LOC110520066 (LOC106586185)


Basic Information

Item Value
gene id LOC110520066
gene name LOC106586185
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47971973 ~ 47976838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597077.2
TATTTGCTCTCTTACTCAAAGTGCCTCAAACCATAGGAAGGCGTTTTTTCGTTTGCTAGATTAGAGTTATTAGGCGTGGACAAAAGCTTACATATAGTTTGCCTTAATAGCGGTTTGTCATTGAGAGCTATGCAGCTCGAGAATTGCATCTTGCCAGTTAGTGTACTATCCAAGAAATGTCTGAATGTGGGCAGTGGCTACCCATGCTCCGATGGATCTGAGCTGCAGGACCATACTATTATATCTGCTAGTGACAACCTGGAGAGAAGTTCACCTCTGAAAAAAAATTCCATGGGGATGACGAATCAGTCAGAGGCAGACAATTTTTCCGACTCCAAGGACGCATCAGGGGACGTCCAGAGAGGAAAACTCTCTCCTGATCTCCACGGAGTCTCTGAAATTCGTCATAATTTCGATGGATCTTCAGGAGAAAGGTATATCCTTTCTCAATCTAACCAACCACAGTCAGTCGCAGCAACTCCAAGTGCTATGTTCCCCTATccgagtcaacatggaccagcgcACCCGGCTTTTTCTATTGGGAGTCCGAGTCGTTATATGGCCCACCATCCAGTCATCACTAATGGAGCGTACAACAGTCTTCTGACCAACAGCTCCCCGCAAGGCTACCCAACCGCGGGTTACCCATACGCGCAACAGTATGGACACACTTATCAAGGAGCGGCATTCTACCAGTTTTCCTCCGCGCAAGCTGGGCTGGTGCCTGGGAAAGCGCAGGTATATCTGTGCAACAGGGCCCTGTGGCTGAAGTTTCACAGACATCAAACAGAGATGATAATCACTAAACAAGGACGACGGATGTTCCCCTTTTTGAGTTTCAATATTTCTGGTCTCGACCCGACGGCGCACTACAATATATTTGTGGATGTTATTCTTGCTGATCCAAATCACTGGCGATTCCAAGGTGGCAAGTGGGTACCATGTGGCAAAGCGGATACAAATGTGACAGGAAACAGGGTGTATATGCACCCTGACTCTCCAAACACCGGGGCGCACTGGATGCGCCAAGAAATCTCATTTGGAAAGCTGAAGTTAACGAACAATAAAGGAGGTTCAAACAACACGGGACAGATGGTGGTTCTACAATCCCTTCACAAGTACCAACCCAGGCTCCATGTAGTGGAAGTCAACGAAGATGGAACCGAGGACTCCAGCCAACCTGGAAGAGTACAAACGTTCACTTTCCCAGAAACACAGTTTATCGCAGTCACAGCATACCAGAATACAGACATTACGCAGCTAAAAATCGACCACAATCCATTTGCTAAAGGATTTCGGGACAACTATGACACTGTCTACACAGGTTGCGACATTGACCGGTTAACGCCATCACCGGGTGACTCACCTCGCTCTCAGATCATGCCTGGTGCGAGATATGCCATGGCTGGTTCTTTCCTACAGGACCAATTTGTCAGCAGTTATGCCAAATCTCGCTTTCACCCTGGCGTAGGGACTGGTCCTGGCACGGACCGCAGCGTCCCACTTAGTAACAGCTTGCTATCCCCGCAACAAACCGAAGAACCCACAGTTGCATCCCCGCAGCGATGGTTTGTCACCCCTGCCAATAACCGACTGGACTTTGCCGCCTCGGCATACGATGCCGCCGCGGCTGCTGATTTTGCGGGTAACGCGGCCACCCTGCTGTCATATGCAGCCGCTGGAGTAAAGGCCCTTCCCCTGCCCACTGCAGGGTGCTCAAGCAGACCTCTCGGTTACTATGCCGACCCATCCGGTTGGGGCACACGCACACCACCCCAGTACTGCAGTAAGTCAagtcctgttctatcctgctggccCACAAATTCTGTTGGCGGCAGATCAGGCACCTCTAACTACCTGGTTGATGACGCCGACACCATTCCAACAGAAAGGTCACCCATCGGAGGGTCCGATGAGGCAAAACCAAAAGACTTATCCGAATCCAGCTGGATAGAGACGCCGTCTTCAATCAAGTCGATTGATTCAAGTGATTCTGGTATTTTTGAGCAAGCCAAACGGAGAAGAATTTCACCGTCTGCCACACCGGTTTCGGAAACCCAGTTGAAATCTGAGATGTTGGCGCCAAGAGAGTGTGAGAAAAATTGCGCCAAGGACATTGGTTACTATAGTTTCTATCCACACAGTTAAACATCCATACATCTGGGGGGAAAAAACGCATGACCCATGTGTTATTTTTTAGATCCATCTATCTGTAGCCCATATCCAACTGATAATATCCAACGGACAGGCCTATCAGTTGCAATGCACACCCTACCCTGTCTTGGGCCAACATTGACGAACGATTTAAAGATGTTGCGTCGTAGTGCATAGGCATACTAGGCAAATTTAGGCGAGATTCTTCCATTTAACAGTATTAGTTTGCTATCTGATAGGCCTTAATACAATAGGCTATTTATTTAATTTGAAGATTTTTCACCAACAGCAATTGTCTATTGTAATTATGAAAATAATGTACATAATATTTAGCCCTTTAGTGATACTGTGAAATTAATGTAAACTATTGAATTCATTTGTAATATTTCTAAGTGTAGACATACTCGTTGGTTGTGTTTCAAAACGCATATCGTAGGCCTATACTATAAACAAGTGATCTCATACAATGTGTTAGATAACAAAAAAATAACTATTGCGAGTCTATGATGGCTATGTCGTTGTGTAGCATTATTTTACTGGTAGGAGCGAGATCGGAGGATATGTAGCCTAATTATTTCGAAACTCATTGTAGTAGGCTACTCTTTGCCCATCATGTTCAATCACAGTGTCAGTACAAAATATCCAGATGTTAGACATTTGAGGACGCAGCCATTTTATCTTACGCAAAATAAGATGGAAATTCATTATAGGTGTGGTAATAAACGTTTTAAATGTTGATATAGTGTACTTTTTACTAGGCTACATTAAtaaggggaaaaaacaatgttGTAATTTTTACGTCTTTTTCGGACCTTCCATTATTTTTTACAGATTGTGTACTAGTGTATGTGGAAGCTTCTGTATCTGCTGTAATGTGCTTCATTGCAATAAATTATAGAAACGTTGGA

Function

NR:

description
LOW QUALITY PROTEIN: T-box brain protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10174 TBR1; T-box brain protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597077.2 True 3062 mRNA 0.45 7 47971973 47976838

Neighbor

gene id symbol gene type direction distance location
LOC110520065 LOC106586184 coding upstream 23945 47929321 ~ 47948028 (+)
LOC118958036 NA coding upstream 120068 47847053 ~ 47851905 (+)
LOC110520058 tanc1 coding upstream 247130 47447377 ~ 47724843 (+)
LOC110520057 dal1b coding upstream 526762 47442506 ~ 47445211 (+)
LOC110520056 LOC106586174 coding upstream 530050 47315217 ~ 47441923 (+)
LOC110520067 LOC106586186 coding downstream 4214 47981052 ~ 48027085 (+)
LOC118958193 NA coding downstream 51400 48028238 ~ 48029697 (+)
LOC110520075 LOC106586196 coding downstream 478372 48455210 ~ 48508839 (+)
LOC110504158 LOC106903880 coding downstream 566182 48542999 ~ 48563667 (+)
LOC110520076 LOC106586200 coding downstream 585813 48562651 ~ 48577839 (+)
G265811 NA non-coding upstream 43557 47928210 ~ 47928416 (+)
G265810 NA non-coding upstream 43783 47927887 ~ 47928190 (+)
G265809 NA non-coding upstream 44720 47927018 ~ 47927253 (+)
G265805 NA non-coding upstream 48855 47922759 ~ 47923118 (+)
G265795 NA non-coding upstream 58873 47912893 ~ 47913100 (+)
G265851 NA non-coding downstream 55201 48032039 ~ 48032977 (+)
G266299 NA non-coding downstream 100408 48077246 ~ 48077691 (+)
G266300 NA non-coding downstream 100917 48077755 ~ 48078999 (+)
G266478 NA non-coding downstream 227121 48203959 ~ 48204325 (+)
G266524 NA non-coding downstream 257131 48233969 ~ 48234915 (+)
LOC110520046 LOC106586167 other upstream 1139729 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 1787169 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 1892548 46075484 ~ 46079425 (+)
G263710 NA other upstream 2037555 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 2132493 45838921 ~ 45839480 (+)
G267358 NA other downstream 1533965 49510803 ~ 49512475 (+)
G267381 NA other downstream 1577660 49554498 ~ 49555838 (+)
G267529 NA other downstream 1859779 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 2185463 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 2625464 50601983 ~ 50618761 (+)

Expression


Co-expression Network