RNA id: XM_021597130.2


Basic Information

Item Value
RNA id XM_021597130.2
length 1806
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC110520093
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49075093 ~ 49079255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGCTGCAGTCCAGAAAGCAATTTGTTTTGGCCCTCAATATTCTCCGTAGAACGTGCTTGCTTGCCAACTTGATTTAGTAGTGTGGTAGAAAGTCTTCTGAAGAACCAGCATCTCTGCAGGTAGCAGGTCAATTTATCACAACACATCATGGCAGAAAATCAAGCTATGTCTGAACTTGAGAAGAAGGTGGCAAGACAGATTGAGTACTACTTTGGTGATCACAACCTTCCAAGAGACAAGTTCCTCAAAGAACAGTTGCAGCTCGATGATGGCTGGGTGACTCTGGAGACTATGCTGAAGTTTAACAGACTGAAATGTTTGACAACCGATCCCAACGTAATTGTTGAGTCTCTGAAAAAATCCAAGACTGGCCTTTTGGAAATGAGTGAGGATAAAACAAAAATCAGGAGAATTTCAAGCAAGCCTTTACCAGAACTGAATGACGAGTACAAAGATGCCCTCAAACACAAATCTGTGTACATTAAAGGTTTTCCATTGGAGACGACGCTTGATGAAATTGATGGGTGGCTGAAAGGGAAAGGAGTCATAGAAAACATTCAGATGAGACGAAACTTGCAAAAGAAGTTCAAGggctccGTGTTCCTGACTTTCGACACTGAAGAAGTATCAAAGCAGTTCCTTGGACGCACAGACACCAAATCATTCAAAGAAAATGAAATGATTGTACTGTCAAGAGAGGACTACCATGCAAAGAAAGCAGAGGATAGAAAACAGTTCAAAGCGGAGGCAAAGGCTAAAGCTAAACAAGACAAGGACGAAAAACAAAAACATGCAGAGGAAGAGGAAATGAAATCTCTGGACGAGCAGACCGGATGCCTGCTGAAGTTCTCAGGCAATCTTGACAGTGTTTCAAGAGAGGACTTTCACGAGGTTTTCTCAGGTCATGGTCAAATCAAATGGATTGATTTCATCAGGGGTGCCAAAGAGGGTACCATCCTCTTCAGAGTGAGTGCTAAGGAAGCTTTTGATAAGGCCAAAGAAGCAAATGGAGGAAACTTGAAAATTAAAGACAAAGATGTTActtgggaggtggtggagggagaTGCTGAGAGGGAAACTCTGAAAAAGATAATTGAAGATCAACAGGAATCTCTCAACAAACAAAGAGGCAGAGGTGGCCGAAAATCaggtgggagaggggggagaggaggacgcAGGGACAGGGGTGGACGTGACGGCAAATCACACTACCAAGGCAAAAAGACCAAATTTGATGATGGCGATAATGATGACGCACCTCCTAGTCCAAAGAAGCGAGCACTGGCAGGAGCGGGCAAAGACGCTGATGCTCCAGCTGCAAAGGTTGCCAAAACTCCGAATGGTTCTTAGAAATGATATCTACTGCACATCTCAATGAAATATTGTATTTGAAAAGAAACTAACTGAAAACATAGAACAACTTTATTCCATTCCAGTGGAGGCTTCAAGAGAACTGTAGACAGTTCACCTTGATGTCAACCTAGAAAACAATTTGTAATGCAAATGGAAACGGTAAATTTCTACCCTGagcataattattattttttttaatgggtTTGTCTTATTTAATATGGATTTAATTTGTTGACTGCGTCTGAAAATAATTTCATTTCAACAGGAGTGTATTATGCTTGTTCGTCACCTCTGTACAAAGACGTGCATGTCAATAGAAAGTTGTTAATCAGTGCCATTAAATTTTTCCTCAATTATTTTAATCGTGTATACTGTTCAATCCTAAAGCCCAGATCTAGGTCCTTCCTAATTTACTTTTGTGAATagccaataaaatgtgatttttaaaTTGA

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K11090 LA, SSB; lupus La protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303466 lncRNA upstream 88241 48986650 ~ 48986852 (+) True G267069
TU303427 lncRNA upstream 139611 48934753 ~ 48935482 (+) True G267031
TU303327 lncRNA upstream 294591 48777515 ~ 48780502 (+) True G266941
TU303324 lncRNA upstream 300150 48774578 ~ 48774943 (+) True G266938
TU303204 lncRNA upstream 407978 48651133 ~ 48667115 (+) True LOC110520080
TU303598 lncRNA downstream 124807 49204062 ~ 49204683 (+) True G267190
TU303517 lncRNA downstream 126623 49205878 ~ 49206112 (+) True myo3b
TU303623 lncRNA downstream 170178 49249433 ~ 49249614 (+) True G267215
TU303622 lncRNA downstream 171528 49250783 ~ 49251132 (+) True G267214
TU303625 lncRNA downstream 174698 49253953 ~ 49254214 (+) True G267217
XM_021597128.2 mRNA upstream 4808 49062485 ~ 49070285 (+) True LOC110520091
XM_021597127.2 mRNA upstream 17570 49052384 ~ 49057523 (+) False LOC110520090
XM_036974383.1 mRNA upstream 17570 49052432 ~ 49057523 (+) True LOC110520090
XM_021597125.2 mRNA upstream 29090 49043334 ~ 49046003 (+) True LOC110520088
XM_021597124.2 mRNA upstream 39890 48995197 ~ 49035203 (+) True LOC110520086
XM_021597131.2 mRNA downstream 9458 49088713 ~ 49134170 (+) False ubr3
XM_021597132.2 mRNA downstream 9459 49088714 ~ 49134170 (+) False ubr3
XM_021597133.2 mRNA downstream 9461 49088716 ~ 49134170 (+) False ubr3
XM_021597134.2 mRNA downstream 9462 49088717 ~ 49134170 (+) True ubr3
XM_021597137.2 mRNA downstream 56616 49135871 ~ 49249252 (+) False myo3b
TU300304 other upstream 2242849 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2242889 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2242959 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 2890289 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 2995668 46075484 ~ 46079425 (+) True G263733
TU303780 other downstream 431548 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 475243 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 757362 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 1083046 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 1523047 50602302 ~ 50604816 (+) True LOC110520146

Expression Profile