XLOC_021754 (masp2)


Basic Information

Item Value
gene id XLOC_021754
gene name masp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28770225 ~ 28796157 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043166
GTTTAGTTGAGTGTTTACATAGAGCCGTTTATTCAGCTGGTTCATTAACCTGGAGGACATTTGAGTTTTATGAGACAATTTTGTGACATGAGTTGATGTTTGTGATCTTCTAGAATGATGAACAGTGTATTGGCTTTCATCGCCCTGCTTCCATTAGCGTTTGGGCTAGAGCTGACAGGACTATTTGGGAGCTTCACATCCCCAAACTTCCCAAATGTCTATCCTAATAACCAGCGCGTGGTGTGGAATATCACAGCACCAGAAGGACACAGAGTACGCCTCTACTTTACTTATTTCAGCCTGGAGCCTTCTCATCGCTGCGAATATGACTACGTTCAGGTGTTCTCAGAAGGAAATGAGACCGTTCGCTTCTGTGGTGATACAGAGAAAAATTACGGCGATGCGCCCAAAAACACTGTCATCTATTCTGCCACCAGCAGCATGTCGGTAGTCTTCAGATCAGATTACTCCAATGAGGACCGATTCACAGGCTTCCAGGCGTTTTTCTCCGCTGAAGACATTGATGAGTGCCTAAGCAGTGTTGATGGGGAGCCTGTGTGTGACCATAATTGCCACAATTATGTGGGGGGTTTTTACTGCACGTGCAGATTGGGATACCAACTCCATGCTGATAAAAGACATTGCCCTGTTGAGTGTAGTGGGCAGGTGTTTCAGCAGAGGTCAGGAGAACTGAGCAGTCCAGAGTACCCTGGTGTTTACCCCAAGATGAGTCGCTGTGATTACACTATCAGTCTAATGGAAGGCTTCCAAGTGACCCTGGACTTCCAGGACCTGTTTGATGTGGAGACTCATCCTGAAATCCAGTGCCCTTATGACATCCTCAAGATCACTGCAGGTGGGAGGGAGTATGGCCCGTTTTGTGGCAAGACCCCACCAAGAAAAATAGAGACTGGAACTCACAAAGTGCACGTGACCTTTCGTTCTGACCGCTCTGGGAAAAACAAAGGCTGGAAGATCAAGTACACCAGCACAGCCCAGCCATGTCCGAATCCCGTGGCTCCTCAACAGGGTCATATCGAGCCTCAGCAGCCTCAGTACATCATGACGGACACCTTCAATGTCACATGTGATCTGGGCTATGAAATAATTCTGGGGGAAGAAGCTTTGCCCTTTTATCAAGCTACATGCCTGAGGGGGGGATTTTGGAATGGACCAATGCCCAACTGCGTCATTGTTGATTGTGGAGAGCCTCCAGAAGTGTGTAATGCAACTGTGAAATACACCACAACCATATATAAATCTGTGATCAAGTATACCTGCAATGAGTTCTACTCAATGGATGTTGGAGCAAGTGGAGTCTATACCTGCGCACATGACGGCTACTGGAGAGATGCCCTCGGTGGAAAAATACAACAGATATGTTTACCCATTTGTGGGCAGCCTGAGCTAAAGCTGTCCAAGGTGATAGGTGGGGAGAACGCAGAGAAGAACGAGATTCCCTGGCAGGTCATGATACGAATGGGAACCAAGTTCATAGGTGGTGCCTCTCTGCTGTCGGACGGCTGGGTTCTCACCGCTGCTCATGTCGTGAAATCCTTCGAGGACTCTGCCAATCTGCAGCTGAGGATGGGCACAGTCAAACATCACGACAACGAGGCAGTAGTTGGCATTCCACAGAAAATCTTCATTCACCCTCAGTACCATCACGATAATGTCAACTTCAACCATGACATAGCACTGATTAAACTGGAGTACAAGGTACCTGTCAGTAAAGCCGTCATGCCTGTGTGTTTGCCCGGGAGGGAAGAGCGGTTTGTTTTGAAGGCTAATGATGTGGGGAAGGTGTCTGGATGGGGAGTGTCAAATATAAACACACCTGCATTATTTTCTGGGAATCTGAAGTATGTACATTTACCTGTCTCCAACTTTAACGACTGTAAAACCAAATATGACTCTACAGTAACTAGTAAAGGGAAACTAGTGGTGACGGAGAATATGATTTGTGCTGGGTTTTCCCAGGGGGGGAAAGATTCCTGCCAGGGGGACAGTGGAGGGCCCTTTGCGTTTTTTGACAAACAGAGTAAAAGCTGGTTTATAGGCGGTATCGTGTCATGGGGGCATGGCTGCGCTCAGGCTGGGTATTATGGGGTTTATACCAAGGTGAGCAACTACCTTTCATGGATTGAAGAAGTCATGTCAAAAAACAGTTGAAATAGTTCAGAAAATTTGGATGATTGTTCGGTATTAAAGTTAATGTCTATGACAAGCATATAATATCCCAAGTTTGTACAGCACTTTTGTTGGCACTTGCTGTTTTAAATGTGCTCAATAAATTAAGCTGAATCAGAGGTATATGGGTCAAAAGCAAAAAGCGATTTTCAGCaatgaaacaatgaaaaaaatgttta
>TCONS_00043167
AATTTTGTGACATGAGTTGATGTTTGTGATCTTCTAGAATGATGAACAGCTTTTTGTTTTGCTGCTGTTTTAGTGTATTGGCTTTCATCGCCCTGCTTCCATTAGCGTTTGGGCTAGAGCTGACAGGACTATTTGGGAGCTTCACATCCCCAAACTTCCCAAATGTCTATCCTAATAACCAGCGCGTGGTGTGGAATATCACAGCACCAGAAGGACACAGAGTACGCCTCTACTTTACTTATTTCAGCCTGGAGCCTTCTCATCGCTGCGAATATGACTACGTTCAGGTGTTCTCAGAAGGAAATGAGACCGTTCGCTTCTGTGGTGATACAGAGAAAAATTACGGCGATGCGCCCAAAAACACTGTCATCTATTCTGCCACCAGCAGCATGTCGGTAGTCTTCAGATCAGATTACTCCAATGAGGACCGATTCACAGGCTTCCAGGCGTTTTTCTCCGCTGAAGACATTGATGAGTGCCTAAGCAGTGTTGATGGGGAGCCTGTGTGTGACCATAATTGCCACAATTATGTGGGGGGTTTTTACTGCACGTGCAGATTGGGATACCAACTCCATGCTGATAAAAGACATTGCCCTGTTGAGTGTAGTGGGCAGGTGTTTCAGCAGAGGTCAGGAGAACTGAGCAGTCCAGAGTACCCTGGTGTTTACCCCAAGATGAGTCGCTGTGATTACACTATCAGTCTAATGGAAGGCTTCCAAGTGACCCTGGACTTCCAGGACCTGTTTGATGTGGAGACTCATCCTGAAATCCAGTGCCCTTATGACATCCTCAAGATCACTGCAGGTGGGAGGGAGTATGGCCCGTTTTGTGGCAAGACCCCACCAAGAAAAATAGAGACTGGAACTCACAAAGTGCACGTGACCTTTCGTTCTGACCGCTCTGGGAAAAACAAAGGCTGGAAGATCAAGTACACCAGCACAGCCCAGCCATGTCCGAATCCCGTGGCTCCTCAACAGGGTCATATCGAGCCTCAGCAGCCTCAGTACATCATGACGGACACCTTCAATGTCACATGTGATCTGGGCTATGAAATAATTCTGGGGGAAGAAGCTTTGCCCTTTTATCAAGCTACATGCCTGAGGGGGGGATTTTGGAATGGACCAATGCCCAACTGCGTCATTGTTGATTGTGGAGAGCCTCCAGAA
>TCONS_00043168
GTTTGTGATCTTCTAGAATGATGAACAGGTATGGAAGGTGTTGTGACAGGATTGTGAAGGCATCAGTGTGTTATCAGTGATACAGCTTTTTGTTTTGCTGCTGTTTTAGTGTATTGGCTTTCATCGCCCTGCTTCCATTAGCGTTTGGGCTAGAGCTGACAGGACTATTTGGGAGCTTCACATCCCCAAACTTCCCAAATGTCTATCCTAATAACCAGCGCGTGGTGTGGAATATCACAGCACCAGAAGGACACAGAGTACGCCTCTACTTTACTTATTTCAGCCTGGAGCCTTCTCATCGCTGCGAATATGACTACGTTCAGGTGTTCTCAGAAGGAAATGAGACCGTTCGCTTCTGTGGTGATACAGAGAAAAATTACGGCGATGCGCCCAAAAACACTGTCATCTATTCTGCCACCAGCAGCATGTCGGTAGTCTTCAGATCAGATTACTCCAATGAGGACCGATTCACAGGCTTCCAGGCGTTTTTCTCCGCTGAAGGTGATGGAAACAATGGATTCATAGCATGACTGACCCTGTCTTTCTGTCTCACTAAATGATCCTCTCTCTTGTGGTGATCCCTTTTGCTGTAAAACGGTTAAATTGGTAGTTAGCAGAAAAAAATGTGCATTCTATAGATGGGGAAAAAAGTTAAACTGCTTGGAAATTCCATGTTTTTCATGATTTACAATttttatatacagctgaagtcagaattattagcccctgtttattttccccccaatttctgtttaacggagagaatttttataaaacacatttcttaaacataatagttttaattactcatttcta

Function

symbol description
masp2 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within complement activation, lectin pathway and proteolysis. Predicted to be active in extracellular space. Is expressed in liver. Orthologous to human MASP2 (MBL associated serine protease 2).

GO:

id name namespace
GO:0001867 complement activation, lectin pathway biological_process
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05171 Coronavirus disease - COVID-19
ko05150 Staphylococcus aureus infection
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-060130-154 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within complement activation, lectin pathway and proteolysis. Predicted to be active in extracellular space. Is expressed in liver. Orthologous to human MASP2 (MBL associated serine protease 2).

Ensembl:

ensembl_id ENSDARG00000007988

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043166 False 2369 mRNA 0.46 11 28770225 28796157
TCONS_00043167 False 1166 mRNA 0.48 9 28770301 28792889
TCONS_00043168 True 816 lncRNA 0.41 2 28770322 28773116

Neighbor

gene id symbol gene type direction distance location
XLOC_021753 cort coding upstream 37912 28731379 ~ 28732313 (+)
XLOC_021752 srm coding upstream 43119 28718863 ~ 28727106 (+)
XLOC_021751 smc1a coding upstream 56243 28693278 ~ 28713982 (+)
XLOC_021749 l1cama coding upstream 88450 28582865 ~ 28681775 (+)
XLOC_021750 BX664745.1 coding upstream 155283 28614827 ~ 28614942 (+)
XLOC_021755 CR381533.1 coding downstream 1269 28797426 ~ 28797548 (+)
XLOC_021756 CR381533.2 coding downstream 3946 28800103 ~ 28800219 (+)
XLOC_021757 pex14 coding downstream 12845 28809002 ~ 28925757 (+)
XLOC_021758 NA coding downstream 99618 28895775 ~ 28896080 (+)
XLOC_021759 CR677513.1 coding downstream 107173 28903330 ~ 28903456 (+)
XLOC_021748 dre-let-7h non-coding upstream 233447 28536665 ~ 28536778 (+)
XLOC_021747 dre-let-7g-2 non-coding upstream 233768 28536361 ~ 28536457 (+)
XLOC_021745 NA non-coding upstream 349641 28390669 ~ 28420584 (+)
XLOC_021742 NA non-coding upstream 492795 28139759 ~ 28277430 (+)
XLOC_021760 CR677513.2 non-coding downstream 129766 28925923 ~ 28926040 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G207283 NA non-coding NC_048566.1 CM023220.2 95013936 ~ 95015257 (-)
tiger barb (Puntius tetrazona) G158417 masp2,LOC107571531,LOC107708846 non-coding NC_056721.1 CM032090.1 16530052 ~ 16531096 (-)