XLOC_021818 (si:ch211-226m16.3)


Basic Information

Item Value
gene id XLOC_021818
gene name si:ch211-226m16.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33294633 ~ 33309622 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043266
GCTTCTTCCTCCTCCTTTTTCTCAGCCCAAGTCTTGCTGATGATACAGTGGCTGAAGACATCGGCCCTCACCAGCTGGAGCGTCTGGTGGAGCTGCTGACGGTTCGAGAGTGTGAAGACCTCATCTTCGCTTTATCTCAACCCGAAGAGAGCATCTTCAAACACCTGGACCGACTGTCTGCAGAAAGAAACCAGCTATTTCCATCAAGACGACGCAGAAGCACGAACCATCAGCCCCCCTGTCATTCAGCACTAAAGGACTGGCTTCAGATTCACGGTGAGCAGATATACTATGACAGGCTGTCTCGAGCACTTCAACAGATCGGCAGGACTGACATCGCCATAGAAGTGGGTAAGAATATCAACCAGGACAAAACTCTTGCTATTCAGAGATATGTGGAAGGATACCACGAACTTGTAAACCAAATGGCCAGCAATATAGAAACGCATCAACCTGAAGATCTGCAATTCACTGAGAAAAAGGacacttgcaccagtttgcACCAGAGACATTTTTACAACCCATCACTCCATATCTCTATATAAAAAGACTGTGCacttctgagtgtgcctcacacagCCAAAGCTTTTACCTGGAAGGATGTGGACCTGGTGGTGATAAGGCAACCTGCGCCACCTTACCAGCACCATCTGCTAGACAGAGCATGGCCTCTAATTTTCGGCCTCCTGCTTGGATTTGTCGGTGCGCTGCTCATGAGTGTGCCCATCTTGCTTATTAGCATATATGTATCCCATGGCAACAGTACCAAATCCAAGGCAAAGCATCAACCCCGTCTCTGTCCCCTCCTCAGCGTTGTGACATCATCACAGATACGCTGCCAAGAGGACACAGAGTAATGGATGTTCAGAACAATAATGAAGCCATGATTATTGGTATGAATTGC
>TCONS_00043267
GACATCGGCCCTCACCAGCTGGAGCGTCTGGTGGAGCTGCTGACGGTTCGAGAGTGTGAAGACCTCATCTTCGCTTTATCTCAACCCGAAGAGAGCATCTTCAAACACCTGGACCGACTGTCTGCAGAAAGAAACCAGCTATTTCCATCAAGACGACGCAGAAGCACGAACCATCAGCCCCCCTGTCATTCAGCACTAAAGGACTGGCTTCAGATTCACGGTGAGCAGATATACTATGACAGGCTGTCTCGAGCACTTCAACAGATCGGCAGGACTGACATCGCCATAGAAGTGGGTAAGAATATCAACCAGGACAAAACTCTTGCTATTCAGAGATATGTGGAAGGATACCACGAACTTGTAAACCAAATGGCCAGCAATATAGAAACGCATCAACCTGAAGATCTGCAATTCACTGAGAAAAAGGCCAAAGCTTTTACCTGGAAGGATGTGGACCTGGTGGTGATAAGGCAACCTGCGCCACCTTACCAGCACCATCTGCTAGACAGAGCATGGCCTCTAATTTTCGGCCTCCTGCTTGGATTTGTCGGTGCGCTGCTCATGAGTGTGCCCATCTTGCTTATTAGCATATATGTATCCCATGGCAACAGTACCAAATCCAAGGCAAAGCATCAACCCCGTCTCTGTCCCCTCCTCAGCGTTGTGACATCATCACAGATACGCTGCCAAGAGGACACAGAGTAATGGATGTTCAGAACAATAATGAAGCCATGATTATTGGTATGAATTGCAATATTAAATTTGCCTTTGATGGCTGATTACGACCCA

Function

symbol description
si:ch211-226m16.3 Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-8 Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000026864

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043266 False 904 processed_transcript 0.48 6 33294633 33309585
TCONS_00043267 True 789 mRNA 0.48 4 33296588 33309622

Neighbor

gene id symbol gene type direction distance location
XLOC_021817 dre-mir-205 coding upstream 4272 33290273 ~ 33290361 (+)
XLOC_021816 AL928610.1 coding upstream 175509 33119010 ~ 33119124 (+)
XLOC_021815 NA coding upstream 715199 32577050 ~ 32579434 (+)
XLOC_021814 NA coding upstream 731819 32562610 ~ 32562814 (+)
XLOC_021813 si:dkey-261h17.1 coding upstream 762021 32499916 ~ 32532612 (+)
XLOC_021819 rapgef3 coding downstream 71532 33381154 ~ 33444055 (+)
XLOC_021820 NA coding downstream 145941 33455563 ~ 33459265 (+)
XLOC_021821 CT027694.1 coding downstream 228429 33538051 ~ 33538169 (+)
XLOC_021822 dazap2 coding downstream 408980 33718602 ~ 33729552 (+)
XLOC_021823 si:ch211-210c8.6 coding downstream 442653 33752275 ~ 33757742 (+)
XLOC_021812 NA non-coding upstream 806907 32480330 ~ 32487726 (+)
XLOC_021824 CR354542.1 non-coding downstream 450125 33759747 ~ 33760665 (+)
XLOC_021826 CR381531.1 non-coding downstream 519043 33828665 ~ 33830190 (+)
XLOC_021831 NA non-coding downstream 669089 33978711 ~ 33983432 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_03848621_03850592 NA coding CI01000001 null 3848413 ~ 3850798 (-)