XLOC_021733 (rps26)


Basic Information

Item Value
gene id XLOC_021733
gene name rps26
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27675581 ~ 27677516 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043122
GGTCCTCTTTCATGCCTCTCTAAAATCAAGATGACTAAGAAGAGGAGGAATAACGGTCGTGCTAAGAAGGGACGAGGGCATGTCCAGCCCATCCGCTGCACAAACTGCGCCCGCTGTGTGCCCAAGGACAAGGCCATTAAGAAGTTTGTCATCAGGAATATTGTGGAGGCTGCTGCAGTCAGGGACATCTCTGAAGCCAGTGTGTTTGATTcCTATGTTTTGCCCAAACTCTATGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGTAAAGTGGTGAGGAACCGCTCTCGCGAGGCCAGGAAGGACCGTACACCACCTCCACGCTTCAGGCCTACTGGTGGTGCCCCAAGAGCTCCTCCAAAACCAATGTGATCTGGAGCcgtttacataatttttttatgtaaagaaataaaattgaCTTAAATGTTAA

Function

symbol description
rps26 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 10. Orthologous to human RPS26 (ribosomal protein S26).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003729 mRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-8606 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 10. Orthologous to human RPS26 (ribosomal protein S26).

Ensembl:

ensembl_id ENSDARG00000037071

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043122 True 436 mRNA 0.49 4 27675581 27677516

Neighbor

gene id symbol gene type direction distance location
XLOC_021732 wnt1 coding upstream 17527 27652906 ~ 27658054 (+)
XLOC_021731 NA coding upstream 159308 27508867 ~ 27516273 (+)
XLOC_021730 si:dkey-9p24.5 coding upstream 318903 27352072 ~ 27356678 (+)
XLOC_021729 tmprss12 coding upstream 324752 27345826 ~ 27350829 (+)
XLOC_021728 mipa coding upstream 602807 27068225 ~ 27072774 (+)
XLOC_021734 lmbr1l coding downstream 26233 27703749 ~ 27727512 (+)
XLOC_021735 dhh coding downstream 63076 27740592 ~ 27749062 (+)
XLOC_021736 kmt2d coding downstream 79468 27756984 ~ 27768993 (+)
XLOC_021737 kmt2d coding downstream 101154 27778670 ~ 27793877 (+)
XLOC_021738 NA coding downstream 193223 27870739 ~ 27872705 (+)
XLOC_021724 CT573349.1 non-coding upstream 746723 26928743 ~ 26928858 (+)
XLOC_021722 NA non-coding upstream 1050448 26591124 ~ 26625133 (+)
XLOC_021714 AL845287.1 non-coding upstream 1680440 25995027 ~ 25995141 (+)
XLOC_021691 BX957326.2 non-coding upstream 3114708 24556455 ~ 24560873 (+)
XLOC_021742 NA non-coding downstream 462243 28139759 ~ 28277430 (+)
XLOC_021745 NA non-coding downstream 713153 28390669 ~ 28420584 (+)
XLOC_021747 dre-let-7g-2 non-coding downstream 858845 28536361 ~ 28536457 (+)
XLOC_021748 dre-let-7h non-coding downstream 859149 28536665 ~ 28536778 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_10538498_10539667 RPS26 misc CI01000001 null 10538388 ~ 10539846 (+)