RNA id: XM_021597125.2


Basic Information

Item Value
RNA id XM_021597125.2
length 2000
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110520088
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49043334 ~ 49046003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGATCCGAAAGCTGTAAGGGAAGATTTGCGCCTGTTTCAGAGCACCCTGCTCCAGGATGGCCTGAAAGAGCTACTGAACGAGAACAAGTTTATTGACTGCATTCTAAAAGTGGGAGACAGAAGCTTGCCCTGCCATAGACTTATTTTGGCAGCCTGTAGTCCTTATTTCCGAGAGTTTTACTTCTCAGGCGATGCTAAAGAAATGGATAAGGAGGTTGTTCTGGAGAATTTGGACCCCACAATCATGGAGATGATTGTGAATTACATGTATTCAGCAGAGATTGACATCACAGATGACAATGTGCAGGATATCTTTGCTGTGGCAAACCGTTTCCAGATcccctcagtgttcacagtgtgTGCGAATTTCCTACAGAAGAAGCTGTCCCCGGGTAACTGTATGGCCATATTCAGAATGGCACTGGTGCTCAACTGCCCCAGACTGGCATTGGCAAGTCGAGACTACATTGCAGATCGTTTTGAAACCCTGGCCAAGGAGGAAGACTTCTTAGAGCTGGCCTCTCATGAGCTTTTTGCCGTCATCGGAGCGGACTCTCTCAATGTAGAAAAGGAGGAGGTGGTGTTTGAATCCCTGATGAAATGGATTCGAAAAGACAAGGAGAACCGCGTCAAGACTCTAGAAGAGGCCTTTGACTGCATCCGTTTCCGTTTACTCCCAGAGAAGTACTTCAATGAGAAAGTGGAAAAGGATGACATCGTCAAGGCTGACCCTGAGCTCCTCAAAAAAATCAAAGTGATCAAAGATGCCTTTGCTGGGAAACTCCCTGAGAATAAGACAGGAGAGTCAGGGAAGGATGCAGTCAACAGTAAAGAAGGAGAGGATAACAGGTTACCTGGTTACCTGAATGATATCAAGAGAATTGGTATGTATGCCAAAGATCTCGTCTTGATGATCAACGACACTGCTGCAGTGGCCTATGATGGCGTTGAGAATGAATGCTTCCTTGCTGCAATGACTGAGCAGATTCCACGCAACCATGTCAGCCTGACATCAAAGAAAAACGATCTCTTCATCCTGGGAGGATTGTTTGTCGATGAAGAGGATAAAGATGCTCCGTTACAATGCTACTTCTATCAGctGGACATCCTTGCTGCTGATTGGATAGCTCTGCCCCCTATGCCCTCTCCCAGATGTCTGTTCAGTATGGGAGAATTTGACAATCTCATCTTTGCTGTAGCTGGTAAAGATCTACAGTCCAACGAATCTCTCGACTCTGTAATGTGCTATGATGTTGAGAAGATGAAATGGGCTGAGAGCAAAAAGCTACCTCTGAAAATCCATGGTCATAGTGTTGTTTCCCAGAATGGGTTGGTGTACTGTATCGGAGGGAAGACGGATGACAACAAAGCCATCGATAAGATGTTTGCGTACAACCACAAGAAATCAGAGTGGAAGGAGGTGGCTGCAATGAAAATGGCAAGATCCATGTTTGGGGCAGTCGTTCACAATGGGAAGATTGTGGTGACTGGAGGGGTCAATGAAGATGGTCTCACTTCTGCATCTGAAGCATATGACTTCGGAACCAACAAGTGGGCGCCCTTCACAGATTTCCCCCAGGAGAGGAGCTCAGTAAACCTGGTCAGCAGTGGAGGATTGCTGTATGCAGTTGGAGGCTTTACCATTGTGGCGACGGAGGACGACAAAGTTGCCCCAACGGAAATCATTGACATCTGGCAGTATGAAGAGGATAAGAAAGAATGGACCGGGATGCTCAAAGCGATGCGTTACGCCGCAGGGGCCTCCTGTGTGTCTATGCGTCTCAATGTAGCCAAAATGCCCAAATTGTGAACAAGAACACAATAAGTACTGTACCGTCTAGATGTAACATGGAGGACTGCAAAAACAATGTATTTAGATTGACTTTCATCGGGATCCTTCATGATTTGAACGCAccataatatactgaacaaaaacacaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaagattccagaaatgttc

Function

GO: NA

KEGG:

id description
K10473 KBTBD5_10; kelch repeat and BTB domain-containing protein 5/10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303466 lncRNA upstream 56482 48986650 ~ 48986852 (+) True G267069
TU303427 lncRNA upstream 107852 48934753 ~ 48935482 (+) True G267031
TU303327 lncRNA upstream 262832 48777515 ~ 48780502 (+) True G266941
TU303324 lncRNA upstream 268391 48774578 ~ 48774943 (+) True G266938
TU303204 lncRNA upstream 376219 48651133 ~ 48667115 (+) True LOC110520080
TU303598 lncRNA downstream 158059 49204062 ~ 49204683 (+) True G267190
TU303517 lncRNA downstream 159875 49205878 ~ 49206112 (+) True myo3b
TU303623 lncRNA downstream 203430 49249433 ~ 49249614 (+) True G267215
TU303622 lncRNA downstream 204780 49250783 ~ 49251132 (+) True G267214
TU303625 lncRNA downstream 207950 49253953 ~ 49254214 (+) True G267217
XM_021597124.2 mRNA upstream 8131 48995197 ~ 49035203 (+) True LOC110520086
NM_001165081.2 mRNA upstream 144847 48891589 ~ 48898487 (+) True rdh3
XM_021581815.2 mRNA upstream 145382 48891513 ~ 48897952 (+) False rdh3
XM_036974375.1 mRNA upstream 167091 48872108 ~ 48876243 (+) True LOC110520084
XM_021597122.2 mRNA upstream 186289 48826435 ~ 48857045 (+) True LOC110520083
XM_021597127.2 mRNA downstream 6381 49052384 ~ 49057523 (+) False LOC110520090
XM_036974383.1 mRNA downstream 6429 49052432 ~ 49057523 (+) True LOC110520090
XM_021597128.2 mRNA downstream 16482 49062485 ~ 49070285 (+) True LOC110520091
XM_021597130.2 mRNA downstream 29090 49075093 ~ 49079255 (+) True LOC110520093
XM_021597131.2 mRNA downstream 42710 49088713 ~ 49134170 (+) False ubr3
TU300304 other upstream 2211090 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2211130 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2211200 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 2858530 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 2963909 46075484 ~ 46079425 (+) True G263733
TU303780 other downstream 464800 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 508495 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 790614 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 1116298 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 1556299 50602302 ~ 50604816 (+) True LOC110520146

Expression Profile