G227671


Basic Information

Item Value
gene id G227671
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15262273 ~ 15271270 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU260424
GTGTCCATAATTTtgtgtttattcatgtatatTAAATATACAATTAAACAGGCAAAATAATGAATGATTTAAGCTATCCGGTCTGCCGGTATTAAAAAAAGTAAGTCATTAGATGTAGTTTTTCAAAATGAATGTCATAAACATTGATGAATAAACAGCATTATGATATATCCCACAGGGCACAGGCGTCAATTCAACGTATATTCcacgttggttcaacgccatttcattgaaattacgtggaaacaacgttgattcaaccagcgtGTCCCCAGTGGGATGTATCTCTTTGGAAAGTGCCTGTCACCGGCACCTATTGTATGTGGTCAAGGTTATGATGATTTTGGGTGCTGGGGTTGAGAGAAGCGGTGGCTGTGGTGCTAGCCGGTGTTGAGGTGTCAGATCAGTCGATACGGTTGCCCAGGATGATGGCAGACACGATGTACAGGACGATGACGGTGATGCCGATACCCAGGGCGGTGTGGTTCAGTATCCGCGCTAGACGAGAATTCTTCTCAGCAATCTGCTGATGACCCTGGTTGTTGGCGTCTCTAgtctgagagcagagagagagggagggagggagggagcacagaaggatagaaggacagagggatggagggagagcgtgagagagagttGTAATTGTTGTAATCGTCATTCAGGAAAAAGAGGAAGAGTCTTCAACGGAGAGAGTTCAACGATGATTCAGTGCCATGCTCTTATTCGATTGGAGTTATTTCAGGAGATGCAGTATTAATTCACAAACACAATACTCAGCCAACATGCCAACTAAGtcagaaaataaaaaacaaataggGACATTTTTCTCTCTCACTGCAGAGCATTTATAATATATCATATTAATACCTACTAGTGATGAAAAACAACTAAAATGCTGATTTCCTGTGGCCACACCCCAAGCAGCACTAAGTTGAAACAGCTGTGGATGGAGCACAAACGTGGAGCTCTCTCCCCTAGCTACAGTCTTAAGAATGATGCTATATTGTAAGACATATTTTGACACCTGTTATTATTTCTCTTGGGGGAAGAACAAGAGTTGACAGGCGATGCTAAACATTGAGTCAACTAACTGAAATCTCAGTGTCCGTGACTCTCCTTGCCATTGACTTTACACTATAGACATCTCTGAGCAGCTGACTACAAGAGTCAGTATGAGTCACACACTAAGCAACAGTAAAGCTTTAAGAAAAAGTTTAACAGTATATGTGTGTCACATGTGGTCTTGGATTACTTTCTTTCTCCAAGTCAGGAAGAGTCTTGTGCCAAACATGAAGTGGCTGTAAAACACAAACAACAGGCACCAAAATTCCCACTCAAAGCATTATTGGGTAAGCAGCAGAAGCTAAAATTCTCATAGTGAAATAAATGTAGCGTTTCTGCCACCTTAGTCTATGTTTAAAGAataacaacatgacctcaacagTGACTGACTCAATTTAATTTTAGTCTCAATTGAATAAACCTCCCCCTAGTCACATGACGTTGTTAACATAGCCTCAATCTGTTTCTGTTCTCTGGTGAAATTATTGAGTTGGCTTCCACAGCAGGGCGAGGGTTGACAGAAGGCTTTAGGCAGAGAGGTTCTGTGTTAATTTAGGGTAGTGTGTCGTGAGAAGAGCTGCCTGCTATTGTAAACCCTCCTCCTGATTACTGACAGCTGGATCATAATTGTTTCCACACGGCTAGTTGGAGGAGAAGGGCCTGTTGGCTCTCTTAGCACTGGACAGTTGTTGTTTTTCTGAGGTTTGTGTATTTGCGTGTCTTCAATAATTATCTGGGCACTCCACCAAATGGTTTTCTTCCATTTCCTTGAGGTTCACAAGATttcctccatctgtctgtctgtatgctctGTTTGCCATGATATTGCAAAACTTGAAATACATATAGCCTATCCATTTACTAGGCTACTATGCACAATTAAATGAGAGATGTGCTTGGTAATTTGTTCTATGGAATATGAAACCATCACAGCCAGAAAAGGTGAGAATTATTGTATATTCTGGAATACTGTGTATTCTGGAACACTGTATATTCTGCAATGgttatgaaaataaaataaataggaaAAATATTCCTTTGTCTAATTATAAGATTATGTCTAACTATTTTAGATTctgaaaataaaacatatttttgctCTTCTCACTGATGGCAAATAGTTGCGTTCTTGTTAATATGTTTTCCTCTTAAATTTGTTTCATTTTCATAATATCCCCCATTCGCACAAAGTACTCACTTGCAAGCTTGCAATACAATATTTCAACCACTAGCAGATGTAAGTATGCATGGTCTGAAGTTTGCAGGGAGGTGAGTACATTCTCACGTCAAgtactttttttaaataaaacttgCATATGCACATTTTGgtgtatattttgtatatatgcacggtttataaatgaggccccagaaACCTACTGGAAGCTTGATTCCACTCACTTACCCACGTAATACTAATTTCCCCATGGGCCTATATCAGCACTGCAGCATATTGTCCATATGACTCATCATAATATAATCTGTCGGGTCAGGCTCCTTGAAAACCACATTACATTTAATACCAACTAAAACCTAAATAAAATATTCTGAACAATTAACTGGTTATTCTAGTGttttattaaatataaaatacTGTATCTGCAATATGTTCTAAGCAATGTGTTGAGTGCAATCGGACTACAAAGTGAATATTTCATGAATTGTTTTTTTGTGGAGGATCTATAACTGGTGTGTGACCtcatggagagggaggggcaggATGTGAGATGGGTGATATGTGAGAAAATTCCAAGATCAAACATAATCAGATGGTTGTGGGAGTCTGTCTTTCTAAACTCTGCGACATGAAGGGCCTTCTCAGTGACAGTACAGAAATACTGGTGAATGGGCCATCCATTGAGTGACCCAGGGAGCATTTGTATATTTTTTggggtcatttagcagacaatcttATCCAGAGTAACTTGGTACAGGTCCCCGGTGGGAATGAAACCCagaaccctggcattgcaagcgccatgctctaccaacttcGCCACACGGGACTACTATTGATTTACACTATCAACAGATTTCTACTCTTCTCTGTGACTGAAGAGAAGGTTGTCAACgtgtagtcaactttgttctaAGGGCAGAAAGAATCTGATTGGTTTAGGGAAGAACAAATCCGATTGGTTTCTAAAAGGTCAATGGGTGGAGTTTAACAGATGCACAACTTGAAACAACTAAACAGAGCTAGTTGGCTAGCAGATATCTATCCCTTACTAAGAGCTAGATTAAATCCGTaccaaaatgaaaaaaataaatgttcctgTGTTCgaggagactgcattcacggtaaatgtTGCATATGTTGagtcaatcggaaattacctttacatttaaaTCGTACTATACAACGGACCTTCCATGCTACAGATTGAATGGAGCCTTAGTCTCCACAGTTGTCAGAAATAAGTTGAATTAGATATTGCTTGTGTCATTGCCGACAGCAAAGAACACTGAATTGAGGAAATTGATACACGTGTAACAAGAAGTAAATATTTGACATTGAGTTGTAAAATGTTTACTCTTGTGAGTGGCAACCTCACTGGCACTCTGTGTAATGACAACCAGTAATACATGTCATTTCAGACTTTAAGAATAGTCTCTTTCTGCTGCATTCTCATAACATTGTCAAATCTGTCTTTAAACTCTGATATGACTTATCCATACACACTGAATGTACATACACTATCCTTCAGAAATGTATTAGAAATATTCCAAAATACAATTTGtgtccataatttggtgtttatATCCCACAGGGCACAggcgtcaattcaatgtctattccacgttggttcaacgccatttcattgaaatgacgtggaaacaacgttgattcaaccagtgtgtccCCAGTGGGATGTATCTCTTTGGAAAGTGCCTGTCACCTGCACCTATTGTATGTGGTCAAGGTTATGATGATTTTGAGTGCTGGGGTTGAGAGAAGCGGTGGCTGTGGTGCTAGCCGgtgtt

Function

NR:

description
annexin A11-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260424 True 4050 lncRNA 0.40 2 15262273 15271270

Neighbor

gene id symbol gene type direction distance location
LOC110519925 LOC106578249 coding downstream 31786 15216991 ~ 15230487 (-)
LOC110519917 LOC106577761 coding downstream 58127 15184818 ~ 15204146 (-)
plm plm coding downstream 90356 15158002 ~ 15171917 (-)
LOC110511165 NA coding downstream 146432 15112835 ~ 15115841 (-)
LOC118936618 LOC106605662 coding downstream 152342 15102353 ~ 15109931 (-)
si:dkey-65b12.6 LOC106577653 coding upstream 126403 15397673 ~ 15406356 (-)
LOC110519926 LOC106577653 coding upstream 169464 15440734 ~ 15470012 (-)
LOC110512370 NA coding upstream 244929 15516199 ~ 15525808 (-)
LOC110512327 LOC106578554 coding upstream 265093 15536363 ~ 15539677 (-)
upk1a LOC106605667 coding upstream 357167 15628437 ~ 15631725 (-)
G227745 NA non-coding downstream 14299 15247511 ~ 15247974 (-)
G227744 NA non-coding downstream 15756 15246312 ~ 15246517 (-)
G227742 NA non-coding downstream 17987 15244021 ~ 15244286 (-)
G227741 NA non-coding downstream 19082 15242952 ~ 15243191 (-)
G227732 NA non-coding downstream 36180 15225826 ~ 15226093 (-)
G227748 NA non-coding upstream 3303 15274573 ~ 15275233 (-)
G227750 NA non-coding upstream 6882 15278152 ~ 15278365 (-)
G227770 NA non-coding upstream 55214 15326484 ~ 15327297 (-)
G227771 NA non-coding upstream 55467 15326737 ~ 15327088 (-)
G227782 nca11 non-coding upstream 108685 15379955 ~ 15390413 (-)
LOC110503689 tm149 other downstream 625563 14598789 ~ 14638314 (-)
psenen LOC106577931 other downstream 737419 14519197 ~ 14524902 (-)
G227060 NA other downstream 787107 14428793 ~ 14475166 (-)
LOC110538195 LOC106578103 other downstream 1260465 13995196 ~ 14023153 (-)
wu:fe05a04 LOC106578221 other downstream 1334440 13909746 ~ 13927861 (-)
G228094 NA other upstream 329745 15601015 ~ 15601488 (-)
G228098 fbrl other upstream 434964 15706234 ~ 15708265 (-)
G228191 LOC106578455 other upstream 516352 15762029 ~ 15791401 (-)
G229373 LOC100194703 other upstream 1568119 16839389 ~ 16839839 (-)

Expression


Co-expression Network