XLOC_021728 (mipa)


Basic Information

Item Value
gene id XLOC_021728
gene name mipa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27068225 ~ 27072774 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043118
ATCAGAGAGGCTGAATGTCTGCAGGACATGCTCATCACTTGTCAATCCGTGTTCCTTTATTAAACCTCAGCTAGAACTTCCTCATAGATGCAGAGACCACCAGCCAGTTTCAAACTCAAGGTTTTATGACAAAAGCCAACAGGATCGATGATTTCAGTCTTGTGAAGCAGGACTGCCTTTCATGCCAACTTCTTTGTAGCTTGTAGAAGCATTTATGCTTATTTTTCCATAGTTCACacacctttgttttttttttgtgtgtgtgtgtgtgtctccatccGCAAAAAAACCAAAGGGATCACATCCAGATCTGCTCATCTTTTTTTGGTGGCTTTCATCCCTCCATTTTCTTCCCTCTGCATTGCTTCTGTTGACTTTTTGCAGCCATGTGGGAGTTCCGGTCCATGTCTTTTTGGCGGGCTGTGTTTGCCGAGTTTTACGGCACCATGTTCTTTGTGTTCTTTGGTCTGGGAGCTGCTCTCCGCTGGACCACCGGGCCACACAATGTGCTTCAAGTGGCCTTCTGCTTTGGGCTGGCAGCTGCCACGTTCATCCAATCCATCGGCCACATCAGTGGTGGCCACATCAACCCGGCGGTTACTTTCGCATACCTGATTGGCTCCCAGATGTCCCTGTTTCGTGCCTTCTTCTACATCTGTGCTCAGTGCTTGGGTGCATTGGCTGGCGCCGCTGTGCTTTATGGGGTCACGCCAACCAACATGAGAGGAAATCTTGCCTTGAATACGCTTCAGCCTGGCATCAGTATGGGAATGGCCACTACCATAGAAATATTCCTGACCCTGCAGCTTGTGGTTTGTGTGTTCGCTGTGACCGATGAGAGGAGAAACGGGCGACTGGGGTCTGCTGCCCTGTCCATTGGCTTTTCTGTGCTAGTGGGACACCTGCTGGGGATGTATTACACTGGAGCCGGAATGAACCCCGCCAGGTCTTTTGCCCCTGCTGTGCTCTATAGGAACTTCATTAACCACTGGGTGTATTGGGTGGGCCCTATGATCGGCGCTGCCATGGGAGCTCTGCTCTACGACTTCATGCTGTTCCCACGCGTGCGGGGTCTGTCCGAGAGACTGGCTGTGCTCAAGGGAAACAAACCAACAGAGCCTGAAGCCCAGCAGGAGACGCGAGGAGAGCCAATCGAGCTCAAAACACAAGCCTTATAAACACTGCCAGGAAACTGTGGATCCCTAAAGCGACGCATACGTATGatcattttacacacacacacacttccagagGCAAATCAAGACACCGTAACCCCTTCACAAGGACTATGAATGAGGGTAAGAAGTACCCGCTCAGGGGCACCTCTGTCATTTCTAGTCTACTATGAGTGAACTACACTAGAAGTGGACTTCTGCATGCTTTCCGGTTTCACAGGCTTTCAATGATCTCACATTCATttcactttcttttttcttttctttgatttATCCAGAGACGTGACACGTGTACTACATTATTAGCATTTTGCAACAGATTTCTACTTACTGTCGACATTATTCAGTTGTGCATGGTGTGTGTGCGTGGGTGTTTTCCGACAGTTTCCAAGTTTGGCTCTTCCATTTTCCACAATTCGCTATTTGTTTGTATCAAtgcaatgttctttttttttctatctccCAAAATGAAGGAAACATTCCTTTGATCTTTGGTTTAGGTGGATGTTCATTCACAACTGAAAGCTCTATAAATCCTTTGGGAACTTTGATCCCTCTTCCGAGTCCGTTTCAAACTGTTGTATCGTTTAACGGCAGCCCACAGTGGCCCAAGTATGAAATTCTTTATAAGAAACGCAGTCACACCATCATTcatttatctaaaaaataaacaaataaacacacaaaacacaactaGTCTATTGTTATAGCCCAAATTTCACCTTTATACAGACAGAGCGGGAGGTATTTGTTTACAATAATACCGTAAGTGTTGTTTTAACTATGCGTGAGCTGTCACTGACACACTCAGCTCACTTTACGGAAAATACAAACACACGTCTTGTGAGTCCAAAAGCTTTGAGCGCATGTTGAAACCTGTTAGTTACAGACACAACTTAAGAAAGCAGAAGATATCTCTGAATGGGTTGTTGTTTTCTTACATGTATAATATATGATACTGTAAAGCACACAATATCACATAAGCAAGAGTGCCATTTTCCAtacaaaatagatttttatattgGGTTAGCTACTGTACATTTTAGAGACCATATAGTGTTTTTTTCCGTTTCACGCAAGAAGCCAGAGATTTGTGCATCTCAGAGTAAAACCGCTGTGTTTTGTTCCTGAATGAATCTTATTTTTGAACAAATGGAATGAGGAAATGATTCAATAATCCATTTGCATGACTTGTTTCCTTTCTAAATGAATCTGcagttttgaatgaatcaattaaataAACGATTCAGTGAACTTTTTGTCAACTTCACACTCCCCAAACAAGAAGTTTTTACCCTCAGTAGAGTTtagtacttttaaaaatattccaAAGTACATTGTTGTTTTCTCAGACTTATTTTTTTCGTCTGCATTTTCTGTGTagattagcaggtttggcatcaTTTTGTGTGTAAATAGCTTAAGTTGTGTTCTGACATTTAGTCTCAGGCAAATGAACATTTCTGTAAATCACTGTAAAAGAAATATGAAGCCTTACTGATGTGAGCAGAACAGGTTTAAAACATCATGGACTTATTAGTGACTGTTTCTGTTTTTTACAGTAGACTGGTACAGGGATTATGTCAAGACCTGAAAGAATTCTTCACTGTGGATTTTCCCATGGAATATTTCAATTTACGAGTAAAATAAAGACTGTGCTAATGTAAAA

Function

symbol description
mipa Enables water channel activity. Acts upstream of or within lens fiber cell morphogenesis and water transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in eye; lens; lens fiber cell; and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 15 multiple types. Orthologous to human MIP (major intrinsic protein of lens fiber).

GO:

id name namespace
GO:0070309 lens fiber cell morphogenesis biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0055085 transmembrane transport biological_process
GO:0006833 water transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015250 water channel activity molecular_function
GO:0015267 channel activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040801-41 Enables water channel activity. Acts upstream of or within lens fiber cell morphogenesis and water transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in eye; lens; lens fiber cell; and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 15 multiple types. Orthologous to human MIP (major intrinsic protein of lens fiber).

Ensembl:

ensembl_id ENSDARG00000037285

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043118 True 2844 mRNA 0.42 4 27068225 27072774

Neighbor

gene id symbol gene type direction distance location
XLOC_021727 ptges3a coding upstream 8227 27051919 ~ 27059998 (+)
XLOC_021726 rnd1b coding upstream 62163 26979174 ~ 27006062 (+)
XLOC_021725 cacnb3b coding upstream 109019 26946429 ~ 26959206 (+)
XLOC_021724 CT573349.1 coding upstream 139367 26928743 ~ 26928858 (+)
XLOC_021723 zgc:158263 coding upstream 316947 26733232 ~ 26751278 (+)
XLOC_021729 tmprss12 coding downstream 273052 27345826 ~ 27350829 (+)
XLOC_021730 si:dkey-9p24.5 coding downstream 279298 27352072 ~ 27356678 (+)
XLOC_021731 NA coding downstream 436093 27508867 ~ 27516273 (+)
XLOC_021732 wnt1 coding downstream 580132 27652906 ~ 27658054 (+)
XLOC_021733 rps26 coding downstream 602807 27675581 ~ 27677516 (+)
XLOC_021722 NA non-coding upstream 443092 26591124 ~ 26625133 (+)
XLOC_021714 AL845287.1 non-coding upstream 1073084 25995027 ~ 25995141 (+)
XLOC_021691 BX957326.2 non-coding upstream 2507352 24556455 ~ 24560873 (+)
XLOC_021689 NA non-coding upstream 2576188 24483312 ~ 24492037 (+)
XLOC_021738 NA non-coding downstream 797965 27870739 ~ 27872705 (+)
XLOC_021742 NA non-coding downstream 1066985 28139759 ~ 28277430 (+)
XLOC_021745 NA non-coding downstream 1317895 28390669 ~ 28420584 (+)
XLOC_021747 dre-let-7g-2 non-coding downstream 1463587 28536361 ~ 28536457 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_10150798_10152858 MIPA coding CI01000001 null 10150373 ~ 10152938 (+)