RNA id: XM_021597134.2


Basic Information

Item Value
RNA id XM_021597134.2
length 8226
RNA type mRNA
GC content 0.48
exon number 39
gene id ubr3
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49088713 ~ 49134170 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCAAGTTTGAGCTAGACTTTTAGCAACAAAAGCTGCAACTCACAGCACACCCATCGTCAGAGCTACGGGGAGCATGTACAGAGACAGAGTAACACTTCCGCATTTAGTGGGGTCTCAATGAAAACAATCCGAAGTGAAACGGACGCTACGAAAAACTACCACTATGAACATCGAGTTTTTGCAATACAAAATATGCATGACATTTTCGTATTCTATACTTAGTCCACTAGTTACTGCCACTATAAAGAGTGTATTGTTATTGGAAGCACTGGAATCTTCTCTTGTAGGATTACTGTAATCGTGGGTTCTGACATTGTCATTGTCATCAGCTGCATACGGGACAGCAGTAGCCGAGACTACGACACAGTTAGTCACTTGCCAAACTTGGTGCTGATTGGCAATGAAGTCGCACGCCAATGTGGTTGATTGACTCCTGTGGAACCAACTGAACACTATAGACGCTGAATACAACTCAACACAATGGTATTATCGAAATGTATCGCGAGAAATCACGAGAACGTACCAACAAGACAACAAAAATAAATTTGTGGAAAACAAGCAGTGAATTATGGCGGCGTCACTGGTACGCCGGGACAAGAAATCTACTGCTGCCCATTTAAAGGCAGATCTTAATTGgactgacaacagctctggtgtccGACAACTTCAAGAGCTACTTGATTCTGTTCTTAATCCAGAAAAGCCAGCGGCAGACACAGAAGCCCTTGACTGGTGTAAATGTCTAATAGCAGGAGGAGAAGGTTTCGAAGAGTTCTGCAAAACGGTCCGGTCCTATGACAACGCTACTTTATGTGGCTTGGTTTGGACAGCCAATTTTGTGGCATACCGCTGTCGGACCTGTGGCATATCACCTTGCATGTCACTTTGTGCAGAATGTTTTAATAACGGCGATCACACAGGCCATGATTTCAACATGTTCAGGAGCCAGGCTGGTGGGGCCTGTGACTGTGGAGACAGTAATGTCATGCGAGAGACTGGATTTTGCAATCGGCATCGGTTAAGAACCGGGGAGAATGTCCCCTCAGTCCCCAGAGACTTACTACTGATGTCAGAGATGGTCCTACCCCGCTTCATCATCTGTATCATACAGTACCTAAGGGATGGATACACTGAACCAGACACATCAACTGAGAGAGACCTACAGAAGGTCTTACAGCAGCTGGAACCCCAGATCTCCTTCTTAGAAGAACTTACGAAGATGGGTGGGGCAATGAGAACTGTACTGACAAAGATCCTAACGAATCAGCAAATATTCAAGGACCTGAGCGTGGGTCAAGAGGAGAATGTATATGCAAAAAATAACTACGAGAAGTACCTGTCAGCGCTGAAGAACTCAGGCCTGGTGTCTGTGGAGGAGAAGGCCCAGTCTGGGGCTGCAGAGCCAACTCGCGGGGCTGAGGCAGGGGCTGGCGCAGGGGCGCTGGGTTTACTGGGAGCTGAAGCACCAGCCAGCCCTGATGAGTCCAATAAAGAGGAGGATCAAGATGGGGGGCAATCGgttggacagagaaagagagttaaACTTAGTAGCACTGCCAAAGATCCATCCATTATGGACTCTCTGAAACACAAATGTTTTCTGGAGGAGTTGCTGTTTTGGACAATAAAGTATGAGTTTCCTCAGAAGATGGTTACTTTTCTACTGAACATGCTGCCAGATCAAGACTACAAGATCACCTTCACGAAAACATTTGTTCAACATTATGCATTCATTATGAAGACACTGATGAAAAGCCAGGAGTCAGATACCATGTCCAACCGCATCGTACATATCAGTGTACAGCTGTTCAGCAATGAGGAGCTAGCACGTCACGTCACCGAGGAGTGTCAACTCCTAGACATCATGGTCACTGTCCTCCTCTACATGATGGAGAGTTGCCTTATCAAAAGTGAACTTCAAGATGAAGAGAACAGCCGCCATGTTGTGGTCAACTGCAGCGAGCCTCTGCTGAAGAACAACACTTACTGGCCTTTAGTTAGCGATTTTATTAATATTCTCTCACACCAAAGTGTAGCAAAAAAATTCCTGGAGGACCACTCACTGCTCATGCTGTGGATGAGCTTTGTGTCCTTCTTTCAAGGTATGAACTTGAATAAGCGGGAGTTGAGTGAGCACGTGGAGTTCGAGTCCCAGACGTACTATGCAGCTTTTGCAGCAGAGTTGGAGGCCTGCGCACAACCAATGTGGGGTCTCCTCACACACTGCAAAGTCAAAGAGACACAGGAATACACCAAGACGGTGGTGCGTTACTGCTTGGAGACTCTGCAGATCTGGTTTGATGCCATTGGCTTTGTGGATGAGcCTGCTCCAAATCAAGTGACCTTTCACCTGCCACTGCACCGTTACTACGCCATGTTCCTAAGCAAGGCAGTGAAGTGCCAGGGGCTTGACCTGGACAGTCTCCTCCCACACCAAGAGATGCTCATGAAGATTATGGTCCATCCACTCCAGATTCAGGCGAGCCTGTCAGAGATTCACAGTAACATGTGGGTAAGAAATGGTCTCCAGATCAAAGGACAGGCTATGACCTACGTGCAGTCTCACTTTTGCAACTCCATGATCGATCCAGACATCTTTCTGCTCCAGGTGTGTGCGTCAAGGCTTGATCCCGACTACTTCATCTCTTCAGTGTTCGAGAGATTCAAAGTGGTGGACCTCTTGACCATGGCCTCTGTGCACCAGAATGCAGTACTGGACGGTGAGCAGGAGAGGCCAATGCTGGAGGGAGCCTTGACGTTTCTCGTCATCTTGTCCAGTCTTCGCATTCACTTGGGCATGGCAGATGATGAGATTCTCAGAGCCGAGATGGTCTCCCAACTGTGTATGAACGACCGCACCCACAGTTCACTGTTGGACCTCATTCCTGAGAATCCCAACCCCAAGAGTGGAATCGTCCCAGGAAGCTGCAGCTTTGAGGAGATGCTGTCTGCCGTGGCTGACTTCAAAGCCCCTGTGTTTGAACCTGGGGGTTCCATGCAGCAGGGCATGTACACACCTAAAGAGGAGGTGTGGGAGAAGGAGTTTGACCCCATCATGGTGGTTCTCAGAACAGTCTACCGTCGTGATGTCCAGTCAGCAATGGACAGATACTCAGCATTCTTGAAACAGTCTGGGATGCACACGACAGGGAATCCATGGCCACCGTACAAAGAGAGGACTCCTCTGCACCCATGTTACAAAGGCCTGGACAGGCTGTTGCACTGCAAGACTCTTCACATTGTCATCTTCACTCTGCTTTACAAGATCTGGCTGGATCACTCCAACATGTCTGAGCATGTTCTCTGCATGGTGCTCTACCTGATTGAGCTGGGCTTGGACAACCAGGTTCAAGAGGACAAGGAGGATGAGGAACCTTGCATTGAGGAGCACTGCCATGACAGCTGGTTCCCAGGCACCAACCTCCTGTCCAACCTGCACCATGTCATCAACTACGTGAGGGTGAGGGTGCCTGAGACTGCCCCCGAGGTGAAGAGGGAGAAAGATCCCCCTCCCAGCACCAGCGCTGAGGCATCCAACTTCGGTCAGAACGTCCGGGAGGCGCAGGTGTTCAGCCTGGTGGCGGAGCGCAGGAGGAAGTTCCAGGAGATCATCAACCGCAGCAGCACCGAGGCCAGCCAGGTGGTGAGGCCCAAGAGCAGCTCTACACGCTGGGTCCCGCCCGGCACGCCTCCCCAGCTGGTCACAGAGATCCTGGAGATCCGCGAGAGCATGCTCTCCCTGCTCATCAAGCTGCACCAGAAGCTGTCGGCCAAGCAGAACTCTCTGTCGGCCACTTGGCTGGAGGATATGGAAACCAACAGCCACGCCCACGGGGATGGCATCACCGCCATCGAGCGCATCCTCACCAAGGCGGCCACGCGCAGCCGCCAGAGCAAGCGCAGCATCCAGGAGATCTGTGGGAAGGTCTCTCCTCCCGTCGCTCCCAAGAAGAACAGCCCCACTGACAAGAAGACCATGGACAAGGACGAGAGGCGTCAGAGGGCTCGAGAGAGACAGCAGAAGCTACTGGCTGAGTTTGCCTCCAGACAGAAGAGTTTCATGGAAACGGCCATGGATGTCGAATCCCCGGACGCTGAAGCAGCCATGGACCTGGGTGCCTCGGAGGTGATGGAGTCTGAGGTCCTCTATGACTGTGTGATCTGTGGCCAGAGTGGCCCTTCCACTGAGGACCGGCCCACTGGCCTGGTGGTTCTCCTTCAGGCATCGTCAGTGCTGGGACACCGATGCAAGAGTGACGAGACGAAGAAACTGCCGACCACTGACGATGAGCACATCTACCCAGCGGACACGTGCGGGGCGGCTCACGACGTCAGACTCGCTCTCATGCAACGCTTCTTCAAAGATAGTTCCTGTCTGCAGTCGGTCTCAATAGGCTGGGAGGGGGGTGTGTATGTGCAGACCTGTGGACACACCCTGCACATAGACTGCCACAAGTCCTACATGGTGTCTCTGCGGAATGACCAGATGCTGCAGGGCTTTTCTGTGGATAAGGGCGAGTTCACCTGCCCGCTGTGCAGACAGTTTGCCAACAGTGTGCTGCCTTGCCGCCCGGGCCGGAGCACCGAGGTGGTGAGCTGGCACATGCCCACCAACAAGAAGACCGCTGTGCTGGTGAAGGAGGTGGAGGACCTGCAGGAGCAGCTGGGGCTTTTCCCAACGGAGTCCAACCTGAGTAAAGAGATGGAGTCGGTCATCAAGGACATCAAGAACACCACCCAGAGGAAGTACATGGACTATGGCAAGAACCCTGGTTCCCCTGACAACGACTTCCTCTTCATGTACTCTGTGGCCAGGACAAACCTGGAGCTGGAGCTGGTGCACCGTGGAGGTAACCTGTGTTCTGGAGGAGCCAGTGCTGCAGCCAAGCGCTCCTGTCTCAATCAGCTTTTCCATGTGCTTGCCATGCACATGCGTCTGTACAGCATTGATTCTGCGTACAATCCCTGGACCAGGTTGACCCAGGTGGCTCAGAGAAGAGACGACTGCCTGGATGACGAGAGGCCAGAGGTCCCCATGCTGTTCAGAGACTGCCCATCCCTGCTCATCATCTTTGTGTTGACCATGCCACAGCCACTACGCAAAGaACACTTCATCTGTCTGGTGAGGATGCTGTACAACCTGCAGTACACCCAGGCTCTGGCATCTCTCTCAGCCAAGTTCAGCCCCGAGGAGAGGCAGGCCTGGAGCACGTCTGGAGCTCTCAAGAAGAATGCTTTCGATGCCGAGAAGTCCTATGACGCTCTTCTCAGCCATGTCATCGGTGAGCTGTCCAAGGTGAAGACTGTGTATGATGTGAACACTGAAGTGCCGTCTATGCTGAGCTCCAGTGTGTGGTCCCCACACTCCATAGAGTACAGCCTCCAGCAGTTCTGCCTGCCCTACCTCcgcctctcctgtctcctgcagCACCACCTCTATGGGGACAAACTGTCAGGTTGCCCGGAGGTAGAGGAATTCTCAGGCCTCGCCGGCTGTCTAGGGCTCCTGGCCCCAGCCCTTCAACCATCCAACCCCATCTACAGTGCCTCGTGTCTTGACTGGACGGTCAACGCTTTCGACCTGATGACTCAATGGTGCTCTGAGGTCACGGGGCTCTCTGACACGCAGGCAAAGAAATCAATAACCTTGCTTGTCCAGGATCCACGGTGGGCgtctccccacctcctccactTACCTGACCACTACAACATCATCTTCCAGTACTACCACAAGAAGGCCTGTACTGCCTGCAAAAAGGTGCCAAAGGACCCAGCACTCTGCCTCGTCTGTGGCACCTTTGTGTGCCTCAAAGGGCTGTGCTGCAAGCAGCAGGGGATCTGTGAATGTGTTTTGCACTCTCAACACTGTGGCGCAGCAACAGGCATCTTCCTATTGATCAACGCctctgtcatcatcatcatccgaGGGCATCGCTTCTGCCTGTGGGGCTCTGTTTACCTGGATGCCCATGGAGAGGAGGACCGCGATCTACGTCGTGGCAAGcccctgtttctgtgtgtggagaggTATAGAGTACTGCAGCAACAGTGGGTTTCGCACACCTTTGATCACATTAACAAGCGCTGGGGACCTCACTACAATGGACTGTAAGGTTACCTGAACCCACACCCTGATGGAAAAGAATCTCTTTGGCTTATGTGTCTGCCTCTGTTAAACATATAGGAATCTTATCATGTGATATAAGCAAATATGCAGTGAGTGTGTCACTGCCACAGCCTTGGATTATGTGGAGTTTGGTGTACAATCATGCCTCaagactaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttatttaagTGGATTTCAACAGGGAGAAACCTGAAAGCACAACTTTGCCCAGTTAGTTTGGAAGATGTTTTGAAGGCAGGCAGTTTTTTTTCACAAAAACATACTCAGATTCGAGTGAATATTTGTACACTGATTGGCTTACAGGTTGAGTTCGAACTACTCTATTTGGAGTATATAGAATGACAGATTTGCCCCTGGTAAGGTTAATGATTAtcatctttgtcaccatgtacaAATTGATGCATATCCCTAATTTTTTGACTTCGTACTGCTGGCATGAGTTTAAAGCTCTTGATAAGTATACCAATTGTAAATTgtgtgctcagtgtgtgtgtgttgggacatTCTGGTAGGTGACACAAGTCCACTCATCAACAAAGAGTTTATTGCAGTTAAGCAAaggcaattaaaaaaaaaaatcatcctcAGGTATAATTTCTTTGCTGCAGTTTTAAAATAcctttttaatatttttaataaatgttgcTGCTCATTGTTCAAATAAGTAATTTTACCTTTGTAAAGattatttttgttttctttttctaAGAAATTAAGGTTTTGTTTTTGGTAGATGGCTGATAACAGGTTGTTGATTCTAGCTCACTGCAAGGTTGAGGGAGACAGTCATCTCTATTGGTCTTTGCAGTCCTGCCTTTCACTACGCCTCCGGCCCGGGTCCCTGAGGAAACTCAATGCCCACTCACCAGTCTAGCAGAGTACATAGAAAAGACTGTTGTGGAGTATATCTGTCCAATGTAATTGGCATGCTTTTCCTAAAATCTCCATTGCTCAGAATGTCATGTGCAATGGGATTTTGCTATAGTTAAATGGAAATATTTTTATTTCAAAGTTATTGTACTGATATGGCTTTCTTTAAGGGAATGGGAATCATTTCATCCTTTGTGCTGGTGAAGAATTCTGCAGTTTTAGAGTACAGtttcatttattttttggggCCTGATTTTCACATTTCCTTTTAGTCTCTCTGTAAAGTTATGGTAAATGTATATGGGCTCATAATGCAAGATCCCATCTTTTAAATAACCATAGGTAAAGACAAGAAATTGGGAAATTGTTGATGATAATAGATGTAATTGTAGGTGGTTTTGCAAAGTATAATAGCGTTAACCTTAACAAATTTGTCATTCATGTAATCCACACTTGTGGTCCAATTATATCATTTTCTATACTTTCAAATAACAGTTTATTTGTATGCTTTTGATTGCCAAAAGTTATAATTCCAGTATATTTATAAGGACAACTATTTCCCCATGCCTACATTTCTCCAAGTTTAAATTATTATCTTGGGTCATGGATGCTTTCCAATGTTAGACATCAGACTTCAACCATAATACACAATGTATGCATGACATTGTTTTTTTCATTCACACTTTTTGAGTTTTGGGTCTTAAATGCTTTGTAATTTCAACTATGTCGCCAACTGGATGAGTAGATGGGTAGATGAGTACATCTGGATGAGTAGATCCACTTGTGCGTGCAAGATAACTTTTAGTGAAAAACAGCACATTCAAATCCTTGGGTGATTTTATTCTGGTGAAAGTATTTTGTGAATTGCTGGTCCACATCGTGCTCGAAGGAGGAATCTTTTAGGAAATATTTATTTCCATCCACGCATGCTGCTTATCTGTCTACTCTGAGTTTCCCTTCCCTCTTTTTTTTCCCCAGTCCCCTACTTTGTAGCCTACATGACTGCAACAAAATATCCAATAAGTGATGGGTGTACGTTCTAATTGAAAGTTCTTTGTTCTCCTATATGAATGAAAATCAGAAGgtatacagtacattactgtaggtgctgATTCAGGCTTTCTGAGTTGGATCAGAAGGTGTGACTTGGACATTTATTGCAAAATGTAACATATGTTAATAAAATATAAACACACTGA

Function

GO: NA

KEGG:

id description
K11978 UBR3; E3 ubiquitin-protein ligase UBR3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303466 lncRNA upstream 101865 48986650 ~ 48986852 (+) True G267069
TU303427 lncRNA upstream 153235 48934753 ~ 48935482 (+) True G267031
TU303327 lncRNA upstream 308215 48777515 ~ 48780502 (+) True G266941
TU303324 lncRNA upstream 313774 48774578 ~ 48774943 (+) True G266938
TU303204 lncRNA upstream 421602 48651133 ~ 48667115 (+) True LOC110520080
TU303598 lncRNA downstream 69892 49204062 ~ 49204683 (+) True G267190
TU303517 lncRNA downstream 71708 49205878 ~ 49206112 (+) True myo3b
TU303623 lncRNA downstream 115263 49249433 ~ 49249614 (+) True G267215
TU303622 lncRNA downstream 116613 49250783 ~ 49251132 (+) True G267214
TU303625 lncRNA downstream 119783 49253953 ~ 49254214 (+) True G267217
XM_021597130.2 mRNA upstream 9462 49075093 ~ 49079255 (+) True LOC110520093
XM_021597128.2 mRNA upstream 18432 49062485 ~ 49070285 (+) True LOC110520091
XM_021597127.2 mRNA upstream 31194 49052384 ~ 49057523 (+) False LOC110520090
XM_036974383.1 mRNA upstream 31194 49052432 ~ 49057523 (+) True LOC110520090
XM_021597125.2 mRNA upstream 42714 49043334 ~ 49046003 (+) True LOC110520088
XM_021597137.2 mRNA downstream 1701 49135871 ~ 49249252 (+) False myo3b
XM_021597138.2 mRNA downstream 121180 49255350 ~ 49257633 (+) True LOC110520096
XM_021597139.2 mRNA downstream 132778 49266948 ~ 49281964 (+) False gad1a
XM_021597140.2 mRNA downstream 132778 49266948 ~ 49281964 (+) False gad1a
XM_021597141.2 mRNA downstream 132778 49266948 ~ 49281964 (+) True gad1a
TU300304 other upstream 2256473 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2256513 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2256583 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 2903913 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 3009292 46075484 ~ 46079425 (+) True G263733
TU303780 other downstream 376633 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 420328 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 702447 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 1028131 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 1468132 50602302 ~ 50604816 (+) True LOC110520146

Expression Profile