LOC110520088 (LOC106586209)


Basic Information

Item Value
gene id LOC110520088
gene name LOC106586209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49043334 ~ 49046003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597125.2
ATGGATCCGAAAGCTGTAAGGGAAGATTTGCGCCTGTTTCAGAGCACCCTGCTCCAGGATGGCCTGAAAGAGCTACTGAACGAGAACAAGTTTATTGACTGCATTCTAAAAGTGGGAGACAGAAGCTTGCCCTGCCATAGACTTATTTTGGCAGCCTGTAGTCCTTATTTCCGAGAGTTTTACTTCTCAGGCGATGCTAAAGAAATGGATAAGGAGGTTGTTCTGGAGAATTTGGACCCCACAATCATGGAGATGATTGTGAATTACATGTATTCAGCAGAGATTGACATCACAGATGACAATGTGCAGGATATCTTTGCTGTGGCAAACCGTTTCCAGATcccctcagtgttcacagtgtgTGCGAATTTCCTACAGAAGAAGCTGTCCCCGGGTAACTGTATGGCCATATTCAGAATGGCACTGGTGCTCAACTGCCCCAGACTGGCATTGGCAAGTCGAGACTACATTGCAGATCGTTTTGAAACCCTGGCCAAGGAGGAAGACTTCTTAGAGCTGGCCTCTCATGAGCTTTTTGCCGTCATCGGAGCGGACTCTCTCAATGTAGAAAAGGAGGAGGTGGTGTTTGAATCCCTGATGAAATGGATTCGAAAAGACAAGGAGAACCGCGTCAAGACTCTAGAAGAGGCCTTTGACTGCATCCGTTTCCGTTTACTCCCAGAGAAGTACTTCAATGAGAAAGTGGAAAAGGATGACATCGTCAAGGCTGACCCTGAGCTCCTCAAAAAAATCAAAGTGATCAAAGATGCCTTTGCTGGGAAACTCCCTGAGAATAAGACAGGAGAGTCAGGGAAGGATGCAGTCAACAGTAAAGAAGGAGAGGATAACAGGTTACCTGGTTACCTGAATGATATCAAGAGAATTGGTATGTATGCCAAAGATCTCGTCTTGATGATCAACGACACTGCTGCAGTGGCCTATGATGGCGTTGAGAATGAATGCTTCCTTGCTGCAATGACTGAGCAGATTCCACGCAACCATGTCAGCCTGACATCAAAGAAAAACGATCTCTTCATCCTGGGAGGATTGTTTGTCGATGAAGAGGATAAAGATGCTCCGTTACAATGCTACTTCTATCAGctGGACATCCTTGCTGCTGATTGGATAGCTCTGCCCCCTATGCCCTCTCCCAGATGTCTGTTCAGTATGGGAGAATTTGACAATCTCATCTTTGCTGTAGCTGGTAAAGATCTACAGTCCAACGAATCTCTCGACTCTGTAATGTGCTATGATGTTGAGAAGATGAAATGGGCTGAGAGCAAAAAGCTACCTCTGAAAATCCATGGTCATAGTGTTGTTTCCCAGAATGGGTTGGTGTACTGTATCGGAGGGAAGACGGATGACAACAAAGCCATCGATAAGATGTTTGCGTACAACCACAAGAAATCAGAGTGGAAGGAGGTGGCTGCAATGAAAATGGCAAGATCCATGTTTGGGGCAGTCGTTCACAATGGGAAGATTGTGGTGACTGGAGGGGTCAATGAAGATGGTCTCACTTCTGCATCTGAAGCATATGACTTCGGAACCAACAAGTGGGCGCCCTTCACAGATTTCCCCCAGGAGAGGAGCTCAGTAAACCTGGTCAGCAGTGGAGGATTGCTGTATGCAGTTGGAGGCTTTACCATTGTGGCGACGGAGGACGACAAAGTTGCCCCAACGGAAATCATTGACATCTGGCAGTATGAAGAGGATAAGAAAGAATGGACCGGGATGCTCAAAGCGATGCGTTACGCCGCAGGGGCCTCCTGTGTGTCTATGCGTCTCAATGTAGCCAAAATGCCCAAATTGTGAACAAGAACACAATAAGTACTGTACCGTCTAGATGTAACATGGAGGACTGCAAAAACAATGTATTTAGATTGACTTTCATCGGGATCCTTCATGATTTGAACGCAccataatatactgaacaaaaacacaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaagattccagaaatgttc

Function

NR:

description
kelch-like protein 41a

GO: NA

KEGG:

id description
K10473 KBTBD5_10; kelch repeat and BTB domain-containing protein 5/10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597125.2 True 2000 mRNA 0.46 6 49043334 49046003

Neighbor

gene id symbol gene type direction distance location
LOC110520086 LOC106586207 coding upstream 8131 48995197 ~ 49035203 (+)
rdh3 rdh3 coding upstream 144847 48891513 ~ 48898487 (+)
LOC110520084 g6pc2 coding upstream 167091 48872108 ~ 48876243 (+)
LOC110520083 LOC106586203 coding upstream 186289 48826435 ~ 48857045 (+)
LOC110520081 LOC106581793 coding upstream 248062 48672040 ~ 48795272 (+)
LOC110520090 LOC106586208 coding downstream 6381 49052384 ~ 49057523 (+)
LOC110520091 LOC106586211 coding downstream 16482 49062485 ~ 49070285 (+)
LOC110520093 LOC106586213 coding downstream 29090 49075093 ~ 49079255 (+)
ubr3 LOC100380624 coding downstream 42710 49088713 ~ 49134170 (+)
myo3b myo3b coding downstream 89868 49135871 ~ 49249252 (+)
G267069 NA non-coding upstream 56482 48986650 ~ 48986852 (+)
G267031 LOC106586206 non-coding upstream 107852 48934753 ~ 48935482 (+)
G266941 NA non-coding upstream 262832 48777515 ~ 48780502 (+)
G266938 NA non-coding upstream 268391 48774578 ~ 48774943 (+)
LOC110520080 LOC106581709 non-coding upstream 376219 48645110 ~ 48667115 (+)
G267190 NA non-coding downstream 158059 49204062 ~ 49204683 (+)
G267215 NA non-coding downstream 203430 49249433 ~ 49249614 (+)
G267214 NA non-coding downstream 204780 49250783 ~ 49251132 (+)
G267217 NA non-coding downstream 207950 49253953 ~ 49254214 (+)
LOC110520046 LOC106586167 other upstream 2211090 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 2858530 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 2963909 46075484 ~ 46079425 (+)
G263710 NA other upstream 3108916 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 3203854 45838921 ~ 45839480 (+)
G267358 NA other downstream 464800 49510803 ~ 49512475 (+)
G267381 NA other downstream 508495 49554498 ~ 49555838 (+)
G267529 NA other downstream 790614 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 1116298 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 1556299 50601983 ~ 50618761 (+)

Expression


Co-expression Network