGGCGAAAATGTAGCTAGAATTGGTTGTATCTAGCCTTTTGATTGTTAAGGTGGCTGCGGTATTCAGTGAAGACTTTTACCATCTACTTCATTGCTGCTGTTATAAGTGAAACATGGTCATGGCAGAAACAGAGGATGAAGAGTCAACTCTGGCACAGCACATGGAACCCCCGTTGGTATGC
>TU303189
GTGTTGGTCATTAATGTGATGTTTCCTACCCCATTCCAGACTCTTGCAGAAGGATAAAAACAACCTGGAAGCCCTGAGAATGCTCACTTTTCCCTCCTTAGGGAGACATCAGAGGGAGACGATCACAGAGTCAGTGAACCAGCTCTCAAATCTCATCAGCAGCTTGGACACCCAAGAGCCTCACAGCCCAGAGCTTTTCTACAGGATGTCCTTCGCTTTCACATGGGTGGTAAGACGTGTTTGATGGTTTGCaa

Function

NR:

description
tetratricopeptide repeat protein 21B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110504158 False 2259 mRNA 0.48 11 48543020 48563667
TU303191 False 252 lncRNA 0.43 2 48542999 48543972
TU303189 True 254 lncRNA 0.48 2 48549554 48549943

Neighbor

gene id symbol gene type direction distance location
LOC110520075 LOC106586196 coding upstream 34181 48455210 ~ 48508839 (+)
LOC118958193 NA coding upstream 513323 48028238 ~ 48029697 (+)
LOC110520067 LOC106586186 coding upstream 515935 47981052 ~ 48027085 (+)
LOC110520066 LOC106586185 coding upstream 566182 47971973 ~ 47976838 (+)
LOC110520065 LOC106586184 coding upstream 594992 47929321 ~ 47948028 (+)
LOC110520080 LOC106581709 coding downstream 81443 48645110 ~ 48667115 (+)
LOC110520081 LOC106581793 coding downstream 108373 48672040 ~ 48795272 (+)
LOC110520083 LOC106586203 coding downstream 262768 48826435 ~ 48857045 (+)
LOC110520084 g6pc2 coding downstream 308441 48872108 ~ 48876243 (+)
rdh3 rdh3 coding downstream 327846 48891513 ~ 48898487 (+)
G266699 NA non-coding upstream 149498 48376214 ~ 48393522 (+)
G266690 NA non-coding upstream 174069 48368550 ~ 48368951 (+)
G266682 NA non-coding upstream 187489 48353412 ~ 48355531 (+)
G266639 NA non-coding upstream 228016 48314795 ~ 48315004 (+)
G266598 NA non-coding upstream 254078 48288741 ~ 48288942 (+)
G266938 NA non-coding downstream 210911 48774578 ~ 48774943 (+)
G266941 NA non-coding downstream 213848 48777515 ~ 48780502 (+)
G267031 LOC106586206 non-coding downstream 371086 48934753 ~ 48935482 (+)
G267069 NA non-coding downstream 422983 48986650 ~ 48986852 (+)
LOC110520046 LOC106586167 other upstream 1710776 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 2358216 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 2463595 46075484 ~ 46079425 (+)
G263710 NA other upstream 2608602 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 2703540 45838921 ~ 45839480 (+)
G267358 NA other downstream 947136 49510803 ~ 49512475 (+)
G267381 NA other downstream 990831 49554498 ~ 49555838 (+)
G267529 NA other downstream 1272950 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 1598634 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 2038635 50601983 ~ 50618761 (+)
LOC110520076 LOC106586200 coding downstream 12708 48562651 ~ 48577839 (+)
G266822 NA non-coding downstream 1989 48551932 ~ 48552271 (+)
G266831 NA non-coding downstream 11027 48560970 ~ 48561184 (+)

Expression


Co-expression Network