XLOC_021729 (tmprss12)


Basic Information

Item Value
gene id XLOC_021729
gene name tmprss12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27345826 ~ 27350829 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043119
GTTGAATCAAATGATTCGTTTCTGCCTGCTTCTATCTCGCTGTTTTTTGTTGCTTTCTCGTTTAAAATGAGCCTAACATTCGTCTTAATTATAATTTGTCTGTTACCCTTTGGGATTGCAGGTTGTGGACAGCGAACTTTGGTGAGCCCGCCAAAACAGTCCCGAATTTCAGGGGGCCACTCTGCATTAGAGGGTGCTTGGCCTTGGCAGGTGAGCATTCAGCAGATGTTCTGGCATATTTGTGGTGGGTCCATCATCAGCCACCGATGGGTAATCACCGCATCTCACTGCTTCAAGAAAAAAAGaaaCAACAATAAACTTCTAGTAGTGGCTGGAGTGAATTCACGATTCAAGCCAGGAAAAGAAGTGCAGTATCGCACTGTCCAGAAAGTCATCCTGCATGAGAAGTACAACCAATCCGAATATGACAACGATGTGGCACTGTTGTATCTGCACCACCCTTTCTATTTCACAAATTACGTGCAGCCGGTGTGCATACTGGAAAATCAAATGCATGAGAAACAACTCAACTTTGGGTTATGTTACATCACTGGATGGGGCAGTTCAGTGTTAGAAGgaaagTTATACAACACTCTCCAGGAAGCTGAAGTTGAGCTCATTGACACTCAAATCTGCAACCAGAGATGGTGGCATAATGGCCATGTTAATGACAACATGATCTGTGCAGGATTTGAAACAGGGGGAGTCGACACCTGTCAGGGTGACAGCGGAGGCCCTCTGCAGTGTTACAGCCAAGACAAGGAGAGATTTTACCTTTTTGGTGTGACAAGTCATGGAGATGGTTGTGCTTTGCCAAAGAAACCTGGCATATATGCTCGTGCAAGTCGTTACACAga

Function

symbol description
tmprss12 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMPRSS12 (transmembrane serine protease 12).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-370 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMPRSS12 (transmembrane serine protease 12).

Ensembl:

ensembl_id ENSDARG00000093100

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043119 True 857 mRNA 0.45 5 27345826 27350829

Neighbor

gene id symbol gene type direction distance location
XLOC_021728 mipa coding upstream 273052 27068225 ~ 27072774 (+)
XLOC_021727 ptges3a coding upstream 285828 27051919 ~ 27059998 (+)
XLOC_021726 rnd1b coding upstream 339764 26979174 ~ 27006062 (+)
XLOC_021725 cacnb3b coding upstream 386620 26946429 ~ 26959206 (+)
XLOC_021724 CT573349.1 coding upstream 416968 26928743 ~ 26928858 (+)
XLOC_021730 si:dkey-9p24.5 coding downstream 1243 27352072 ~ 27356678 (+)
XLOC_021731 NA coding downstream 158038 27508867 ~ 27516273 (+)
XLOC_021732 wnt1 coding downstream 302077 27652906 ~ 27658054 (+)
XLOC_021733 rps26 coding downstream 324752 27675581 ~ 27677516 (+)
XLOC_021734 lmbr1l coding downstream 352920 27703749 ~ 27727512 (+)
XLOC_021722 NA non-coding upstream 720693 26591124 ~ 26625133 (+)
XLOC_021714 AL845287.1 non-coding upstream 1350685 25995027 ~ 25995141 (+)
XLOC_021691 BX957326.2 non-coding upstream 2784953 24556455 ~ 24560873 (+)
XLOC_021689 NA non-coding upstream 2853789 24483312 ~ 24492037 (+)
XLOC_021738 NA non-coding downstream 519910 27870739 ~ 27872705 (+)
XLOC_021742 NA non-coding downstream 788930 28139759 ~ 28277430 (+)
XLOC_021745 NA non-coding downstream 1039840 28390669 ~ 28420584 (+)
XLOC_021747 dre-let-7g-2 non-coding downstream 1185532 28536361 ~ 28536457 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_10321783_10325266 NA coding CI01000001 null 10321647 ~ 10325305 (+)