G226200


Basic Information

Item Value
gene id G226200
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13218202 ~ 13221973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU258745
tactgtagttggggttacagtggcagtacattggtcatgtgttTGTATTGTAGAGGGGGTTACGGTcgtactgtagttggggttacagtggcagtacattggtcatgtggttgtactgtagagggggttacagtggcagtacattggtcatgtggttgtactgtagaggGGGTTACGGTcgtactgtagttggggttacagtggcagtacattggtcatgtggttgtactgtagaggGGGTTACGGTcgtactgtagttggggttacagtggcagtacattggtcatgtggttgtactgtagaggGGGTTATGGTGATACTACGGTCAAGCAGCGTTGGAACCTTACTCACAGTGCATGTCTATGATCTCGTCCAGGCTGGGGAAGATGGTGGCCAGCTCTGTGGCGGTCATGAGTTCCTCTCTCTCCAAAGGCTTCCAGAACACTGTCTGCAGAACACTCAGCATACGCACGTGGGCGTGCTCCGTCGCAAAcaactctgagagagagagagagagagagagagagacagagacagagaaagacagagacagagagagagattcctcTAGTGCCAATTCATTCTCAATATTTTGCATCAGATGAGTAGCAGCTCAATGTTACACCGCAATTACTTCTAATTGGATCCCTCCATCCCCCGTCCCTCCTCACCGTTGATGACCTCCTGCCGCTTGGTCTCCTTCTTGCTGAGGTCTTTGAGGGTGTCTGGGGGGGTGTGTTCTCTCCAGTTGGGCGGGTCCTGCTCCAGCTCCAGGAGGCGAGGGTCCTGTTCCTCCTGCTGGGGGGTGGTGCCAGAGAGGGAAAGACCTGGGAGCACACCCTCGGGCAGTAACACCCCTTCATCAACACtgatagaagagaggaggacagaggaggaggagaggggcaggTATAAGGGTATGGGGATTAAGGGTATGGGCGATAATATGAAAAGAGTCTAACGCGAAGCTAGAAAAACCTGCTTGGGTTGAGAGGCATTTGGATTGGGACATTACGCTATTGGCTGGTTCAAAGTCTACATAATCCACACACAGCACTAACATTACACGTAGTTACAGTTGGTACTGTAGCCCTGACTAAGAAAATAACTCCAGCTCTGACCCTCCTCCTCCAGTCAAGCTGTGTCACTCAGCATGGATCTCTTCCTGACTTAATGAAGCTGCTGGGGACACAGTGGAAGAAGCTTCCATTCACTCTCACTCAGCCTTTCTGTCTTAGACATCAGACAGTCAGTAAAGCAAAGTTAGTTGGGCAGTAATATCAGCCTGTCCATCAGttactatagtcagtcagtctgcctgTCCATCAGttactatagtcagtcagtcagtcagcctgtcCATCAGttactatagtcagtcagtcagcctgtcCATCAGttactatagtcagtcagtctgcctgTCCATCAGTTACTGTGAGGAGCTgtgctcctctctcccccctttgagagaaggggggggggtagGGGTCTGCCTTACGAGGGGTGGGGAGAGGTCGGGGAGGAGTGTGCTGCCGTGGCGGCGGCTTGCAGGTCCACGTCGCTACGGGAACGCGACTGTTTGGCCCGGGAGGAGCCACGGCGACGGGAGGAATGTCTGTCCACACGAGCACTCTCACTGCGTCCCACACGcctggggagggggggaggggagggaggaggagagtacatcgagggaagggagagaggagagcgagaggagagccaGTGGGTGGGAAAAATACAAGGAGGATGGTAGTAGGGGAGGCACGGGaggaagtagagagacagacggagtgaGGAGTACAGGAACCACAAGAAAATGGTCCAAAAGACCAAACCAAAAAGTACAGAGTGGAACAACAAAGACAGGGGAGATATTAGGATAAAGTGGATCCAAGCAGGAGAACCATTACAGAGGAAGTCAATGTGATGTCAAAGGAATGTAGAGGATCAAAAGAAAAGCACACAAGAGATGTGACAGAGAATGGATGGTTAGACTCAGGAGCATAGAGACACTCCACACAGTCCTGGGTTACTGCTTAATGACTAGCCCTATTAGAAACACATTGGAAGCAGAGACACTCCACACAGTCCTGGGTTACTGCTTAATGACTAGCCCTATTAGAAACACATTGTTAGCATAGACACTCCACACAGTCCTGGGTTACTGCTTAATGACTAGCCCTATTAGAAACACATTGGAAGCAGAGACACTCCACACAGTCCTGGGTTACTGCTTAATGACTAGCCCTATTAGAAACACATTGGAAGCAGAGACACTCCACACAGTCCTGGGTTACTGCTTAATGACTAGCCCTATTAGAAACACATTGGAAGCCCATCTACCTCAAGACTATTAGTTAAGAAAGCGGTCCTTAGTAACAtctcagtgtgtctgtgtaccaAGGCCTTTCAATTATGCAGTGTTAAATGGTAATCAATTGGGCTTATCAGCTTtccaatctcacacacacacacacacgaagactATTACTCTCTAACATCACAGCCTACTCACGTCACTTCAAGCTACAGGATAAACAATACTTAGCCATGCagtgagagtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcagtaATGCAGGATGGACTGTGTGTTATCAATATGAGGCCCAGTGCGTGTCCGTATCCCTGTCGCAGAGAAGTAGAAACCCACCTTGTCTTGCGTCTGTAAAAACACGGGACAGGACAGTTACATAACCACCACAACCATtcaacagtaacacagtaacccCTTTCTACAAACCTCCAACTCTCCCCATCAACCGCTGCAGCACACGGACAGAGCCTAGCAGCACTGAACGCACTGTAAAACCACAGAAAGCAAAGCACGCCCACAAACACAAGACGTCTGCTGTCCTGAACATGGTACCACATGAAGCCCTGTGAAGACTGGACAACAGAACATAGCGGAACCCTATAGAACCACACATACTGATGCCTTCTGCAAGCAACAGACATGAAAGCGAACCAGACCTCACTGCTTGACCTACAGTAGGACTGGGATAAAGCCGACAACAGACAAATCTAAAgctggaccacacgactgaagCACAATAAAAGCCAACTTAATGAACTTAAGCCTGTAGAGATACAATGCTCTACAAACCAAATATAGCACAATGAATGCCCAAATCAGACAGACGCACAACCCCAGACAACATAACGTTATACCAGCTTTCCCCAGCTCTGGTACTTGAGTCTAgcctgcagacacacagacaagatGACACACTACAGTACAATGTTAACTATTATACACTTAACTTGCTCTGAACAACTGAGCAGAGTCAGCATCGCACAAACAAGGAGACAGCAGTGGTGCTTTGGAAGAGGAGCAAACAAACATGAAAaatggacacacagagagaaagaacgtGGAGAACAGGTAAACAAAACAAAAGATTTGTggtagaggagaagggaggaggaggggttggggGCTGGAGGGGAAGACCAGGTCCCTGTAGCCCCAGTAAGGGTCCATCTCCAAATGCTGGGTGGGTGTTCACTACATGGAGCTGCTCTGGCAGGGCAGGGTTAAGGTGTGGTAGGTAGGCTAGGCAGCACAGTACACAGCAGGGACGGACGGAGACACTGAGGGAGTTTTACCACGCTTCCTCAGCCTTAGCATAGCCACTGACCCCTAaccttttaaaaatgtttgaCTATGTTCAACTCTACCTAAAGGTGTTGGGTCTATGTTGGTCTTTGGTTTTAT

Function

NR:

description
rho guanine nucleotide exchange factor 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258745 True 3772 lncRNA 0.49 1 13218202 13221973

Neighbor

gene id symbol gene type direction distance location
cxcr3.1 cxcr3b coding downstream 289138 12925454 ~ 12929064 (-)
LOC110503616 LOC106605556 coding downstream 335186 12880885 ~ 12883016 (-)
tlr21 LOC106605556 coding downstream 342514 12864942 ~ 12875688 (-)
LOC110509927 LOC106578751 coding downstream 357613 12856694 ~ 12860589 (-)
LOC110509869 NA coding downstream 454221 12761519 ~ 12763981 (-)
LOC110510146 mrpl17 coding upstream 117220 13339193 ~ 13341845 (-)
LOC110510138 trp-ii coding upstream 124136 13346109 ~ 13347872 (-)
LOC110503661 trp-i coding upstream 137909 13359882 ~ 13360962 (-)
LOC110510120 LOC106577461 coding upstream 154882 13376855 ~ 13378759 (-)
LOC110510106 LOC106577440 coding upstream 166436 13388409 ~ 13410671 (-)
G226201 NA non-coding downstream 339 13217657 ~ 13217863 (-)
G226222 NA non-coding downstream 1052 13216875 ~ 13217150 (-)
G226221 NA non-coding downstream 1446 13215875 ~ 13216756 (-)
G226214 NA non-coding downstream 10388 13206072 ~ 13207814 (-)
G226215 arhgef1 non-coding downstream 13070 13203344 ~ 13205132 (-)
G226223 NA non-coding upstream 1301 13223274 ~ 13223678 (-)
G226225 NA non-coding upstream 3069 13225042 ~ 13225341 (-)
G226226 NA non-coding upstream 4388 13226361 ~ 13226571 (-)
G226231 NA non-coding upstream 24580 13246553 ~ 13246890 (-)
G226232 NA non-coding upstream 25111 13247084 ~ 13247459 (-)
G226187 NA other downstream 37930 13177178 ~ 13180272 (-)
G226124 NA other downstream 150845 13066873 ~ 13067357 (-)
G225171 LOC106605713 other downstream 745142 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 760411 12454388 ~ 12457791 (-)
G225099 NA other downstream 877236 12336241 ~ 12340966 (-)
G226224 NA other upstream 1911 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 122101 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 704701 13909746 ~ 13927861 (-)
LOC110538195 LOC106578103 other upstream 777763 13995196 ~ 14023153 (-)
G227060 NA other upstream 1206820 14428793 ~ 14475166 (-)

Expression


Co-expression Network